Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04535 and HGI48_RS04540 are separated by 2 nucleotides HGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotides HGI48_RS04545 and HGI48_RS04550 are separated by 520 nucleotides
HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977
_RS04535
HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936
_RS04540
HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627
_RS04545
HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122
_RS04550
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 951.929 kb on + strand at 951.929 kb on + strand at 951.957 kb on + strand at 952.005 kb on + strand at 952.005 kb on + strand at 952.071 kb on + strand at 952.072 kb on - strand at 952.127 kb on - strand, within HGI48_RS04540 at 952.141 kb on + strand, within HGI48_RS04540 at 952.142 kb on - strand, within HGI48_RS04540 at 952.406 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.504 kb on + strand at 952.527 kb on - strand, within HGI48_RS04540 at 952.538 kb on + strand, within HGI48_RS04540 at 952.539 kb on - strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.623 kb on - strand, within HGI48_RS04540 at 952.632 kb on + strand at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.680 kb on + strand at 952.680 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.784 kb on - strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.821 kb on + strand, within HGI48_RS04540 at 952.881 kb on + strand at 952.881 kb on + strand at 952.882 kb on - strand at 952.951 kb on + strand at 952.951 kb on + strand at 953.008 kb on + strand at 953.009 kb on - strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.013 kb on - strand, within HGI48_RS04545 at 953.013 kb on - strand, within HGI48_RS04545 at 953.013 kb on - strand at 953.013 kb on - strand at 953.039 kb on + strand, within HGI48_RS04545 at 953.040 kb on - strand, within HGI48_RS04545 at 953.154 kb on - strand, within HGI48_RS04545 at 953.154 kb on - strand, within HGI48_RS04545 at 953.180 kb on + strand, within HGI48_RS04545 at 953.180 kb on + strand, within HGI48_RS04545 at 953.181 kb on - strand, within HGI48_RS04545 at 953.360 kb on + strand, within HGI48_RS04545 at 953.360 kb on + strand at 953.360 kb on + strand, within HGI48_RS04545 at 953.360 kb on + strand, within HGI48_RS04545 at 953.361 kb on - strand at 953.479 kb on - strand, within HGI48_RS04545 at 953.479 kb on - strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.500 kb on + strand, within HGI48_RS04545 at 953.501 kb on - strand, within HGI48_RS04545 at 953.501 kb on - strand, within HGI48_RS04545 at 953.600 kb on + strand at 953.601 kb on - strand at 953.668 kb on + strand at 953.761 kb on + strand at 953.842 kb on + strand at 954.000 kb on - strand at 954.065 kb on + strand at 954.083 kb on - strand at 954.138 kb on + strand at 954.150 kb on - strand at 954.245 kb on + strand at 954.245 kb on + strand at 954.248 kb on + strand, within HGI48_RS04550 at 954.248 kb on + strand, within HGI48_RS04550 at 954.248 kb on + strand, within HGI48_RS04550 at 954.249 kb on - strand at 954.249 kb on - strand, within HGI48_RS04550 at 954.249 kb on - strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand at 954.494 kb on - strand, within HGI48_RS04550 at 954.494 kb on - strand, within HGI48_RS04550 at 954.542 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 951,929 + +0.1 951,929 + +0.1 951,957 + -0.1 952,005 + -0.3 952,005 + -0.1 952,071 + +0.0 952,072 - +0.4 952,127 - HGI48_RS04540 0.15 -0.6 952,141 + HGI48_RS04540 0.17 -1.7 952,142 - HGI48_RS04540 0.17 -1.4 952,406 - HGI48_RS04540 