Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05905 and HGI48_RS05910 are separated by 132 nucleotides HGI48_RS05910 and HGI48_RS05915 are separated by 21 nucleotides HGI48_RS05915 and HGI48_RS05920 are separated by 176 nucleotides
HGI48_RS05905: HGI48_RS05905 - SPFH/Band 7/PHB domain protein, at 1,249,759 to 1,250,673
_RS05905
HGI48_RS05910: HGI48_RS05910 - 2Fe-2S ferredoxin-like protein, at 1,250,806 to 1,251,066
_RS05910
HGI48_RS05915: HGI48_RS05915 - ribonucleotide-diphosphate reductase subunit beta, at 1,251,088 to 1,252,218
_RS05915
HGI48_RS05920: HGI48_RS05920 - ribonucleoside-diphosphate reductase subunit alpha, at 1,252,395 to 1,254,683
_RS05920
Position (kb) 1251
1252
1253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1250.235 kb on + strand, within HGI48_RS05905 at 1250.235 kb on + strand, within HGI48_RS05905 at 1250.236 kb on - strand, within HGI48_RS05905 at 1250.379 kb on - strand, within HGI48_RS05905 at 1250.379 kb on - strand, within HGI48_RS05905 at 1250.409 kb on + strand, within HGI48_RS05905 at 1250.409 kb on + strand, within HGI48_RS05905 at 1250.409 kb on + strand, within HGI48_RS05905 at 1250.409 kb on + strand, within HGI48_RS05905 at 1250.410 kb on - strand, within HGI48_RS05905 at 1250.410 kb on - strand, within HGI48_RS05905 at 1250.472 kb on + strand, within HGI48_RS05905 at 1250.564 kb on + strand, within HGI48_RS05905 at 1250.564 kb on + strand at 1250.565 kb on - strand, within HGI48_RS05905 at 1250.594 kb on + strand at 1250.661 kb on + strand at 1250.738 kb on + strand at 1250.738 kb on + strand at 1250.738 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.807 kb on + strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.808 kb on - strand at 1250.811 kb on + strand at 1250.838 kb on + strand, within HGI48_RS05910 at 1250.838 kb on + strand, within HGI48_RS05910 at 1250.839 kb on - strand, within HGI48_RS05910 at 1250.839 kb on - strand at 1250.957 kb on + strand at 1250.986 kb on + strand, within HGI48_RS05910 at 1250.986 kb on + strand, within HGI48_RS05910 at 1251.049 kb on + strand at 1251.073 kb on + strand at 1251.073 kb on + strand at 1251.073 kb on + strand at 1251.074 kb on - strand at 1251.079 kb on + strand at 1251.079 kb on + strand at 1252.397 kb on - strand at 1252.397 kb on - strand at 1252.397 kb on - strand at 1252.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,250,235 + HGI48_RS05905 0.52 +0.9 1,250,235 + HGI48_RS05905 0.52 -0.4 1,250,236 - HGI48_RS05905 0.52 -0.9 1,250,379 - HGI48_RS05905 0.68 +0.6 1,250,379 - HGI48_RS05905 0.68 -0.1 1,250,409 + HGI48_RS05905 0.71 -0.3 1,250,409 + HGI48_RS05905 0.71 -2.4 1,250,409 + HGI48_RS05905 0.71 +1.7 1,250,409 + HGI48_RS05905 0.71 -0.2 1,250,410 - HGI48_RS05905 0.71 +0.3 1,250,410 - HGI48_RS05905 0.71 -1.9 1,250,472 + HGI48_RS05905 0.78 +0.1 1,250,564 + HGI48_RS05905 0.88 -0.1 1,250,564 + +0.4 1,250,565 - HGI48_RS05905 0.88 +0.2 1,250,594 + -0.0 1,250,661 + -1.5 1,250,738 + +0.5 1,250,738 + -1.0 1,250,738 + +1.1 1,250,807 + +1.1 1,250,807 + -0.8 1,250,807 + -1.6 1,250,807 + -2.6 1,250,807 + -0.5 1,250,807 + +0.0 1,250,807 + +0.4 1,250,807 + -0.1 1,250,808 - -0.8 1,250,808 - -1.9 1,250,808 - -1.2 1,250,808 - +0.8 1,250,808 - -0.9 1,250,808 - -0.6 1,250,808 - -0.2 1,250,808 - +0.3 1,250,808 - +0.7 1,250,808 - -0.6 1,250,808 - +0.2 1,250,811 + -0.4 1,250,838 + HGI48_RS05910 0.12 -0.3 1,250,838 + HGI48_RS05910 0.12 +0.4 1,250,839 - HGI48_RS05910 0.13 -3.5 1,250,839 - +0.4 1,250,957 + +1.4 1,250,986 + HGI48_RS05910 0.69 +0.3 1,250,986 + HGI48_RS05910 0.69 -2.2 1,251,049 + +0.9 1,251,073 + +0.6 1,251,073 + -1.9 1,251,073 + -0.1 1,251,074 - +1.7 1,251,079 + -0.9 1,251,079 + -0.9 1,252,397 - -0.0 1,252,397 - -0.0 1,252,397 - +0.7 1,252,397 - -0.5
Or see this region's nucleotide sequence