Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04315

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04300 and HGI48_RS04305 are separated by 155 nucleotidesHGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotidesHGI48_RS04310 and HGI48_RS04315 are separated by 58 nucleotidesHGI48_RS04315 and HGI48_RS04320 are separated by 111 nucleotides HGI48_RS04300: HGI48_RS04300 - SsrA-binding protein SmpB, at 901,979 to 902,461 _RS04300 HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051 _RS04305 HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337 _RS04310 HGI48_RS04315: HGI48_RS04315 - outer membrane protein assembly factor BamE, at 903,396 to 903,740 _RS04315 HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513 _RS04320 Position (kb) 903 904Strain fitness (log2 ratio) -2 -1 0 1 2at 902.461 kb on + strandat 902.462 kb on - strandat 902.462 kb on - strandat 902.473 kb on + strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.474 kb on - strandat 902.580 kb on + strandat 902.598 kb on - strandat 902.616 kb on + strandat 902.668 kb on + strand, within HGI48_RS04305at 902.815 kb on - strandat 902.835 kb on + strandat 902.916 kb on + strand, within HGI48_RS04305at 902.916 kb on + strand, within HGI48_RS04305at 902.916 kb on + strand, within HGI48_RS04305at 902.917 kb on - strandat 903.040 kb on + strandat 903.041 kb on - strandat 903.041 kb on - strandat 903.041 kb on - strandat 903.140 kb on - strand, within HGI48_RS04310at 903.295 kb on - strandat 903.397 kb on + strandat 903.397 kb on + strandat 903.398 kb on - strandat 903.398 kb on - strandat 903.514 kb on + strand, within HGI48_RS04315at 903.514 kb on + strand, within HGI48_RS04315at 903.515 kb on - strand, within HGI48_RS04315at 903.515 kb on - strand, within HGI48_RS04315at 903.517 kb on + strand, within HGI48_RS04315at 903.517 kb on + strand, within HGI48_RS04315at 903.517 kb on + strand, within HGI48_RS04315at 903.518 kb on - strand, within HGI48_RS04315at 903.568 kb on + strand, within HGI48_RS04315at 903.568 kb on + strand, within HGI48_RS04315at 903.568 kb on + strand, within HGI48_RS04315at 903.568 kb on + strandat 903.569 kb on - strand, within HGI48_RS04315at 903.609 kb on + strand, within HGI48_RS04315at 903.628 kb on + strand, within HGI48_RS04315at 903.629 kb on - strand, within HGI48_RS04315at 903.629 kb on - strand, within HGI48_RS04315at 903.660 kb on + strand, within HGI48_RS04315at 903.661 kb on - strand, within HGI48_RS04315at 903.661 kb on - strand, within HGI48_RS04315at 903.695 kb on + strand, within HGI48_RS04315at 903.695 kb on + strand, within HGI48_RS04315at 903.695 kb on + strand, within HGI48_RS04315at 903.696 kb on - strand, within HGI48_RS04315at 903.732 kb on - strandat 903.741 kb on - strandat 903.747 kb on + strandat 903.747 kb on + strandat 903.747 kb on + strandat 903.748 kb on - strandat 903.764 kb on + strandat 903.764 kb on + strandat 903.764 kb on + strandat 903.764 kb on + strandat 903.765 kb on - strandat 903.765 kb on - strandat 903.778 kb on + strandat 903.778 kb on + strandat 903.778 kb on + strandat 903.778 kb on + strandat 903.778 kb on + strandat 903.779 kb on - strandat 903.779 kb on - strandat 903.779 kb on - strandat 903.779 kb on - strandat 903.779 kb on - strandat 903.779 kb on - strandat 903.781 kb on + strandat 903.781 kb on + strandat 903.781 kb on + strandat 903.781 kb on + strandat 903.782 kb on - strandat 903.782 kb on - strandat 903.782 kb on - strandat 903.782 kb on - strandat 903.818 kb on + strandat 903.853 kb on + strandat 903.853 kb on + strandat 903.854 kb on - strandat 903.995 kb on + strandat 904.006 kb on + strandat 904.007 kb on - strandat 904.064 kb on + strand, within HGI48_RS04320at 904.064 kb on + strand, within HGI48_RS04320at 904.176 kb on - strandat 904.510 kb on - strand, within HGI48_RS04320at 904.510 kb on - strand, within HGI48_RS04320at 904.527 kb on + strand, within HGI48_RS04320at 904.527 kb on + strand, within HGI48_RS04320at 904.528 kb on - strand, within HGI48_RS04320at 904.528 kb on - strand, within HGI48_RS04320at 904.528 kb on - strand, within HGI48_RS04320at 904.537 kb on + strand, within HGI48_RS04320at 904.537 kb on + strandat 904.618 kb on + strand, within HGI48_RS04320at 904.619 kb on - strand, within HGI48_RS04320

