Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03600 and HGI48_RS03605 are separated by 88 nucleotides HGI48_RS03605 and HGI48_RS03610 overlap by 4 nucleotides HGI48_RS03610 and HGI48_RS03615 overlap by 8 nucleotides
HGI48_RS03600: HGI48_RS03600 - ABC transporter substrate-binding protein, at 762,136 to 763,746
_RS03600
HGI48_RS03605: HGI48_RS03605 - ABC transporter permease, at 763,835 to 764,893
_RS03605
HGI48_RS03610: HGI48_RS03610 - ABC transporter permease, at 764,890 to 765,795
_RS03610
HGI48_RS03615: HGI48_RS03615 - ABC transporter ATP-binding protein, at 765,788 to 766,663
_RS03615
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 762.842 kb on + strand, within HGI48_RS03600 at 762.843 kb on - strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.865 kb on - strand, within HGI48_RS03600 at 762.865 kb on - strand, within HGI48_RS03600 at 762.964 kb on - strand, within HGI48_RS03600 at 762.964 kb on - strand, within HGI48_RS03600 at 763.003 kb on + strand, within HGI48_RS03600 at 763.003 kb on + strand, within HGI48_RS03600 at 763.004 kb on - strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.007 kb on - strand, within HGI48_RS03600 at 763.007 kb on - strand, within HGI48_RS03600 at 763.033 kb on + strand, within HGI48_RS03600 at 763.069 kb on + strand, within HGI48_RS03600 at 763.114 kb on + strand, within HGI48_RS03600 at 763.123 kb on + strand, within HGI48_RS03600 at 763.123 kb on + strand, within HGI48_RS03600 at 763.124 kb on - strand, within HGI48_RS03600 at 763.124 kb on - strand, within HGI48_RS03600 at 763.178 kb on - strand, within HGI48_RS03600 at 763.288 kb on - strand, within HGI48_RS03600 at 763.361 kb on - strand, within HGI48_RS03600 at 763.456 kb on + strand, within HGI48_RS03600 at 763.457 kb on - strand, within HGI48_RS03600 at 763.457 kb on - strand, within HGI48_RS03600 at 763.457 kb on - strand, within HGI48_RS03600 at 763.524 kb on + strand, within HGI48_RS03600 at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.591 kb on + strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.592 kb on - strand at 763.593 kb on + strand at 763.593 kb on + strand at 763.594 kb on - strand at 763.594 kb on - strand at 763.613 kb on - strand at 763.690 kb on + strand at 763.690 kb on + strand at 763.690 kb on + strand at 763.690 kb on + strand at 763.690 kb on + strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.691 kb on - strand at 763.732 kb on + strand at 763.732 kb on + strand at 763.732 kb on + strand at 763.744 kb on + strand at 763.744 kb on + strand at 763.745 kb on - strand at 763.745 kb on - strand at 763.745 kb on - strand at 763.957 kb on + strand, within HGI48_RS03605 at 763.958 kb on - strand, within HGI48_RS03605 at 763.958 kb on - strand, within HGI48_RS03605 at 763.979 kb on - strand, within HGI48_RS03605 at 764.027 kb on + strand, within HGI48_RS03605 at 764.027 kb on + strand, within HGI48_RS03605 at 764.027 kb on + strand, within HGI48_RS03605 at 764.027 kb on + strand, within HGI48_RS03605 at 764.027 kb on + strand, within HGI48_RS03605 at 764.028 kb on - strand, within HGI48_RS03605 at 764.028 kb on - strand, within HGI48_RS03605 at 764.028 kb on - strand, within HGI48_RS03605 at 764.028 kb on - strand, within HGI48_RS03605 at 764.028 kb on - strand, within HGI48_RS03605 at 764.069 kb on + strand, within HGI48_RS03605 at 764.069 kb on + strand, within