Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04225 and HGI48_RS04230 are separated by 584 nucleotides HGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides
HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498
_RS04225
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 889.183 kb on + strand at 889.246 kb on + strand, within HGI48_RS04225 at 889.253 kb on + strand, within HGI48_RS04225 at 889.254 kb on - strand at 889.254 kb on - strand, within HGI48_RS04225 at 889.254 kb on - strand, within HGI48_RS04225 at 889.254 kb on - strand, within HGI48_RS04225 at 889.322 kb on - strand at 889.418 kb on + strand at 889.419 kb on - strand, within HGI48_RS04225 at 889.448 kb on - strand, within HGI48_RS04225 at 889.468 kb on + strand at 889.503 kb on + strand at 889.504 kb on - strand at 889.533 kb on - strand at 889.535 kb on + strand at 889.614 kb on + strand at 889.622 kb on - strand at 889.770 kb on - strand at 889.873 kb on + strand at 889.979 kb on - strand at 889.999 kb on + strand at 889.999 kb on + strand at 889.999 kb on + strand at 890.004 kb on + strand at 890.004 kb on + strand at 890.004 kb on + strand at 890.005 kb on - strand at 890.007 kb on + strand at 890.010 kb on + strand at 890.010 kb on + strand at 890.011 kb on - strand at 890.011 kb on - strand at 890.011 kb on - strand at 890.013 kb on + strand at 890.014 kb on - strand at 890.050 kb on + strand at 890.055 kb on + strand at 890.055 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.114 kb on + strand at 890.115 kb on - strand at 890.123 kb on + strand at 890.350 kb on - strand, within HGI48_RS04230 at 890.350 kb on - strand, within HGI48_RS04230 at 890.391 kb on + strand, within HGI48_RS04230 at 890.392 kb on - strand, within HGI48_RS04230 at 890.392 kb on - strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand, within HGI48_RS04230 at 890.519 kb on + strand at 890.519 kb on + strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.520 kb on - strand, within HGI48_RS04230 at 890.523 kb on + strand, within HGI48_RS04230 at 890.529 kb on + strand, within HGI48_RS04230 at 890.529 kb on + strand, within HGI48_RS04230 at 890.530 kb on - strand, within HGI48_RS04230 at 890.628 kb on - strand at 890.628 kb on - strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.657 kb on + strand, within HGI48_RS04230 at 890.670 kb on + strand, within HGI48_RS04230 at 890.671 kb on - strand, within HGI48_RS04230 at 890.730 kb on - strand, within HGI48_RS04230 at 890.766 kb on + strand, within HGI48_RS04230 at 890.766 kb on + strand, within HGI48_RS04230 at 890.767 kb on - strand, within HGI48_RS04230 at 890.772 kb on + strand, within HGI48_RS04230 at 890.772 kb on + strand, within HGI48_RS04230 at 890.785 kb on + strand, within HGI48_RS04230 at 890.785 kb on + strand, within HGI48_RS04230 at 890.786 kb on - strand, within HGI48_RS04230 at 890.786 kb on - strand, within HGI48_RS04230 at 890.843 kb on - strand, within HGI48_RS04230 at 890.843 kb on - strand, within HGI48_RS04230 at 890.872 kb on - strand, within HGI48_RS04230 at 890.911 kb on - strand at 890.912 kb on + strand at 890.912 kb on + strand, within HGI48_RS04230 at 890.913 kb on - strand at 891.048 kb on + strand, within HGI48_RS04230 at 891.049 kb on - strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.061 kb on + strand, within HGI48_RS04230 at 891.062 kb on - strand, within HGI48_RS04230 at 891.064 kb on + strand, within HGI48_RS04230 at 891.065 kb on - strand, within HGI48_RS04230 at 891.113 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.130 kb on + strand, within HGI48_RS04230 at 891.131 kb on - strand, within HGI48_RS04230 at 891.144 kb on + strand at 891.144 kb on + strand at 891.145 kb on - strand at 891.171 kb on + strand at 891.214 kb on + strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.656 kb on + strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.668 kb on + strand at 891.685 kb on + strand at 891.686 kb on - strand at 891.686 kb on - strand at 891.729 kb on - strand at 891.756 kb on + strand at 891.858 kb on + strand at 891.859 kb on - strand at 891.888 kb on + strand at 891.902 kb on - strand at 891.911 kb on + strand at 891.939 kb on - strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.108 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 889,183 + +1.6 889,246 + HGI48_RS04225 0.17 +0.1 889,253 + HGI48_RS04225 0.19 -0.5 889,254 - +1.2 889,254 - HGI48_RS04225 0.19 -0.5 889,254 - HGI48_RS04225 0.19 -2.9 889,254 - HGI48_RS04225 0.19 -1.0 889,322 - +0.9 889,418 + +1.0 889,419 - HGI48_RS04225 0.74 -1.1 889,448 - HGI48_RS04225 0.83 -0.1 889,468 + +0.0 889,503 + +0.1 889,504 - +0.5 889,533 - -0.2 889,535 + -1.9 889,614 + -0.0 889,622 - -0.1 889,770 - +0.9 889,873 + +0.0 889,979 - +0.9 889,999 + +0.5 889,999 + +0.5 889,999 + -2.0 890,004 + -1.5 890,004 + +1.5 890,004 + -1.9 890,005 - +0.5 890,007 + +0.9 890,010 + -0.7 890,010 + +0.5 890,011 - +1.1 890,011 - -0.5 890,011 - -0.1 890,013 + +0.5 890,014 - +1.0 890,050 + -0.2 890,055 + -0.4 890,055 + -1.5 890,114 + +0.8 890,114 + -0.3 890,114 + -0.6 890,114 + +0.9 890,115 - -1.5 890,123 + -0.5 890,350 - HGI48_RS04230 0.23 -1.1 890,350 - HGI48_RS04230 0.23 +0.2 890,391 + HGI48_RS04230 0.26 -0.5 890,392 - HGI48_RS04230 0.26 -0.4 890,392 - HGI48_RS04230 0.26 -0.5 890,519 + HGI48_RS04230 0.37 +0.7 890,519 + HGI48_RS04230 0.37 +0.8 890,519 + HGI48_RS04230 0.37 -1.4 890,519 + HGI48_RS04230 0.37 +0.1 890,519 + HGI48_RS04230 0.37 -0.9 890,519 + +0.9 890,519 + HGI48_RS04230 0.37 +0.8 890,520 - HGI48_RS04230 0.37 +1.2 890,520 - HGI48_RS04230 0.37 +0.5 890,520 - HGI48_RS04230 0.37 +0.7 890,523 + HGI48_RS04230 0.37 -1.2 890,529 + HGI48_RS04230 0.38 +0.2 890,529 + HGI48_RS04230 0.38 -1.9 890,530 - HGI48_RS04230 0.38 -2.0 890,628 - +1.5 890,628 - HGI48_RS04230 0.46 +0.3 890,657 + HGI48_RS04230 0.49 -0.3 890,657 + HGI48_RS04230 0.49 +2.0 890,657 + HGI48_RS04230 0.49 -0.8 890,670 + HGI48_RS04230 0.50 +1.1 890,671 - HGI48_RS04230 0.50 +0.7 890,730 - HGI48_RS04230 0.55 -0.7 890,766 + HGI48_RS04230 0.58 -0.2 890,766 + HGI48_RS04230 0.58 +0.5 890,767 - HGI48_RS04230 0.58 +0.6 890,772 + HGI48_RS04230 0.58 -2.7 890,772 + HGI48_RS04230 0.58 +0.5 890,785 + HGI48_RS04230 0.60 -0.3 890,785 + HGI48_RS04230 0.60 +0.1 890,786 - HGI48_RS04230 0.60 +0.6 890,786 - HGI48_RS04230 0.60 +0.7 890,843 - HGI48_RS04230 0.64 -0.4 890,843 - HGI48_RS04230 0.64 -0.5 890,872 - HGI48_RS04230 0.67 -1.5 890,911 - +0.5 890,912 + -1.1 890,912 + HGI48_RS04230 0.70 +0.9 890,913 - +0.5 891,048 + HGI48_RS04230 0.82 +0.0 891,049 - HGI48_RS04230 0.82 -1.1 891,061 + HGI48_RS04230 0.83 -1.1 891,061 + HGI48_RS04230 0.83 -0.4 891,061 + HGI48_RS04230 0.83 -1.5 891,062 - HGI48_RS04230 0.83 -3.5 891,064 + HGI48_RS04230 0.83 +1.0 891,065 - HGI48_RS04230 0.83 +0.2 891,113 + HGI48_RS04230 0.87 +0.3 891,130 + HGI48_RS04230 0.89 +0.1 891,130 + HGI48_RS04230 0.89 -0.7 891,130 + HGI48_RS04230 0.89 -0.7 891,130 + HGI48_RS04230 0.89 -0.6 891,130 + HGI48_RS04230 0.89 +0.2 891,131 - HGI48_RS04230 0.89 +0.2 891,144 + +0.3 891,144 + -0.5 891,145 - -0.4 891,171 + +0.0 891,214 + +0.3 891,215 - -1.0 891,215 - -2.1 891,656 + +0.8 891,657 - -0.7 891,657 - +0.5 891,657 - -0.7 891,657 - +0.0 891,668 + -0.2 891,685 + -0.8 891,686 - +0.5 891,686 - +1.3 891,729 - +0.0 891,756 + -1.5 891,858 + -0.5 891,859 - -0.8 891,888 + +1.5 891,902 - -1.5 891,911 + -1.1 891,939 - -0.5 892,108 + +1.7 892,108 + +1.0 892,108 + +0.0
Or see this region's nucleotide sequence