0.45 -0.7 952,485 - HGI48_RS04540 0.53 -0.2 952,485 - HGI48_RS04540 0.53 -0.2 952,485 - HGI48_RS04540 0.53 +0.2 952,502 + HGI48_RS04540 0.55 +0.3 952,502 + HGI48_RS04540 0.55 -0.6 952,502 + HGI48_RS04540 0.55 +0.1 952,502 + HGI48_RS04540 0.55 +0.2 952,502 + HGI48_RS04540 0.55 +0.2 952,502 + HGI48_RS04540 0.55 +0.7 952,503 - HGI48_RS04540 0.55 +0.2 952,503 - HGI48_RS04540 0.55 -0.2 952,503 - HGI48_RS04540 0.55 -1.6 952,504 + -0.1 952,527 - HGI48_RS04540 0.57 -0.6 952,538 + HGI48_RS04540 0.58 -1.0 952,539 - HGI48_RS04540 0.58 -0.8 952,596 + HGI48_RS04540 0.64 -1.7 952,596 + HGI48_RS04540 0.64 +0.5 952,623 - HGI48_RS04540 0.67 +0.1 952,632 + +0.4 952,632 + HGI48_RS04540 0.68 +0.2 952,632 + HGI48_RS04540 0.68 -0.0 952,632 + HGI48_RS04540 0.68 -2.1 952,633 - HGI48_RS04540 0.68 +0.4 952,633 - HGI48_RS04540 0.68 -0.2 952,633 - HGI48_RS04540 0.68 -1.1 952,633 - -1.1 952,633 - HGI48_RS04540 0.68 +0.0 952,633 - HGI48_RS04540 0.68 -0.3 952,633 - HGI48_RS04540 0.68 -1.1 952,680 + +1.0 952,680 + HGI48_RS04540 0.73 +0.2 952,695 + HGI48_RS04540 0.75 +0.2 952,695 + HGI48_RS04540 0.75 +1.1 952,784 - HGI48_RS04540 0.84 -0.6 952,798 + HGI48_RS04540 0.85 -0.1 952,798 + HGI48_RS04540 0.85 -1.4 952,799 - HGI48_RS04540 0.86 -2.0 952,799 - HGI48_RS04540 0.86 -0.6 952,821 + HGI48_RS04540 0.88 -1.9 952,881 + -0.8 952,881 + +1.6 952,882 - -0.7 952,951 + -1.4 952,951 + -0.8 953,008 + -0.1 953,009 - HGI48_RS04545 0.11 -1.7 953,012 + HGI48_RS04545 0.12 -0.7 953,012 + HGI48_RS04545 0.12 -0.3 953,012 + HGI48_RS04545 0.12 -0.6 953,012 + HGI48_RS04545 0.12 -1.4 953,013 - HGI48_RS04545 0.12 -0.1 953,013 - HGI48_RS04545 0.12 +0.2 953,013 - -1.1 953,013 - -0.6 953,039 + HGI48_RS04545 0.16 -0.6 953,040 - HGI48_RS04545 0.16 +0.6 953,154 - HGI48_RS04545 0.32 -0.4 953,154 - HGI48_RS04545 0.32 +0.0 953,180 + HGI48_RS04545 0.36 -1.6 953,180 + HGI48_RS04545 0.36 -0.6 953,181 - HGI48_RS04545 0.36 +0.2 953,360 + HGI48_RS04545 0.62 +0.2 953,360 + -0.6 953,360 + HGI48_RS04545 0.62 -1.9 953,360 + HGI48_RS04545 0.62 -2.4 953,361 - +1.4 953,479 - HGI48_RS04545 0.79 -1.6 953,479 - HGI48_RS04545 0.79 -1.1 953,493 + HGI48_RS04545 0.81 +1.0 953,493 + HGI48_RS04545 0.81 +0.8 953,493 + HGI48_RS04545 0.81 -1.6 953,494 - HGI48_RS04545 0.81 -0.4 953,494 - HGI48_RS04545 0.81 -0.6 953,494 - HGI48_RS04545 0.81 -0.2 953,494 - HGI48_RS04545 0.81 -0.6 953,500 + HGI48_RS04545 0.82 +0.6 953,501 - HGI48_RS04545 0.82 -0.8 953,501 - HGI48_RS04545 0.82 +0.6 953,600 + -1.1 953,601 - -2.6 953,668 + -0.1 953,761 + -0.1 953,842 + +0.2 954,000 - -0.4 954,065 + +1.4 954,083 - -0.5 954,138 + -1.1 954,150 - +0.0 954,245 + -0.4 954,245 + -2.7 954,248 + HGI48_RS04550 0.10 -1.4 954,248 + HGI48_RS04550 0.10 -0.3 954,248 + HGI48_RS04550 0.10 +0.6 954,249 - +0.9 954,249 - HGI48_RS04550 0.10 -0.6 954,249 - HGI48_RS04550 0.10 -1.7 954,368 + HGI48_RS04550 0.23 -0.6 954,368 + HGI48_RS04550 0.23 -0.8 954,368 + HGI48_RS04550 0.23 -0.0 954,368 + HGI48_RS04550 0.23 -0.8 954,368 + HGI48_RS04550 0.23 -1.9 954,368 + +1.0 954,368 + HGI48_RS04550 0.23 -1.9 954,368 + HGI48_RS04550 0.23 +0.4 954,369 - HGI48_RS04550 0.23 -0.8 954,369 - HGI48_RS04550 0.23 +0.8 954,369 - HGI48_RS04550 0.23 -0.0 954,369 - HGI48_RS04550 0.23 -0.1 954,369 - HGI48_RS04550 0.23 -1.6 954,493 + HGI48_RS04550 0.35 +0.8 954,493 + HGI48_RS04550 0.35 -3.3 954,493 + HGI48_RS04550 0.35 -0.6 954,493 + -0.6 954,494 - HGI48_RS04550 0.35 -0.3 954,494 - HGI48_RS04550 0.35 -0.6 954,542 + HGI48_RS04550 0.40 -0.2 954,562 + HGI48_RS04550 0.42 +0.8 954,562 + HGI48_RS04550 0.42 -1.9 954,563 - HGI48_RS04550 0.43 -0.2 954,563 - HGI48_RS04550 0.43 -0.9
Or see this region's nucleotide sequence