HGI48_RS03605 at 764.069 kb on + strand, within HGI48_RS03605 at 764.069 kb on + strand, within HGI48_RS03605 at 764.069 kb on + strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.070 kb on - strand, within HGI48_RS03605 at 764.088 kb on - strand, within HGI48_RS03605 at 764.155 kb on + strand at 764.155 kb on + strand, within HGI48_RS03605 at 764.156 kb on - strand, within HGI48_RS03605 at 764.158 kb on + strand, within HGI48_RS03605 at 764.159 kb on - strand, within HGI48_RS03605 at 764.274 kb on - strand, within HGI48_RS03605 at 764.274 kb on - strand, within HGI48_RS03605 at 764.274 kb on - strand, within HGI48_RS03605 at 764.274 kb on - strand, within HGI48_RS03605 at 764.288 kb on - strand, within HGI48_RS03605 at 764.351 kb on + strand, within HGI48_RS03605 at 764.351 kb on + strand at 764.351 kb on + strand, within HGI48_RS03605 at 764.351 kb on + strand, within HGI48_RS03605 at 764.351 kb on + strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand at 764.352 kb on - strand, within HGI48_RS03605 at 764.352 kb on - strand, within HGI48_RS03605 at 764.469 kb on + strand, within HGI48_RS03605 at 764.469 kb on + strand, within HGI48_RS03605 at 764.470 kb on - strand, within HGI48_RS03605 at 764.470 kb on - strand, within HGI48_RS03605 at 764.470 kb on - strand, within HGI48_RS03605 at 764.470 kb on - strand, within HGI48_RS03605 at 764.534 kb on + strand, within HGI48_RS03605 at 764.534 kb on + strand, within HGI48_RS03605 at 764.534 kb on + strand, within HGI48_RS03605 at 764.534 kb on + strand, within HGI48_RS03605 at 764.535 kb on - strand, within HGI48_RS03605 at 764.535 kb on - strand, within HGI48_RS03605 at 764.535 kb on - strand, within HGI48_RS03605 at 764.535 kb on - strand, within HGI48_RS03605 at 764.546 kb on - strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.585 kb on + strand, within HGI48_RS03605 at 764.586 kb on - strand, within HGI48_RS03605 at 764.586 kb on - strand, within HGI48_RS03605 at 764.716 kb on - strand, within HGI48_RS03605 at 764.718 kb on + strand, within HGI48_RS03605 at 764.718 kb on + strand at 764.718 kb on + strand, within HGI48_RS03605 at 764.719 kb on - strand, within HGI48_RS03605 at 764.719 kb on - strand, within HGI48_RS03605 at 764.719 kb on - strand at 764.719 kb on - strand, within HGI48_RS03605 at 764.756 kb on + strand, within HGI48_RS03605 at 764.757 kb on - strand, within HGI48_RS03605 at 764.757 kb on - strand, within HGI48_RS03605 at 764.757 kb on - strand, within HGI48_RS03605 at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.861 kb on + strand at 764.889 kb on + strand at 764.931 kb on + strand at 764.932 kb on - strand at 765.181 kb on + strand, within HGI48_RS03610 at 765.182 kb on - strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.202 kb on + strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.203 kb on - strand, within HGI48_RS03610 at 765.205 kb on - strand at 765.271 kb on + strand, within HGI48_RS03610 at 765.488 kb on + strand, within HGI48_RS03610 at 765.489 kb on - strand, within HGI48_RS03610 at 765.489 kb on - strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.676 kb on + strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.677 kb on - strand, within HGI48_RS03610 at 765.764 kb on + strand at 765.764 kb on + strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.817 kb on + strand at 765.