Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04290 and HGI48_RS04300 are separated by 598 nucleotides HGI48_RS04300 and HGI48_RS04305 are separated by 155 nucleotides HGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotides HGI48_RS04310 and HGI48_RS04315 are separated by 58 nucleotides
HGI48_RS04290: HGI48_RS04290 - tyrosine-type recombinase/integrase, at 900,160 to 901,380
_RS04290
HGI48_RS04300: HGI48_RS04300 - SsrA-binding protein SmpB, at 901,979 to 902,461
_RS04300
HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051
_RS04305
HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337
_RS04310
HGI48_RS04315: HGI48_RS04315 - outer membrane protein assembly factor BamE, at 903,396 to 903,740
_RS04315
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1 at 900.988 kb on - strand, within HGI48_RS04290 at 900.993 kb on + strand at 901.010 kb on - strand, within HGI48_RS04290 at 901.148 kb on + strand, within HGI48_RS04290 at 901.148 kb on + strand, within HGI48_RS04290 at 901.148 kb on + strand, within HGI48_RS04290 at 901.149 kb on - strand, within HGI48_RS04290 at 901.149 kb on - strand, within HGI48_RS04290 at 901.187 kb on + strand, within HGI48_RS04290 at 901.188 kb on - strand, within HGI48_RS04290 at 901.193 kb on + strand at 901.194 kb on - strand, within HGI48_RS04290 at 901.194 kb on - strand, within HGI48_RS04290 at 901.194 kb on - strand, within HGI48_RS04290 at 901.240 kb on - strand, within HGI48_RS04290 at 901.241 kb on + strand, within HGI48_RS04290 at 901.242 kb on - strand, within HGI48_RS04290 at 901.242 kb on - strand, within HGI48_RS04290 at 901.369 kb on + strand at 901.369 kb on + strand at 901.369 kb on + strand at 901.370 kb on - strand at 901.370 kb on - strand at 901.419 kb on + strand at 901.422 kb on + strand at 901.422 kb on + strand at 901.422 kb on + strand at 901.422 kb on + strand at 901.423 kb on - strand at 901.423 kb on - strand at 901.423 kb on - strand at 901.449 kb on + strand at 901.462 kb on + strand at 901.602 kb on + strand at 901.602 kb on + strand at 901.602 kb on + strand at 901.602 kb on + strand at 901.603 kb on - strand at 901.749 kb on + strand at 901.806 kb on + strand at 901.945 kb on - strand at 901.947 kb on - strand at 901.966 kb on - strand at 901.966 kb on - strand at 901.971 kb on - strand at 902.197 kb on + strand at 902.271 kb on + strand, within HGI48_RS04300 at 902.271 kb on + strand, within HGI48_RS04300 at 902.298 kb on + strand, within HGI48_RS04300 at 902.298 kb on + strand, within HGI48_RS04300 at 902.298 kb on + strand, within HGI48_RS04300 at 902.299 kb on - strand at 902.311 kb on + strand, within HGI48_RS04300 at 902.461 kb on + strand at 902.462 kb on - strand at 902.462 kb on - strand at 902.473 kb on + strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.474 kb on - strand at 902.580 kb on + strand at 902.598 kb on - strand at 902.616 kb on + strand at 902.668 kb on + strand, within HGI48_RS04305 at 902.815 kb on - strand at 902.835 kb on + strand at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.917 kb on - strand at 903.040 kb on + strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.140 kb on - strand, within HGI48_RS04310 at 903.295 kb on - strand at 903.397 kb on + strand at 903.397 kb on + strand at 903.398 kb on - strand at 903.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 900,988 - HGI48_RS04290 0.68 -0.0 900,993 + -1.1 901,010 - HGI48_RS04290 0.70 -1.0 901,148 + HGI48_RS04290 0.81 -0.3 901,148 + HGI48_RS04290 0.81 +0.1 901,148 + HGI48_RS04290 0.81 -0.5 901,149 - HGI48_RS04290 0.81 -1.3 901,149 - HGI48_RS04290 0.81 +0.5 901,187 + HGI48_RS04290 0.84 +0.1 901,188 - HGI48_RS04290 0.84 +0.1 901,193 + +1.0 901,194 - HGI48_RS04290 0.85 +0.6 901,194 - HGI48_RS04290 0.85 -0.5 901,194 - HGI48_RS04290 0.85 -0.8 901,240 - HGI48_RS04290 0.88 -0.5 901,241 + HGI48_RS04290 0.89 -0.4 901,242 - HGI48_RS04290 0.89 -1.3 901,242 - HGI48_RS04290 0.89 +1.1 901,369 + +1.6 901,369 + +0.3 901,369 + -2.4 901,370 - +1.0 901,370 - +0.1 901,419 + +0.7 901,422 + +0.1 901,422 + -0.2 901,422 + -1.9 901,422 + +0.5 901,423 - -0.4 901,423 - -1.2 901,423 - +0.1 901,449 + -0.3 901,462 + -0.5 901,602 + -1.9 901,602 + +0.7 901,602 + -0.9 901,602 + -0.5 901,603 - +0.5 901,749 + -1.5 901,806 + -1.5 901,945 - -1.0 901,947 - +0.0 901,966 - +0.0 901,966 - -0.8 901,971 - +0.0 902,197 + +0.9 902,271 + HGI48_RS04300 0.60 -0.3 902,271 + HGI48_RS04300 0.60 +0.5 902,298 + HGI48_RS04300 0.66 -0.3 902,298 + HGI48_RS04300 0.66 -2.5 902,298 + HGI48_RS04300 0.66 -0.5 902,299 - +0.5 902,311 + HGI48_RS04300 0.69 +1.1 902,461 + +0.0 902,462 - -1.6 902,462 - +0.5 902,473 + -1.1 902,474 - +1.0 902,474 - +0.0 902,474 - -2.5 902,474 - -2.1 902,474 - -0.2 902,474 - +0.5 902,474 - +0.2 902,474 - -0.2 902,580 + -1.5 902,598 - -1.4 902,616 + -2.0 902,668 + HGI48_RS04305 0.12 -1.5 902,815 - -1.1 902,835 + -1.1 902,916 + HGI48_RS04305 0.69 -0.5 902,916 + HGI48_RS04305 0.69 -1.1 902,916 + HGI48_RS04305 0.69 -0.9 902,917 - -1.1 903,040 + -0.5 903,041 - -1.1 903,041 - -1.0 903,041 - -1.1 903,140 - HGI48_RS04310 0.33 +1.1 903,295 - -0.1 903,397 + -0.2 903,397 + -1.4 903,398 - +0.5 903,398 - +0.1
Or see this region's nucleotide sequence