Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04580

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04570 and HGI48_RS04575 are separated by 9 nucleotidesHGI48_RS04575 and HGI48_RS04580 overlap by 4 nucleotidesHGI48_RS04580 and HGI48_RS04585 are separated by 58 nucleotides HGI48_RS04570: HGI48_RS04570 - ABC transporter ATP-binding protein, at 958,009 to 959,133 _RS04570 HGI48_RS04575: HGI48_RS04575 - carbohydrate ABC transporter permease, at 959,143 to 959,970 _RS04575 HGI48_RS04580: HGI48_RS04580 - ABC transporter permease subunit, at 959,967 to 960,839 _RS04580 HGI48_RS04585: HGI48_RS04585 - ABC transporter substrate-binding protein, at 960,898 to 962,193 _RS04585 Position (kb) 959 960 961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 959.117 kb on - strandat 959.117 kb on - strandat 959.117 kb on - strandat 959.117 kb on - strandat 959.122 kb on + strandat 959.122 kb on + strandat 959.122 kb on + strandat 959.122 kb on + strandat 959.123 kb on - strandat 959.123 kb on - strandat 959.123 kb on - strandat 959.144 kb on + strandat 959.144 kb on + strandat 959.144 kb on + strandat 959.144 kb on + strandat 959.144 kb on + strandat 959.145 kb on - strandat 959.145 kb on - strandat 959.145 kb on - strandat 959.177 kb on + strandat 959.177 kb on + strandat 959.178 kb on - strandat 959.178 kb on - strandat 959.178 kb on - strandat 959.178 kb on - strandat 959.178 kb on - strandat 959.178 kb on - strandat 959.252 kb on + strand, within HGI48_RS04575at 959.252 kb on + strand, within HGI48_RS04575at 959.252 kb on + strand, within HGI48_RS04575at 959.253 kb on - strand, within HGI48_RS04575at 959.253 kb on - strand, within HGI48_RS04575at 959.253 kb on - strand, within HGI48_RS04575at 959.253 kb on - strand, within HGI48_RS04575at 959.414 kb on + strand, within HGI48_RS04575at 959.415 kb on - strandat 959.523 kb on + strand, within HGI48_RS04575at 959.524 kb on - strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strandat 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.525 kb on + strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.526 kb on - strand, within HGI48_RS04575at 959.534 kb on + strand, within HGI48_RS04575at 959.591 kb on + strand, within HGI48_RS04575at 959.592 kb on - strand, within HGI48_RS04575at 959.757 kb on + strand, within HGI48_RS04575at 959.761 kb on - strand, within HGI48_RS04575at 959.868 kb on + strand, within HGI48_RS04575at 959.868 kb on + strand, within HGI48_RS04575at 959.941 kb on + strandat 959.941 kb on + strandat 959.942 kb on - strandat 959.942 kb on - strandat 959.957 kb on + strandat 959.958 kb on - strandat 960.005 kb on - strandat 960.005 kb on - strandat 960.005 kb on - strandat 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.094 kb on + strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strandat 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.095 kb on - strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strandat 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strand, within HGI48_RS04580at 