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 762,842 + HGI48_RS03600 0.44 -0.8 762,843 - HGI48_RS03600 0.44 +0.0 762,864 + HGI48_RS03600 0.45 -0.4 762,864 + HGI48_RS03600 0.45 -0.5 762,864 + HGI48_RS03600 0.45 -0.8 762,865 - HGI48_RS03600 0.45 -0.0 762,865 - HGI48_RS03600 0.45 -0.8 762,964 - HGI48_RS03600 0.51 +0.0 762,964 - HGI48_RS03600 0.51 -1.8 763,003 + HGI48_RS03600 0.54 -1.7 763,003 + HGI48_RS03600 0.54 -0.5 763,004 - HGI48_RS03600 0.54 -1.1 763,006 + HGI48_RS03600 0.54 -0.9 763,006 + HGI48_RS03600 0.54 +0.3 763,006 + HGI48_RS03600 0.54 -0.8 763,006 + HGI48_RS03600 0.54 +0.3 763,006 + HGI48_RS03600 0.54 -0.8 763,006 + HGI48_RS03600 0.54 -0.1 763,006 + HGI48_RS03600 0.54 -2.1 763,007 - HGI48_RS03600 0.54 +0.0 763,007 - HGI48_RS03600 0.54 -0.5 763,033 + HGI48_RS03600 0.56 -2.1 763,069 + HGI48_RS03600 0.58 +0.2 763,114 + HGI48_RS03600 0.61 -0.4 763,123 + HGI48_RS03600 0.61 -0.2 763,123 + HGI48_RS03600 0.61 +0.0 763,124 - HGI48_RS03600 0.61 -2.8 763,124 - HGI48_RS03600 0.61 -0.2 763,178 - HGI48_RS03600 0.65 -0.0 763,288 - HGI48_RS03600 0.72 -0.5 763,361 - HGI48_RS03600 0.76 -0.1 763,456 + HGI48_RS03600 0.82 -0.9 763,457 - HGI48_RS03600 0.82 -0.5 763,457 - HGI48_RS03600 0.82 -0.4 763,457 - HGI48_RS03600 0.82 +0.8 763,524 + HGI48_RS03600 0.86 +0.5 763,591 + -0.4 763,591 + -3.1 763,591 + -0.7 763,591 + -0.5 763,591 + +0.8 763,591 + +1.0 763,591 + -0.9 763,591 + -0.6 763,591 + -0.3 763,591 + -0.7 763,591 + +0.6 763,591 + +0.5 763,591 + +0.3 763,591 + -1.4 763,592 - +0.5 763,592 - -0.2 763,592 - +0.5 763,592 - +0.9 763,592 - +1.2 763,592 - +0.5 763,592 - +0.3 763,592 - -0.4 763,592 - -0.5 763,592 - -0.3 763,592 - -0.7 763,592 - -0.8 763,592 - +1.2 763,592 - -0.5 763,593 + -0.2 763,593 + +0.1 763,594 - -0.3 763,594 - -1.5 763,613 - -0.1 763,690 + -1.0 763,690 + -1.1 763,690 + +1.8 763,690 + -0.7 763,690 + -0.7 763,691 - -0.5 763,691 - -0.5 763,691 - +0.3 763,691 - -0.0 763,691 - -1.8 763,691 - +0.3 763,691 - +1.1 763,691 - +1.4 763,691 - -1.3 763,691 - -1.1 763,732 + +0.2 763,732 + -0.5 763,732 + -0.9 763,744 + +0.2 763,744 + +1.0 763,745 - +0.3 763,745 - -0.5 763,745 - +1.1 763,957 + HGI48_RS03605 0.12 -0.6 763,958 - HGI48_RS03605 0.12 -0.4 763,958 - HGI48_RS03605 0.12 -0.5 763,979 - HGI48_RS03605 0.14 -0.1 764,027 + HGI48_RS03605 0.18 -0.5 764,027 + HGI48_RS03605 0.18 +0.5 764,027 + HGI48_RS03605 0.18 +0.3 764,027 + HGI48_RS03605 0.18 -1.7 764,027 + HGI48_RS03605 0.18 -0.5 764,028 - HGI48_RS03605 0.18 -0.1 764,028 - HGI48_RS03605 0.18 -2.3 764,028 - HGI48_RS03605 0.18 +0.5 764,028 - HGI48_RS03605 0.18 -1.2 764,028 - HGI48_RS03605 0.18 -0.5 764,069 + HGI48_RS03605 0.22 +0.1 764,069 + HGI48_RS03605 0.22 -0.6 764,069 + HGI48_RS03605 0.22 +0.1 764,069 + HGI48_RS03605 0.22 -1.3 764,069 + HGI48_RS03605 0.22 +0.2 764,070 - HGI48_RS03605 0.22 +1.0 764,070 - HGI48_RS03605 0.22 -1.3 764,070 - HGI48_RS03605 0.22 +1.5 764,070 - HGI48_RS03605 0.22 -1.1 764,070 - HGI48_RS03605 0.22 -0.7 764,070 - HGI48_RS03605 0.22 +0.4 764,088 - HGI48_RS03605 0.24 +0.1 764,155 + +0.5 764,155 + HGI48_RS03605 0.30 -0.5 764,156 - HGI48_RS03605 0.30 +0.2 764,158 + HGI48_RS03605 0.31 -0.0 764,159 - HGI48_RS03605 0.31 -0.8 764,274 - HGI48_RS03605 0.41 +0.9 764,274 - HGI48_RS03605 0.41 +1.1 764,274 - HGI48_RS03605 0.41 +0.9 764,274 - HGI48_RS03605 0.41 -0.2 764,288 - HGI48_RS03605 0.43 -0.8 764,351 + HGI48_RS03605 0.49 -0.1 764,351 + -1.1 764,351 + HGI48_RS03605 