Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05925

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS05920 and HGI48_RS05925 are separated by 535 nucleotidesHGI48_RS05925 and HGI48_RS05930 are separated by 401 nucleotides HGI48_RS05920: HGI48_RS05920 - ribonucleoside-diphosphate reductase subunit alpha, at 1,252,395 to 1,254,683 _RS05920 HGI48_RS05925: HGI48_RS05925 - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 1,255,219 to 1,255,938 _RS05925 HGI48_RS05930: HGI48_RS05930 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 1,256,340 to 1,258,973 _RS05930 Position (kb) 1255 1256Strain fitness (log2 ratio) -1 0 1at 1254.771 kb on - strandat 1254.797 kb on - strandat 1254.801 kb on - strandat 1254.890 kb on - strandat 1254.890 kb on - strandat 1254.897 kb on - strandat 1255.069 kb on + strandat 1255.088 kb on + strandat 1255.101 kb on - strandat 1255.145 kb on + strandat 1256.037 kb on - strandat 1256.053 kb on - strandat 1256.053 kb on - strandat 1256.078 kb on - strandat 1256.103 kb on + strandat 1256.103 kb on + strandat 1256.159 kb on + strandat 1256.209 kb on + strandat 1256.209 kb on + strandat 1256.231 kb on + strandat 1256.231 kb on + strandat 1256.280 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,254,771 - -0.4
1,254,797 - +0.6
1,254,801 - -0.6
1,254,890 - +0.2
1,254,890 - -0.0
1,254,897 - +1.5
1,255,069 + +0.8
1,255,088 + -0.6
1,255,101 - +0.4
1,255,145 + +0.3
1,256,037 - -0.3
1,256,053 - +0.4
1,256,053 - +0.4
1,256,078 - -0.2
1,256,103 + -0.5
1,256,103 + -0.3
1,256,159 + +0.2
1,256,209 + -0.7
1,256,209 + -0.4
1,256,231 + -0.0
1,256,231 + -0.6
1,256,280 + +0.1

Or see this region's nucleotide sequence