Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04185 and HGI48_RS04190 are separated by 85 nucleotides HGI48_RS04190 and HGI48_RS04195 are separated by 67 nucleotides HGI48_RS04195 and HGI48_RS04200 overlap by 4 nucleotides
HGI48_RS04185: HGI48_RS04185 - transposase, at 883,404 to 883,700
_RS04185
HGI48_RS04190: HGI48_RS04190 - transposase, at 883,786 to 884,160
_RS04190
HGI48_RS04195: HGI48_RS04195 - AAA family ATPase, at 884,228 to 885,010
_RS04195
HGI48_RS04200: HGI48_RS04200 - IS21 family transposase, at 885,007 to 886,030
_RS04200
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.262 kb on + strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.263 kb on - strand at 883.271 kb on - strand at 883.335 kb on + strand at 883.335 kb on + strand at 883.336 kb on - strand at 883.336 kb on - strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.337 kb on + strand at 883.338 kb on - strand at 883.345 kb on + strand at 883.385 kb on + strand at 883.406 kb on - strand at 883.406 kb on - strand at 883.419 kb on - strand at 883.419 kb on - strand at 883.419 kb on - strand at 883.496 kb on + strand, within HGI48_RS04185 at 883.497 kb on - strand, within HGI48_RS04185 at 883.497 kb on - strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.498 kb on + strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand, within HGI48_RS04185 at 883.499 kb on - strand at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.503 kb on + strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.504 kb on - strand, within HGI48_RS04185 at 883.605 kb on - strand, within HGI48_RS04185 at 883.710 kb on - strand at 883.895 kb on - strand, within HGI48_RS04190 at 883.966 kb on - strand, within HGI48_RS04190 at 883.966 kb on - strand at 884.022 kb on - strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.025 kb on + strand, within HGI48_RS04190 at 884.026 kb on - strand, within HGI48_RS04190 at 884.133 kb on + strand at 884.133 kb on + strand at 884.137 kb on + strand at 884.137 kb on + strand at 884.190 kb on - strand at 885.808 kb on + strand, within HGI48_RS04200 at 885.811 kb on - strand, within HGI48_RS04200
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 883,262 + -0.5 883,262 + +0.1 883,262 + -1.9 883,262 + -0.7 883,262 + -1.4 883,262 + -0.1 883,262 + +0.2 883,263 - +0.2 883,263 - -0.6 883,263 - -0.4 883,263 - -1.1 883,271 - +0.8 883,335 + -0.2 883,335 + +0.7 883,336 - -1.0 883,336 - -0.1 883,337 + +1.5 883,337 + +1.8 883,337 + -1.4 883,337 + +0.8 883,337 + +0.0 883,338 - -1.5 883,345 + -1.0 883,385 + -1.4 883,406 - +0.5 883,406 - -1.1 883,419 - +0.0 883,419 - +0.5 883,419 - -1.3 883,496 + HGI48_RS04185 0.31 -1.1 883,497 - HGI48_RS04185 0.31 -1.1 883,497 - HGI48_RS04185 0.31 +1.0 883,498 + HGI48_RS04185 0.32 -0.5 883,498 + HGI48_RS04185 0.32 +0.3 883,498 + HGI48_RS04185 0.32 -2.1 883,498 + HGI48_RS04185 0.32 -0.9 883,498 + HGI48_RS04185 0.32 +1.0 883,498 + HGI48_RS04185 0.32 +1.1 883,498 + HGI48_RS04185 0.32 -1.4 883,498 + HGI48_RS04185 0.32 -0.5 883,499 - HGI48_RS04185 0.32 +0.9 883,499 - HGI48_RS04185 0.32 +0.3 883,499 - +1.5 883,499 - HGI48_RS04185 0.32 +0.1 883,499 - HGI48_RS04185 0.32 +0.5 883,499 - +2.8 883,503 + HGI48_RS04185 0.33 +0.5 883,503 + HGI48_RS04185 0.33 +0.0 883,503 + HGI48_RS04185 0.33 -0.8 883,503 + HGI48_RS04185 0.33 -0.9 883,504 - HGI48_RS04185 0.34 +0.2 883,504 - HGI48_RS04185 0.34 -0.7 883,504 - HGI48_RS04185 0.34 -0.3 883,504 - HGI48_RS04185 0.34 +0.7 883,504 - HGI48_RS04185 0.34 -0.1 883,605 - HGI48_RS04185 0.68 -2.1 883,710 - -0.0 883,895 - HGI48_RS04190 0.29 -0.3 883,966 - HGI48_RS04190 0.48 +0.0 883,966 - -0.5 884,022 - HGI48_RS04190 0.63 -1.4 884,025 + HGI48_RS04190 0.64 -0.9 884,025 + +0.5 884,025 + HGI48_RS04190 0.64 -0.1 884,025 + +1.5 884,025 + HGI48_RS04190 0.64 -2.1 884,025 + HGI48_RS04190 0.64 +0.8 884,025 + HGI48_RS04190 0.64 -1.1 884,025 + HGI48_RS04190 0.64 +0.7 884,026 - HGI48_RS04190 0.64 +2.0 884,133 + +0.3 884,133 + +0.1 884,137 + +1.0 884,137 + -0.5 884,190 - -0.9 885,808 + HGI48_RS04200 0.78 +0.7 885,811 - HGI48_RS04200 0.79 +0.1
Or see this region's nucleotide sequence