Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04260 and HGI48_RS04265 overlap by 11 nucleotides HGI48_RS04265 and HGI48_RS04270 overlap by 8 nucleotides HGI48_RS04270 and HGI48_RS04275 overlap by 4 nucleotides HGI48_RS04275 and HGI48_RS04280 are separated by 1 nucleotides HGI48_RS04280 and HGI48_RS04285 are separated by 202 nucleotides
HGI48_RS04260: HGI48_RS04260 - hypothetical protein, at 896,358 to 896,693
_RS04260
HGI48_RS04265: HGI48_RS04265 - hypothetical protein, at 896,683 to 897,033
_RS04265
HGI48_RS04270: HGI48_RS04270 - hypothetical protein, at 897,026 to 897,436
_RS04270
HGI48_RS04275: HGI48_RS04275 - hypothetical protein, at 897,433 to 897,669
_RS04275
HGI48_RS04280: HGI48_RS04280 - hypothetical protein, at 897,671 to 898,135
_RS04280
HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083
_RS04285
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 896.889 kb on - strand, within HGI48_RS04265 at 897.037 kb on - strand at 897.103 kb on + strand, within HGI48_RS04270 at 897.104 kb on - strand, within HGI48_RS04270 at 897.104 kb on - strand, within HGI48_RS04270 at 897.244 kb on + strand, within HGI48_RS04270 at 897.360 kb on + strand at 897.648 kb on + strand at 897.751 kb on - strand, within HGI48_RS04280 at 897.872 kb on - strand, within HGI48_RS04280 at 898.149 kb on + strand at 898.183 kb on + strand at 898.214 kb on + strand at 898.249 kb on + strand at 898.270 kb on - strand at 898.291 kb on - strand at 898.304 kb on + strand at 898.311 kb on - strand at 898.341 kb on + strand at 898.419 kb on + strand at 898.420 kb on - strand at 898.426 kb on - strand at 898.467 kb on - strand at 898.516 kb on - strand, within HGI48_RS04285 at 898.716 kb on - strand, within HGI48_RS04285 at 898.716 kb on - strand, within HGI48_RS04285 at 898.872 kb on - strand, within HGI48_RS04285 at 899.025 kb on + strand, within HGI48_RS04285 at 899.029 kb on + strand, within HGI48_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 896,889 - HGI48_RS04265 0.59 -0.1 897,037 - -0.1 897,103 + HGI48_RS04270 0.19 -1.5 897,104 - HGI48_RS04270 0.19 -0.3 897,104 - HGI48_RS04270 0.19 +0.5 897,244 + HGI48_RS04270 0.53 +0.1 897,360 + +1.2 897,648 + +0.5 897,751 - HGI48_RS04280 0.17 -1.5 897,872 - HGI48_RS04280 0.43 +1.3 898,149 + -0.4 898,183 + -0.1 898,214 + -1.2 898,249 + -0.1 898,270 - -2.4 898,291 - +0.6 898,304 + -1.1 898,311 - +0.0 898,341 + -1.3 898,419 + -0.5 898,420 - +0.9 898,426 - -0.1 898,467 - -2.4 898,516 - HGI48_RS04285 0.10 -1.5 898,716 - HGI48_RS04285 0.22 -1.0 898,716 - HGI48_RS04285 0.22 -1.5 898,872 - HGI48_RS04285 0.31 +0.0 899,025 + HGI48_RS04285 0.39 -0.5 899,029 + HGI48_RS04285 0.40 +0.2
Or see this region's nucleotide sequence