0.49 -1.0 764,351 + HGI48_RS03605 0.49 -1.1 764,351 + HGI48_RS03605 0.49 -0.7 764,352 - HGI48_RS03605 0.49 -0.3 764,352 - HGI48_RS03605 0.49 -0.5 764,352 - HGI48_RS03605 0.49 +0.0 764,352 - HGI48_RS03605 0.49 -0.5 764,352 - HGI48_RS03605 0.49 -1.5 764,352 - HGI48_RS03605 0.49 -1.5 764,352 - HGI48_RS03605 0.49 -0.8 764,352 - +0.5 764,352 - HGI48_RS03605 0.49 -1.2 764,352 - HGI48_RS03605 0.49 +0.6 764,469 + HGI48_RS03605 0.60 -0.2 764,469 + HGI48_RS03605 0.60 -1.3 764,470 - HGI48_RS03605 0.60 -1.8 764,470 - HGI48_RS03605 0.60 +0.9 764,470 - HGI48_RS03605 0.60 -0.0 764,470 - HGI48_RS03605 0.60 +0.2 764,534 + HGI48_RS03605 0.66 -1.3 764,534 + HGI48_RS03605 0.66 -1.0 764,534 + HGI48_RS03605 0.66 +0.7 764,534 + HGI48_RS03605 0.66 -0.8 764,535 - HGI48_RS03605 0.66 +0.7 764,535 - HGI48_RS03605 0.66 +1.0 764,535 - HGI48_RS03605 0.66 -1.0 764,535 - HGI48_RS03605 0.66 -1.5 764,546 - HGI48_RS03605 0.67 -0.9 764,585 + HGI48_RS03605 0.71 +0.9 764,585 + HGI48_RS03605 0.71 -1.8 764,585 + HGI48_RS03605 0.71 +0.2 764,585 + +0.9 764,585 + HGI48_RS03605 0.71 -0.8 764,585 + HGI48_RS03605 0.71 -1.8 764,585 + HGI48_RS03605 0.71 +1.1 764,585 + HGI48_RS03605 0.71 -0.5 764,585 + HGI48_RS03605 0.71 +0.2 764,585 + HGI48_RS03605 0.71 +0.8 764,585 + HGI48_RS03605 0.71 +0.3 764,586 - HGI48_RS03605 0.71 -2.3 764,586 - HGI48_RS03605 0.71 -0.6 764,716 - HGI48_RS03605 0.83 +0.3 764,718 + HGI48_RS03605 0.83 +0.3 764,718 + +0.9 764,718 + HGI48_RS03605 0.83 -0.0 764,719 - HGI48_RS03605 0.83 -1.0 764,719 - HGI48_RS03605 0.83 -0.3 764,719 - -1.1 764,719 - HGI48_RS03605 0.83 -0.7 764,756 + HGI48_RS03605 0.87 -0.1 764,757 - HGI48_RS03605 0.87 -0.1 764,757 - HGI48_RS03605 0.87 -0.5 764,757 - HGI48_RS03605 0.87 -1.7 764,861 + -0.5 764,861 + +0.2 764,861 + -0.5 764,861 + -0.4 764,861 + +0.2 764,861 + -0.5 764,889 + -0.2 764,931 + -0.1 764,932 - -0.0 765,181 + HGI48_RS03610 0.32 -0.3 765,182 - HGI48_RS03610 0.32 +0.3 765,202 + HGI48_RS03610 0.34 +0.5 765,202 + HGI48_RS03610 0.34 +0.3 765,202 + HGI48_RS03610 0.34 +0.1 765,202 + HGI48_RS03610 0.34 +0.1 765,202 + HGI48_RS03610 0.34 -1.1 765,202 + HGI48_RS03610 0.34 -0.1 765,202 + HGI48_RS03610 0.34 -2.3 765,202 + HGI48_RS03610 0.34 -1.8 765,202 + HGI48_RS03610 0.34 +0.8 765,203 - HGI48_RS03610 0.35 +0.5 765,203 - HGI48_RS03610 0.35 +0.4 765,203 - HGI48_RS03610 0.35 +0.3 765,203 - HGI48_RS03610 0.35 +0.2 765,203 - HGI48_RS03610 0.35 -0.2 765,203 - HGI48_RS03610 0.35 -2.7 765,205 - -0.5 765,271 + HGI48_RS03610 0.42 +0.4 765,488 + HGI48_RS03610 0.66 +0.6 765,489 - HGI48_RS03610 0.66 -1.1 765,489 - HGI48_RS03610 0.66 -0.0 765,676 + HGI48_RS03610 0.87 -1.3 765,676 + HGI48_RS03610 0.87 +0.5 765,676 + HGI48_RS03610 0.87 -0.6 765,676 + HGI48_RS03610 0.87 -0.2 765,676 + HGI48_RS03610 0.87 -0.3 765,676 + HGI48_RS03610 0.87 +0.4 765,677 - HGI48_RS03610 0.87 -0.5 765,677 - HGI48_RS03610 0.87 +1.0 765,677 - HGI48_RS03610 0.87 -0.2 765,677 - HGI48_RS03610 0.87 -0.2 765,764 + +0.2 765,764 + -1.1 765,765 - +0.5 765,765 - -0.6 765,765 - +0.1 765,765 - -0.4 765,793 + +0.2 765,793 + +0.7 765,793 + -0.6 765,794 - +2.1 765,794 - +0.9 765,794 - +0.0 765,801 + -0.1 765,801 + -0.4 765,801 + +0.9 765,801 + +0.2 765,801 + +1.1 765,801 + -1.2 765,801 + +1.5 765,801 + +1.0 765,802 - +0.5 765,802 - +0.5 765,802 - +0.1 765,802 - -0.7 765,802 - +0.5 765,802 - -0.4 765,802 - -0.1 765,817 + -1.4 765,817 + +0.5
Or see this region's nucleotide sequence