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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902,461 + +0.0
902,462 - -1.6
902,462 - +0.5
902,473 + -1.1
902,474 - +1.0
902,474 - +0.0
902,474 - -2.5
902,474 - -2.1
902,474 - -0.2
902,474 - +0.5
902,474 - +0.2
902,474 - -0.2
902,580 + -1.5
902,598 - -1.4
902,616 + -2.0
902,668 + HGI48_RS04305 0.12 -1.5
902,815 - -1.1
902,835 + -1.1
902,916 + HGI48_RS04305 0.69 -0.5
902,916 + HGI48_RS04305 0.69 -1.1
902,916 + HGI48_RS04305 0.69 -0.9
902,917 - -1.1
903,040 + -0.5
903,041 - -1.1
903,041 - -1.0
903,041 - -1.1
903,140 - HGI48_RS04310 0.33 +1.1
903,295 - -0.1
903,397 + -0.2
903,397 + -1.4
903,398 - +0.5
903,398 - +0.1
903,514 + HGI48_RS04315 0.34 +0.7
903,514 + HGI48_RS04315 0.34 -0.8
903,515 - HGI48_RS04315 0.34 +0.0
903,515 - HGI48_RS04315 0.34 -2.1
903,517 + HGI48_RS04315 0.35 -1.9
903,517 + HGI48_RS04315 0.35 -1.9
903,517 + HGI48_RS04315 0.35 -1.6
903,518 - HGI48_RS04315 0.35 -0.9
903,568 + HGI48_RS04315 0.50 -0.9
903,568 + HGI48_RS04315 0.50 -1.1
903,568 + HGI48_RS04315 0.50 -1.1
903,568 + +1.2
903,569 - HGI48_RS04315 0.50 -0.8
903,609 + HGI48_RS04315 0.62 +2.0
903,628 + HGI48_RS04315 0.67 +0.1
903,629 - HGI48_RS04315 0.68 -0.3
903,629 - HGI48_RS04315 0.68 -1.0
903,660 + HGI48_RS04315 0.77 -1.0
903,661 - HGI48_RS04315 0.77 -0.7
903,661 - HGI48_RS04315 0.77 -1.9
903,695 + HGI48_RS04315 0.87 -1.5
903,695 + HGI48_RS04315 0.87 +0.7
903,695 + HGI48_RS04315 0.87 -1.3
903,696 - HGI48_RS04315 0.87 +0.1
903,732 - -0.7
903,741 - -0.1
903,747 + -0.9
903,747 + -1.8
903,747 + -1.4
903,748 - -0.4
903,764 + -1.4
903,764 + +0.2
903,764 + -2.5
903,764 + +1.1
903,765 - -0.4
903,765 - -0.1
903,778 + -0.1
903,778 + -0.8
903,778 + -0.6
903,778 + +1.5
903,778 + -0.9
903,779 - -0.9
903,779 - +0.2
903,779 - +0.0
903,779 - +0.5
903,779 - +0.8
903,779 - -0.1
903,781 + -0.8
903,781 + -1.4
903,781 + -0.8
903,781 + -1.1
903,782 - -0.4
903,782 - +0.0
903,782 - -0.1
903,782 - -0.0
903,818 + -1.5
903,853 + +0.5
903,853 + +0.0
903,854 - +0.7
903,995 + -1.0
904,006 + +0.5
904,007 - +0.7
904,064 + HGI48_RS04320 0.13 -0.5
904,064 + HGI48_RS04320 0.13 -0.2
904,176 - +1.9
904,510 - HGI48_RS04320 0.40 -0.6
904,510 - HGI48_RS04320 0.40 -1.1
904,527 + HGI48_RS04320 0.41 -2.7
904,527 + HGI48_RS04320 0.41 -1.1
904,528 - HGI48_RS04320 0.41 -1.9
904,528 - HGI48_RS04320 0.41 -1.6
904,528 - HGI48_RS04320 0.41 +0.5
904,537 + HGI48_RS04320 0.41 +0.9
904,537 + -0.5
904,618 + HGI48_RS04320 0.46 +0.6
904,619 - HGI48_RS04320 0.46 -0.9

Or see this region's nucleotide sequence