Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides HGI48_RS04240 and HGI48_RS04245 are separated by 36 nucleotides HGI48_RS04245 and HGI48_RS04250 are separated by 362 nucleotides
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
HGI48_RS04245: HGI48_RS04245 - DUF4755 domain-containing protein, at 893,677 to 894,171
_RS04245
HGI48_RS04250: HGI48_RS04250 - MobA/MobL family protein, at 894,534 to 895,835
_RS04250
Position (kb) 893
894 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.352 kb on - strand at 892.506 kb on - strand at 892.793 kb on + strand at 892.810 kb on + strand at 892.868 kb on + strand at 892.919 kb on - strand at 893.001 kb on + strand at 893.138 kb on - strand at 893.242 kb on + strand at 893.310 kb on + strand, within HGI48_RS04240 at 893.313 kb on - strand, within HGI48_RS04240 at 893.472 kb on + strand, within HGI48_RS04240 at 893.892 kb on + strand, within HGI48_RS04245 at 893.983 kb on + strand, within HGI48_RS04245 at 893.997 kb on + strand, within HGI48_RS04245 at 894.052 kb on + strand, within HGI48_RS04245 at 894.101 kb on + strand, within HGI48_RS04245 at 894.208 kb on + strand at 894.220 kb on + strand at 894.221 kb on - strand at 894.221 kb on - strand at 894.348 kb on - strand at 894.432 kb on - strand at 894.535 kb on + strand at 894.568 kb on + strand at 894.569 kb on - strand at 894.569 kb on - strand at 894.588 kb on - strand at 894.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 892,352 - -0.4 892,506 - -1.8 892,793 + -0.8 892,810 + -0.2 892,868 + -0.3 892,919 - -0.1 893,001 + +1.9 893,138 - -0.5 893,242 + -1.1 893,310 + HGI48_RS04240 0.12 +0.5 893,313 - HGI48_RS04240 0.13 -1.4 893,472 + HGI48_RS04240 0.55 -2.7 893,892 + HGI48_RS04245 0.43 -1.0 893,983 + HGI48_RS04245 0.62 +0.1 893,997 + HGI48_RS04245 0.65 -0.1 894,052 + HGI48_RS04245 0.76 -0.2 894,101 + HGI48_RS04245 0.86 -1.1 894,208 + -0.2 894,220 + -0.1 894,221 - -0.4 894,221 - -0.1 894,348 - -1.1 894,432 - -2.4 894,535 + -0.3 894,568 + +1.0 894,569 - +0.9 894,569 - +0.4 894,588 - -0.3 894,636 - +1.3
Or see this region's nucleotide sequence