Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04550 and HGI48_RS04555 are separated by 188 nucleotides HGI48_RS04555 and HGI48_RS04560 are separated by 59 nucleotides
HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122
_RS04550
HGI48_RS04555: HGI48_RS04555 - LysR family transcriptional regulator, at 955,311 to 956,213
_RS04555
HGI48_RS04560: HGI48_RS04560 - LacI family DNA-binding transcriptional regulator, at 956,273 to 957,259
_RS04560
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand at 954.494 kb on - strand, within HGI48_RS04550 at 954.494 kb on - strand, within HGI48_RS04550 at 954.542 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.836 kb on + strand, within HGI48_RS04550 at 954.836 kb on + strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.837 kb on - strand, within HGI48_RS04550 at 954.846 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.937 kb on + strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 954.938 kb on - strand, within HGI48_RS04550 at 955.080 kb on + strand at 955.081 kb on - strand at 955.091 kb on - strand at 955.127 kb on + strand at 955.127 kb on + strand at 955.181 kb on - strand at 955.186 kb on + strand at 955.301 kb on - strand at 955.301 kb on - strand at 955.305 kb on - strand at 955.335 kb on + strand at 955.392 kb on - strand at 955.536 kb on + strand, within HGI48_RS04555 at 955.537 kb on - strand, within HGI48_RS04555 at 955.539 kb on + strand, within HGI48_RS04555 at 955.567 kb on - strand at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.629 kb on + strand, within HGI48_RS04555 at 955.630 kb on - strand at 955.630 kb on - strand, within HGI48_RS04555 at 955.630 kb on - strand at 955.630 kb on - strand at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand, within HGI48_RS04555 at 955.632 kb on + strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.633 kb on - strand, within HGI48_RS04555 at 955.649 kb on - strand, within HGI48_RS04555 at 955.679 kb on - strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.767 kb on + strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.768 kb on - strand, within HGI48_RS04555 at 955.787 kb on + strand, within HGI48_RS04555 at 956.004 kb on - strand, within HGI48_RS04555 at 956.004 kb on - strand, within HGI48_RS04555 at 956.084 kb on + strand, within HGI48_RS04555 at 956.130 kb on + strand at 956.130 kb on + strand at 956.130 kb on + strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.131 kb on - strand at 956.135 kb on + strand at 956.136 kb on - strand at 956.180 kb on + strand at 956.181 kb on - strand at 956.220 kb on - strand at 956.296 kb on + strand at 956.296 kb on + strand at 956.297 kb on - strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.700 kb on + strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand, within HGI48_RS04560 at 956.701 kb on - strand at 956.701 kb on - strand, within HGI48_RS04560 at 957.183 kb on + strand at 957.183 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 954,368 + HGI48_RS04550 0.23 -0.6 954,368 + HGI48_RS04550 0.23 -0.8 954,368 + HGI48_RS04550 0.23 -0.0 954,368 + HGI48_RS04550 0.23 -0.8 954,368 + HGI48_RS04550 0.23 -1.9 954,368 + +1.0 954,368 + HGI48_RS04550 0.23 -1.9 954,368 + HGI48_RS04550 