Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04155 and HGI48_RS04160 are separated by 189 nucleotides HGI48_RS04160 and HGI48_RS04165 are separated by 511 nucleotides HGI48_RS04165 and HGI48_RS04170 overlap by 4 nucleotides
HGI48_RS04155: HGI48_RS04155 - TetR family transcriptional regulator, at 878,878 to 879,441
_RS04155
HGI48_RS04160: HGI48_RS04160 - transposase, at 879,631 to 879,894
_RS04160
HGI48_RS04165: HGI48_RS04165 - lipocalin-like domain-containing protein, at 880,406 to 880,882
_RS04165
HGI48_RS04170: HGI48_RS04170 - cupin domain-containing protein, at 880,879 to 881,415
_RS04170
Position (kb) 879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 878.638 kb on + strand at 878.691 kb on - strand at 878.691 kb on - strand at 878.700 kb on + strand at 878.701 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.739 kb on + strand at 878.739 kb on + strand at 878.825 kb on + strand at 878.825 kb on + strand at 878.852 kb on + strand at 878.906 kb on + strand at 878.941 kb on + strand, within HGI48_RS04155 at 878.957 kb on - strand, within HGI48_RS04155 at 879.115 kb on - strand, within HGI48_RS04155 at 879.151 kb on - strand, within HGI48_RS04155 at 879.163 kb on - strand, within HGI48_RS04155 at 879.173 kb on + strand, within HGI48_RS04155 at 879.174 kb on - strand, within HGI48_RS04155 at 879.213 kb on + strand, within HGI48_RS04155 at 879.384 kb on - strand, within HGI48_RS04155 at 879.412 kb on - strand at 879.412 kb on - strand at 879.415 kb on - strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.746 kb on - strand, within HGI48_RS04160 at 879.746 kb on - strand, within HGI48_RS04160 at 879.858 kb on + strand, within HGI48_RS04160 at 879.931 kb on + strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.958 kb on + strand at 879.958 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.964 kb on - strand at 879.964 kb on - strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.161 kb on + strand at 880.161 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.238 kb on - strand at 880.238 kb on - strand at 880.314 kb on + strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.373 kb on - strand at 880.376 kb on + strand at 880.377 kb on - strand at 880.414 kb on + strand at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.529 kb on - strand at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand at 880.532 kb on + strand, within HGI48_RS04165 at 880.533 kb on - strand at 880.533 kb on - strand, within HGI48_RS04165 at 880.533 kb on - strand, within HGI48_RS04165 at 880.533 kb on - strand, within HGI48_RS04165 at 880.549 kb on + strand, within HGI48_RS04165 at 880.550 kb on - strand, within HGI48_RS04165 at 880.550 kb on - strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.603 kb on - strand, within HGI48_RS04165 at 880.645 kb on + strand at 880.645 kb on + strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.655 kb on + strand, within HGI48_RS04165 at 880.712 kb on + strand, within HGI48_RS04165 at 880.713 kb on - strand, within HGI48_RS04165 at 880.713 kb on - strand, within HGI48_RS04165 at 880.761 kb on + strand at 880.762 kb on - strand, within HGI48_RS04165 at 880.762 kb on - strand, within HGI48_RS04165 at 880.785 kb on + strand, within HGI48_RS04165 at 880.786 kb on - strand at 880.786 kb on - strand, within HGI48_RS04165 at 880.786 kb on - strand, within HGI48_RS04165 at 880.786 kb on - strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.798 kb on + strand, within HGI48_RS04165 at 880.829 kb on + strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 878,638 + +0.5 878,691 - +1.0 878,691 - +0.9 878,700 + -1.0 878,701 - -0.8 878,706 - -0.2 878,706 - -1.3 878,706 - -0.4 878,739 + +0.2 878,739 + -3.0 878,825 + -0.6 878,825 + +0.1 878,852 + -0.4 878,906 + +1.2 878,941 + HGI48_RS04155 0.11 -0.4 878,957 - HGI48_RS04155 0.14 -0.8 879,115 - HGI48_RS04155 0.42 +0.0 879,151 - HGI48_RS04155 0.48 +0.2 879,163 - HGI48_RS04155 0.51 -0.4 879,173 + HGI48_RS04155 0.52 -0.7 879,174 - HGI48_RS04155 0.52 -1.2 879,213 + HGI48_RS04155 0.59 -0.1 879,384 - HGI48_RS04155 0.90 +0.7 879,412 - +0.1 879,412 - +0.5 879,415 - +0.3 879,602 + -0.9 879,603 - +1.7 879,603 - +1.5 879,746 - HGI48_RS04160 0.44 +1.3 879,746 - HGI48_RS04160 0.44 +0.2 879,858 + HGI48_RS04160 0.86 +0.0 879,931 + +1.0 879,931 + -1.1 879,932 - -0.1 879,932 - -2.0 879,932 - +1.5 879,958 + +1.0 879,958 + -2.1 879,963 + -0.3 879,963 + -0.2 879,963 + -0.5 879,963 + -0.9 879,963 + +0.9 879,964 - +0.2 879,964 - +0.3 879,994 + -0.9 879,994 + -0.5 879,994 + -0.5 879,995 - +0.1 879,995 - -0.8 879,995 - -0.1 879,995 - -0.4 879,995 - +0.7 879,995 - +0.0 880,033 + +0.2 880,033 + -0.2 880,033 + -0.7 880,034 - -0.1 880,034 - +0.5 880,034 - +1.5 880,034 - +0.2 880,034 - -0.4 880,159 + +0.6 880,159 + -0.3 880,159 + -0.9 880,159 + +0.0 880,159 + -0.7 880,159 + +0.6 880,160 - +0.3 880,160 - +0.1 880,160 - -0.3 880,161 + +0.1 880,161 + -0.4 880,237 + +0.5 880,237 + +0.8 880,237 + -0.0 880,238 - -1.1 880,238 - -1.2 880,314 + -0.5 880,315 - +1.7 880,315 - -0.2 880,315 - -0.1 880,315 - -0.1 880,315 - -1.5 880,315 - -0.1 880,373 - -2.0 880,376 + +1.5 880,377 - -1.4 880,414 + -0.4 880,528 + HGI48_RS04165 0.26 -1.5 880,528 + HGI48_RS04165 0.26 +0.7 880,528 + HGI48_RS04165 0.26 -0.8 880,528 + HGI48_RS04165 0.26 -0.0 880,529 - +2.8 880,529 - HGI48_RS04165 0.26 +0.2 880,529 - HGI48_RS04165 0.26 -0.1 880,529 - HGI48_RS04165 0.26 +0.2 880,529 - +0.5 880,532 + HGI48_RS04165 0.26 +1.0 880,533 - +0.5 880,533 - HGI48_RS04165 0.27 -0.1 880,533 - HGI48_RS04165 0.27 +0.1 880,533 - HGI48_RS04165 0.27 -2.2 880,549 + HGI48_RS04165 0.30 -0.4 880,550 - HGI48_RS04165 0.30 -0.1 880,550 - HGI48_RS04165 0.30 -0.3 880,602 + HGI48_RS04165 0.41 +0.2 880,602 + HGI48_RS04165 0.41 -2.1 880,602 + HGI48_RS04165 0.41 +0.5 880,602 + HGI48_RS04165 0.41 -2.7 880,603 - HGI48_RS04165 0.41 -0.1 880,645 + +0.5 880,645 + HGI48_RS04165 0.50 +0.3 880,646 - HGI48_RS04165 0.50 -0.9 880,646 - HGI48_RS04165 0.50 -0.3 880,646 - HGI48_RS04165 0.50 +0.0 880,655 + HGI48_RS04165 0.52 +0.2 880,712 + HGI48_RS04165 0.64 +0.0 880,713 - HGI48_RS04165 0.64 +0.0 880,713 - HGI48_RS04165 0.64 +2.3 880,761 + -1.1 880,762 - HGI48_RS04165 0.75 +0.5 880,762 - HGI48_RS04165 0.75 +0.3 880,785 + HGI48_RS04165 0.79 +0.6 880,786 - +0.9 880,786 - HGI48_RS04165 0.80 -0.1 880,786 - HGI48_RS04165 0.80 +1.2 880,786 - HGI48_RS04165 0.80 -0.3 880,789 + HGI48_RS04165 0.80 -1.9 880,789 + HGI48_RS04165 0.80 -0.1 880,789 + HGI48_RS04165 0.80 -0.9 880,789 + HGI48_RS04165 0.80 -0.3 880,789 + HGI48_RS04165 0.80 -0.3 880,789 + HGI48_RS04165 0.80 -0.5 880,790 - HGI48_RS04165 0.81 -0.5 880,790 - HGI48_RS04165 0.81 -0.4 880,790 - HGI48_RS04165 0.81 +0.3 880,790 - HGI48_RS04165 0.81 -1.9 880,790 - HGI48_RS04165 0.81 -1.9 880,790 - HGI48_RS04165 0.81 +0.2 880,790 - HGI48_RS04165 0.81 -0.8 880,790 - HGI48_RS04165 0.81 -0.2 880,798 + HGI48_RS04165 0.82 +0.0 880,829 + HGI48_RS04165 0.89 -1.1 880,830 - HGI48_RS04165 0.89 +1.0 880,830 - HGI48_RS04165 0.89 -1.1 880,830 - HGI48_RS04165 0.89 +0.3
Or see this region's nucleotide sequence