960.098 kb on + strandat 960.098 kb on + strandat 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.099 kb on - strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strandat 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.100 kb on + strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.101 kb on - strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.238 kb on + strand, within HGI48_RS04580at 960.239 kb on - strand, within HGI48_RS04580at 960.327 kb on - strand, within HGI48_RS04580at 960.327 kb on - strand, within HGI48_RS04580at 960.440 kb on + strand, within HGI48_RS04580at 960.440 kb on + strand, within HGI48_RS04580at 960.718 kb on + strand, within HGI48_RS04580at 960.739 kb on + strand, within HGI48_RS04580at 960.740 kb on - strand, within HGI48_RS04580at 960.899 kb on + strandat 960.900 kb on - strandat 960.900 kb on - strandat 960.900 kb on - strandat 960.907 kb on + strandat 960.908 kb on - strandat 960.908 kb on - strandat 960.984 kb on - strandat 960.984 kb on - strandat 960.984 kb on - strandat 961.079 kb on + strand, within HGI48_RS04585at 961.080 kb on - strand, within HGI48_RS04585at 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strandat 961.178 kb on + strand, within HGI48_RS04585at 961.178 kb on + strandat 961.299 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.415 kb on + strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strand, within HGI48_RS04585at 961.416 kb on - strandat 961.475 kb on - strand, within HGI48_RS04585at 961.475 kb on - strandat 961.700 kb on + strand, within HGI48_RS04585at 961.739 kb on + strand, within HGI48_RS04585at 961.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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959,117 - -1.9
959,117 - +1.1
959,117 - -0.8
959,117 - -0.1
959,122 + -0.1
959,122 + +1.4
959,122 + -1.6
959,122 + -1.4
959,123 - -1.9
959,123 - +0.8
959,123 - -0.3
959,144 + -0.4
959,144 + -1.3
959,144 + -1.0
959,144 + +0.4
959,144 + -0.3
959,145 - +0.6
959,145 - -0.2
959,145 - -2.1
959,177 + +0.4
959,177 + +0.9
959,178 - -0.1
959,178 - +1.4
959,178 - -0.1
959,178 - -1.8
959,178 - +1.2
959,178 - +0.4
959,252 + HGI48_RS04575 0.13 -0.1
959,252 + HGI48_RS04575 0.13 +1.3
959,252 + HGI48_RS04575 0.13 -0.2
959,253 - HGI48_RS04575 0.13 -1.0
959,253 - HGI48_RS04575 0.13 +2.2
959,253 - HGI48_RS04575 0.13 +0.7
959,253 - HGI48_RS04575 0.13 +0.4
959,414 + HGI48_RS04575 0.33 -0.2
959,415 - +1.2
959,523 + HGI48_RS04575 0.46 -0.3
959,524 - HGI48_RS04575 0.46 -1.4
959,525 + HGI48_RS04575 0.46 +0.3
959,525 + HGI48_RS04575 0.46 -1.4
959,525 + HGI48_RS04575 0.46 -0.9
959,525 + HGI48_RS04575 0.46 +0.1
959,525 + HGI48_RS04575 0.46 -0.2
959,525 + HGI48_RS04575 0.46 -0.4
959,525 + HGI48_RS04575 0.46 -0.1
959,525 + +0.4
959,525 + HGI48_RS04575 0.46 -0.4
959,525 + HGI48_RS04575 0.46 -0.7
959,525 + HGI48_RS04575 0.46 -0.5
959,526 - HGI48_RS04575 0.46 -2.6
959,526 - HGI48_RS04575 0.46 +0.6
959,526 - HGI48_RS04575 0.46 -0.8
959,526 - HGI48_RS04575 0.46 -0.3
959,526 - HGI48_RS04575 0.46 -1.1
959,526 - HGI48_RS04575 0.46 +0.9