0.23 +0.4 954,369 - HGI48_RS04550 0.23 -0.8 954,369 - HGI48_RS04550 0.23 +0.8 954,369 - HGI48_RS04550 0.23 -0.0 954,369 - HGI48_RS04550 0.23 -0.1 954,369 - HGI48_RS04550 0.23 -1.6 954,493 + HGI48_RS04550 0.35 +0.8 954,493 + HGI48_RS04550 0.35 -3.3 954,493 + HGI48_RS04550 0.35 -0.6 954,493 + -0.6 954,494 - HGI48_RS04550 0.35 -0.3 954,494 - HGI48_RS04550 0.35 -0.6 954,542 + HGI48_RS04550 0.40 -0.2 954,562 + HGI48_RS04550 0.42 +0.8 954,562 + HGI48_RS04550 0.42 -1.9 954,563 - HGI48_RS04550 0.43 -0.2 954,563 - HGI48_RS04550 0.43 -0.9 954,836 + HGI48_RS04550 0.71 -1.9 954,836 + HGI48_RS04550 0.71 +0.8 954,837 - HGI48_RS04550 0.71 +0.1 954,837 - HGI48_RS04550 0.71 +0.1 954,837 - HGI48_RS04550 0.71 +0.1 954,837 - HGI48_RS04550 0.71 -0.6 954,837 - HGI48_RS04550 0.71 -0.6 954,837 - HGI48_RS04550 0.71 +0.3 954,837 - HGI48_RS04550 0.71 -0.0 954,837 - HGI48_RS04550 0.71 -1.6 954,846 + HGI48_RS04550 0.72 -0.3 954,937 + HGI48_RS04550 0.81 +0.9 954,937 + HGI48_RS04550 0.81 -1.1 954,937 + HGI48_RS04550 0.81 +0.1 954,938 - HGI48_RS04550 0.81 -0.2 954,938 - HGI48_RS04550 0.81 +0.2 954,938 - +0.4 954,938 - HGI48_RS04550 0.81 +0.9 954,938 - HGI48_RS04550 0.81 -0.4 954,938 - HGI48_RS04550 0.81 -1.6 954,938 - HGI48_RS04550 0.81 -1.9 955,080 + -2.1 955,081 - -0.1 955,091 - +0.1 955,127 + +0.4 955,127 + -1.1 955,181 - -0.7 955,186 + -0.1 955,301 - -0.0 955,301 - -0.6 955,305 - +0.4 955,335 + -0.6 955,392 - -2.6 955,536 + HGI48_RS04555 0.25 -0.6 955,537 - HGI48_RS04555 0.25 -0.8 955,539 + HGI48_RS04555 0.25 +1.8 955,567 - +0.4 955,629 + HGI48_RS04555 0.35 -1.4 955,629 + HGI48_RS04555 0.35 -2.1 955,629 + HGI48_RS04555 0.35 -0.2 955,629 + HGI48_RS04555 0.35 +0.2 955,630 - +0.4 955,630 - HGI48_RS04555 0.35 -0.6 955,630 - +1.7 955,630 - +0.4 955,632 + HGI48_RS04555 0.36 +0.1 955,632 + +1.2 955,632 + HGI48_RS04555 0.36 -0.0 955,632 + HGI48_RS04555 0.36 +0.1 955,632 + HGI48_RS04555 0.36 -0.1 955,633 - HGI48_RS04555 0.36 -0.8 955,633 - HGI48_RS04555 0.36 -0.6 955,633 - HGI48_RS04555 0.36 +0.1 955,633 - HGI48_RS04555 0.36 +0.1 955,649 - HGI48_RS04555 0.37 +0.2 955,679 - HGI48_RS04555 0.41 -0.6 955,767 + HGI48_RS04555 0.50 -1.6 955,767 + HGI48_RS04555 0.50 +0.1 955,767 + HGI48_RS04555 0.50 -1.6 955,767 + HGI48_RS04555 0.50 -0.1 955,767 + HGI48_RS04555 0.50 -1.1 955,767 + HGI48_RS04555 0.50 -0.0 955,767 + HGI48_RS04555 0.50 -0.6 955,768 - HGI48_RS04555 0.51 +1.2 955,768 - HGI48_RS04555 0.51 +0.5 955,768 - HGI48_RS04555 0.51 -0.8 955,768 - HGI48_RS04555 0.51 -0.2 955,787 + HGI48_RS04555 0.53 -0.8 956,004 - HGI48_RS04555 0.77 +0.1 956,004 - HGI48_RS04555 0.77 -0.9 956,084 + HGI48_RS04555 0.86 +0.1 956,130 + -1.4 956,130 + +0.0 956,130 + -1.6 956,131 - -0.1 956,131 - -0.6 956,131 - -2.4 956,131 - -0.7 956,135 + +0.7 956,136 - -0.3 956,180 + -0.8 956,181 - -0.3 956,220 - +0.6 956,296 + -0.6 956,296 + +0.4 956,297 - +0.3 956,700 + HGI48_RS04560 0.43 +0.8 956,700 + HGI48_RS04560 0.43 +0.4 956,700 + HGI48_RS04560 0.43 -1.6 956,700 + -1.1 956,700 + HGI48_RS04560 0.43 +0.8 956,700 + HGI48_RS04560 0.43 -0.1 956,700 + HGI48_RS04560 0.43 +0.3 956,701 - HGI48_RS04560 0.43 +0.7 956,701 - HGI48_RS04560 0.43 +0.2 956,701 - +0.4 956,701 - HGI48_RS04560 0.43 -0.4 957,183 + -0.3 957,183 + -0.5
Or see this region's nucleotide sequence