Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05860

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,236,639	+				-0.5
1,236,639	+				-1.4
1,236,639	+				+0.4
1,236,640	-				+0.4
1,236,641	+				+1.3
1,236,641	+				+1.4
1,236,641	+				-0.8
1,236,656	+				+1.1
1,236,657	-				+1.8
1,236,657	-				-0.2
1,236,697	+				+0.6
1,236,708	+				-0.0
1,236,708	+				+0.6
1,236,708	+				-0.5
1,236,743	+				+0.8
1,236,743	+				-0.3
1,236,743	+				+0.1
1,236,743	+				-0.5
1,236,744	-				+0.1
1,236,744	-				-0.5
1,236,744	-				+1.1
1,236,744	-				-0.6
1,236,811	+				-0.0
1,236,811	+				+0.4
1,236,811	+				+0.8
1,236,811	+				-0.3
1,236,812	-				+0.4
1,236,812	-				-0.4
1,236,812	-				-1.4
1,236,812	-				+0.4
1,236,812	-				+0.2
1,236,812	-				+0.4
1,236,812	-				+0.1
1,236,829	+				+0.8
1,236,829	+				-1.8
1,236,829	+				-1.2
1,236,829	+				+0.1
1,236,829	+				-1.6
1,236,830	-				+0.8
1,237,069	+		HGI48_RS05860	0.22	-0.9
1,237,070	-				-1.2
1,237,070	-		HGI48_RS05860	0.22	-0.4
1,237,095	+		HGI48_RS05860	0.24	-0.8
1,237,096	-		HGI48_RS05860	0.24	+0.4
1,237,096	-		HGI48_RS05860	0.24	-0.6
1,237,190	+		HGI48_RS05860	0.29	-0.4
1,237,190	+		HGI48_RS05860	0.29	-0.7
1,237,191	-		HGI48_RS05860	0.29	+0.8
1,237,191	-		HGI48_RS05860	0.29	-1.8
1,237,331	+		HGI48_RS05860	0.38	-1.6
1,237,331	+				+1.7
1,237,331	+		HGI48_RS05860	0.38	+0.2
1,237,407	+		HGI48_RS05860	0.42	-0.9
1,237,407	+		HGI48_RS05860	0.42	+0.2
1,237,408	-		HGI48_RS05860	0.42	+0.4
1,237,408	-		HGI48_RS05860	0.42	-0.3
1,237,779	-		HGI48_RS05860	0.64	-1.6
1,237,779	-		HGI48_RS05860	0.64	-0.8
1,237,956	+		HGI48_RS05860	0.75	-1.0
1,237,956	+		HGI48_RS05860	0.75	-1.6
1,237,957	-		HGI48_RS05860	0.75	+1.0
1,238,184	-		HGI48_RS05860	0.88	+0.6
1,238,273	-				-1.6
1,238,291	+				+0.4
1,238,291	+				+0.4
1,238,291	+				-0.0
1,238,291	+				-1.2
1,238,292	-				-0.7
1,238,292	-				-0.4
1,238,372	+				+1.1
1,238,373	-				+0.5
1,238,494	+				+0.1
1,238,494	+				+0.7
1,238,494	+				+0.1
1,238,494	+				-0.6
1,238,494	+				+0.4
1,238,494	+				-0.4
1,238,494	+				-0.9
1,238,494	+				+0.0
1,238,494	+				+0.4
1,238,494	+				+1.0
1,238,494	+				+0.1
1,238,495	-				+0.8
1,238,495	-				+0.0
1,238,495	-				-0.9
1,238,495	-				+0.4
1,238,495	-				-0.4
1,238,498	+				+0.1
1,238,498	+				-0.8
1,238,498	+				+0.2
1,238,498	+				-0.6
1,238,498	+				+0.7
1,238,499	-				+0.2
1,238,499	-				-1.0
1,238,594	+				+0.6
1,238,594	+				-1.6
1,238,595	-				-0.6
1,238,625	+				+0.6
1,238,670	-				-0.1
1,238,724	-				-0.6
1,238,724	-				-1.0
1,238,724	-				-0.9
1,238,762	+				-0.5
1,238,763	-				+0.4
1,238,766	-				-0.4
1,238,766	-				-0.9
1,238,807	+				+1.2
1,238,807	+				+0.5
1,238,838	-				+0.9
1,238,862	+				+0.6
1,238,868	-				-0.9
1,238,876	+				-0.2
1,238,876	+				-1.2
1,238,889	+				-0.7
1,238,905	+				+0.5
1,238,992	+				-0.2
1,238,999	+				-1.4
1,238,999	+				-0.5
1,238,999	+				-1.2
1,238,999	+				+0.8
1,239,000	-				-0.6
1,239,000	-				+0.4
1,239,019	+				+0.3
1,239,019	+				+0.9
1,239,157	+		HGI48_RS05865	0.15	-1.0
1,239,332	+		HGI48_RS05865	0.26	-0.4
1,239,332	+		HGI48_RS05865	0.26	-2.1
1,239,333	-		HGI48_RS05865	0.26	+0.3