Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04140 and HGI48_RS04145 are separated by 66 nucleotides HGI48_RS04145 and HGI48_RS04150 are separated by 188 nucleotides
HGI48_RS04140: HGI48_RS04140 - IS3 family transposase, at 875,660 to 876,811
_RS04140
HGI48_RS04145: HGI48_RS04145 - carboxymuconolactone decarboxylase family protein, at 876,878 to 877,060
_RS04145
HGI48_RS04150: HGI48_RS04150 - alkene reductase, at 877,249 to 878,361
_RS04150
Position (kb) 876
877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 877.000 kb on + strand, within HGI48_RS04145 at 877.074 kb on + strand at 877.116 kb on + strand at 877.144 kb on - strand at 877.375 kb on + strand, within HGI48_RS04150 at 877.375 kb on + strand, within HGI48_RS04150 at 877.376 kb on - strand at 877.376 kb on - strand, within HGI48_RS04150 at 877.409 kb on - strand at 877.549 kb on - strand, within HGI48_RS04150 at 877.600 kb on - strand, within HGI48_RS04150 at 877.602 kb on - strand at 877.638 kb on + strand, within HGI48_RS04150 at 877.639 kb on - strand, within HGI48_RS04150 at 877.639 kb on - strand, within HGI48_RS04150 at 877.754 kb on + strand at 877.755 kb on - strand, within HGI48_RS04150 at 877.755 kb on - strand at 877.757 kb on - strand, within HGI48_RS04150 at 877.757 kb on - strand at 877.758 kb on + strand, within HGI48_RS04150 at 877.758 kb on + strand, within HGI48_RS04150 at 877.759 kb on - strand, within HGI48_RS04150 at 877.767 kb on + strand, within HGI48_RS04150 at 877.767 kb on + strand, within HGI48_RS04150 at 877.768 kb on - strand at 877.773 kb on + strand, within HGI48_RS04150 at 877.805 kb on + strand, within HGI48_RS04150 at 877.945 kb on + strand, within HGI48_RS04150 at 877.946 kb on - strand, within HGI48_RS04150 at 877.997 kb on - strand, within HGI48_RS04150 at 878.004 kb on + strand at 878.004 kb on + strand, within HGI48_RS04150 at 878.004 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand, within HGI48_RS04150 at 878.037 kb on + strand at 878.037 kb on + strand, within HGI48_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 877,000 + HGI48_RS04145 0.67 -1.0 877,074 + -0.9 877,116 + -1.3 877,144 - -1.1 877,375 + HGI48_RS04150 0.11 -0.7 877,375 + HGI48_RS04150 0.11 -0.4 877,376 - +1.2 877,376 - HGI48_RS04150 0.11 +0.2 877,409 - +2.5 877,549 - HGI48_RS04150 0.27 -0.8 877,600 - HGI48_RS04150 0.32 -0.1 877,602 - -1.1 877,638 + HGI48_RS04150 0.35 -0.3 877,639 - HGI48_RS04150 0.35 -0.2 877,639 - HGI48_RS04150 0.35 +0.6 877,754 + -0.5 877,755 - HGI48_RS04150 0.45 -1.4 877,755 - +1.5 877,757 - HGI48_RS04150 0.46 -0.1 877,757 - -1.1 877,758 + HGI48_RS04150 0.46 -2.1 877,758 + HGI48_RS04150 0.46 -0.9 877,759 - HGI48_RS04150 0.46 +0.1 877,767 + HGI48_RS04150 0.47 +0.8 877,767 + HGI48_RS04150 0.47 -2.0 877,768 - +1.2 877,773 + HGI48_RS04150 0.47 -0.3 877,805 + HGI48_RS04150 0.50 -0.3 877,945 + HGI48_RS04150 0.63 +1.5 877,946 - HGI48_RS04150 0.63 -0.8 877,997 - HGI48_RS04150 0.67 -0.0 878,004 + +0.9 878,004 + HGI48_RS04150 0.68 -2.7 878,004 + HGI48_RS04150 0.68 +0.7 878,037 + HGI48_RS04150 0.71 -0.5 878,037 + HGI48_RS04150 0.71 +1.0 878,037 + +1.5 878,037 + HGI48_RS04150 0.71 -1.0
Or see this region's nucleotide sequence