959,526 - HGI48_RS04575 0.46 +0.4
959,534 + HGI48_RS04575 0.47 -1.1
959,591 + HGI48_RS04575 0.54 -1.4
959,592 - HGI48_RS04575 0.54 +1.2
959,757 + HGI48_RS04575 0.74 +0.4
959,761 - HGI48_RS04575 0.75 +0.8
959,868 + HGI48_RS04575 0.88 -2.4
959,868 + HGI48_RS04575 0.88 -2.9
959,941 + -3.1
959,941 + -0.4
959,942 - +1.4
959,942 - -1.6
959,957 + +0.2
959,958 - -0.8
960,005 - +0.4
960,005 - -1.0
960,005 - -0.5
960,094 + HGI48_RS04580 0.15 -0.4
960,094 + HGI48_RS04580 0.15 -0.9
960,094 + HGI48_RS04580 0.15 -0.3
960,094 + HGI48_RS04580 0.15 -2.0
960,094 + HGI48_RS04580 0.15 +0.4
960,095 - HGI48_RS04580 0.15 +1.8
960,095 - HGI48_RS04580 0.15 +0.0
960,095 - HGI48_RS04580 0.15 -1.3
960,095 - +0.4
960,095 - HGI48_RS04580 0.15 -0.9
960,095 - HGI48_RS04580 0.15 -0.1
960,095 - HGI48_RS04580 0.15 +0.3
960,095 - HGI48_RS04580 0.15 -3.1
960,095 - HGI48_RS04580 0.15 +0.2
960,098 + HGI48_RS04580 0.15 -0.3
960,098 + HGI48_RS04580 0.15 +0.9
960,098 + -1.1
960,098 + HGI48_RS04580 0.15 +0.8
960,098 + HGI48_RS04580 0.15 -1.9
960,098 + HGI48_RS04580 0.15 -2.0
960,098 + HGI48_RS04580 0.15 -1.1
960,098 + HGI48_RS04580 0.15 -1.1
960,098 + HGI48_RS04580 0.15 -0.4
960,098 + +0.4
960,098 + -1.1
960,099 - HGI48_RS04580 0.15 -1.6
960,099 - HGI48_RS04580 0.15 -0.4
960,099 - HGI48_RS04580 0.15 +0.5
960,099 - HGI48_RS04580 0.15 -2.1
960,099 - HGI48_RS04580 0.15 -1.6
960,099 - HGI48_RS04580 0.15 +0.0
960,099 - HGI48_RS04580 0.15 +0.1
960,100 + HGI48_RS04580 0.15 -1.1
960,100 + +1.4
960,100 + HGI48_RS04580 0.15 -0.6
960,100 + HGI48_RS04580 0.15 +1.7
960,100 + HGI48_RS04580 0.15 -0.1
960,100 + HGI48_RS04580 0.15 -0.9
960,100 + HGI48_RS04580 0.15 +0.3
960,101 - HGI48_RS04580 0.15 -0.4
960,101 - HGI48_RS04580 0.15 -2.1
960,101 - HGI48_RS04580 0.15 -0.6
960,101 - HGI48_RS04580 0.15 -1.1
960,101 - HGI48_RS04580 0.15 +0.4
960,238 + HGI48_RS04580 0.31 +0.2
960,238 + HGI48_RS04580 0.31 -0.8
960,238 + HGI48_RS04580 0.31 -1.1
960,239 - HGI48_RS04580 0.31 +0.1
960,327 - HGI48_RS04580 0.41 -0.0
960,327 - HGI48_RS04580 0.41 -1.3
960,440 + HGI48_RS04580 0.54 -0.4
960,440 + HGI48_RS04580 0.54 -1.0
960,718 + HGI48_RS04580 0.86 -0.1
960,739 + HGI48_RS04580 0.88 +0.8
960,740 - HGI48_RS04580 0.89 -0.6
960,899 + +1.6
960,900 - -0.6
960,900 - +2.1
960,900 - +0.7
960,907 + -1.6
960,908 - -0.7
960,908 - -1.1
960,984 - -0.6
960,984 - +1.0
960,984 - -1.9
961,079 + HGI48_RS04585 0.14 -2.4
961,080 - HGI48_RS04585 0.14 +0.1
961,178 + HGI48_RS04585 0.22 +2.1
961,178 + HGI48_RS04585 0.22 -0.3
961,178 + +2.8
961,178 + HGI48_RS04585 0.22 +0.1
961,178 + +2.0
961,299 + HGI48_RS04585 0.31 -1.6
961,415 + HGI48_RS04585 0.40 -1.0
961,415 + HGI48_RS04585 0.40 +0.9
961,415 + HGI48_RS04585 0.40 -1.0
961,415 + HGI48_RS04585 0.40 -0.0
961,415 + HGI48_RS04585 0.40 +0.6
961,416 - HGI48_RS04585 0.40 -0.7
961,416 - HGI48_RS04585 0.40 -0.9
961,416 - HGI48_RS04585 0.40 +0.1
961,416 - +2.0
961,475 - HGI48_RS04585 0.45 -2.1
961,475 - -0.6
961,700 + HGI48_RS04585 0.62 -0.4
961,739 + HGI48_RS04585 0.65 -3.0
961,740 - -1.1

Or see this region's nucleotide sequence