Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03480 and HGI48_RS03485 overlap by 8 nucleotides HGI48_RS03485 and HGI48_RS03490 are separated by 189 nucleotides HGI48_RS03490 and HGI48_RS03495 are separated by 28 nucleotides HGI48_RS03495 and HGI48_RS03500 are separated by 113 nucleotides
HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906
_RS03480
HGI48_RS03485: HGI48_RS03485 - heavy metal response regulator transcription factor, at 731,899 to 732,579
_RS03485
HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154
_RS03490
HGI48_RS03495: HGI48_RS03495 - cation efflux system protein CusF, at 734,183 to 734,536
_RS03495
HGI48_RS03500: HGI48_RS03500 - efflux RND transporter periplasmic adaptor subunit, at 734,650 to 735,930
_RS03500
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.804 kb on + strand at 731.805 kb on - strand at 731.805 kb on - strand at 731.822 kb on + strand at 731.823 kb on - strand at 731.832 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.920 kb on + strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.921 kb on - strand at 731.963 kb on + strand at 731.974 kb on + strand at 731.974 kb on + strand, within HGI48_RS03485 at 731.974 kb on + strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 731.975 kb on - strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.055 kb on + strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.056 kb on - strand, within HGI48_RS03485 at 732.195 kb on + strand, within HGI48_RS03485 at 732.196 kb on - strand, within HGI48_RS03485 at 732.211 kb on + strand, within HGI48_RS03485 at 732.287 kb on + strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.288 kb on - strand, within HGI48_RS03485 at 732.333 kb on + strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.350 kb on - strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.352 kb on + strand, within HGI48_RS03485 at 732.353 kb on - strand, within HGI48_RS03485 at 732.378 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.391 kb on + strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.392 kb on - strand, within HGI48_RS03485 at 732.393 kb on + strand, within HGI48_RS03485 at 732.393 kb on + strand at 732.393 kb on + strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.394 kb on - strand, within HGI48_RS03485 at 732.396 kb on + strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.397 kb on - strand, within HGI48_RS03485 at 732.446 kb on + strand at 732.447 kb on - strand at 732.536 kb on + strand at 732.537 kb on - strand at 732.571 kb on + strand at 732.583 kb on - strand at 732.583 kb on - strand at 732.611 kb on + strand at 732.611 kb on + strand at 732.612 kb on - strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.620 kb on + strand at 732.621 kb on - strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.640 kb on + strand at 732.705 kb on - strand at 732.728 kb on + strand at 732.729 kb on - strand at 732.742 kb on - strand at 732.742 kb on - strand at 732.779 kb on + strand at 732.780 kb on - strand at 732.785 kb on + strand at 732.785 kb on + strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.786 kb on - strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.789 kb on + strand at 732.790 kb on - strand at 732.790 kb on - strand at 732.842 kb on - strand at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.912 kb on + strand, within HGI48_RS03490 at 732.913 kb on - strand at 732.913 kb on - strand, within HGI48_RS03490 at 732.916 kb on + strand, within HGI48_RS03490 at 732.917 kb on - strand, within HGI48_RS03490 at 732.987 kb on + strand, within HGI48_RS03490 at 732.988 kb on - strand, within HGI48_RS03490 at 732.991 kb on - strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.050 kb on + strand, within HGI48_RS03490 at 733.092 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.099 kb on + strand, within HGI48_RS03490 at 733.100 kb on - strand at 733.141 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.165 kb on + strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.166 kb on - strand, within HGI48_RS03490 at 733.197 kb on + strand, within HGI48_RS03490 at 733.198 kb on - strand, within HGI48_RS03490 at 733.222 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.288 kb on + strand, within HGI48_RS03490 at 733.360 kb on + strand, within HGI48_RS03490 at 733.361 kb on - strand, within HGI48_RS03490 at 733.396 kb on - strand at 733.433 kb on + strand, within HGI48_RS03490 at 733.433 kb on + strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.434 kb on - strand, within HGI48_RS03490 at 733.440 kb on + strand, within HGI48_RS03490 at 733.455 kb on - strand, within HGI48_RS03490 at 733.488 kb on + strand at 733.489 kb on - strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.516 kb on + strand, within HGI48_RS03490 at 733.641 kb on + strand, within HGI48_RS03490 at 733.642 kb on - strand, within HGI48_RS03490 at 733.726 kb on - strand, within HGI48_RS03490 at 733.773 kb on + strand, within HGI48_RS03490 at 733.815 kb on + strand, within HGI48_RS03490 at 733.863 kb on + strand at 733.974 kb on - strand, within HGI48_RS03490 at 733.979 kb on + strand, within HGI48_RS03490 at 733.979 kb on + strand, within HGI48_RS03490 at 733.980 kb on - strand, within HGI48_RS03490 at 734.003 kb on + strand, within HGI48_RS03490 at 734.004 kb on - strand, within HGI48_RS03490 at 734.088 kb on + strand at 734.089 kb on - strand at 734.092 kb on + strand at 734.156 kb on + strand at 734.156 kb on + strand at 734.159 kb on - strand at 734.247 kb on - strand, within HGI48_RS03495 at 734.444 kb on - strand, within HGI48_RS03495 at 734.497 kb on + strand, within HGI48_RS03495 at 734.681 kb on + strand at 734.857 kb on - strand, within HGI48_RS03500 at 734.916 kb on + strand, within HGI48_RS03500 at 734.923 kb on - strand, within HGI48_RS03500 at 734.923 kb on - strand, within HGI48_RS03500 at 735.015 kb on + strand, within HGI48_RS03500 at 735.016 kb on - strand, within HGI48_RS03500 at 735.019 kb on + strand, within HGI48_RS03500 at 735.020 kb on - strand, within HGI48_RS03500 at 735.020 kb on - strand, within HGI48_RS03500 at 735.022 kb on - strand, within HGI48_RS03500 at 735.114 kb on + strand, within HGI48_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 731,804 + +0.3 731,805 - -0.5 731,805 - -0.3 731,822 + +0.3 731,823 - -0.5 731,832 + -0.3 731,920 + -0.2 731,920 + +0.2 731,920 + +1.2 731,920 + -1.3 731,920 + -0.4 731,920 + +0.8 731,920 + +1.1 731,921 - +0.0 731,921 - -0.3 731,921 - -0.2 731,963 + -0.4 731,974 + +0.5 731,974 + HGI48_RS03485 0.11 -0.8 731,974 + HGI48_RS03485 0.11 -0.5 731,975 - HGI48_RS03485 0.11 +1.0 731,975 - HGI48_RS03485 0.11 +0.1 731,975 - HGI48_RS03485 0.11 -0.5 732,055 + HGI48_RS03485 0.23 +0.0 732,055 + HGI48_RS03485 0.23 -2.3 732,056 - HGI48_RS03485 0.23 -1.8 732,056 - HGI48_RS03485 0.23 -0.5 732,195 + HGI48_RS03485 0.43 -0.3 732,196 - HGI48_RS03485 0.44 -0.6 732,211 + HGI48_RS03485 0.46 +0.3 732,287 + HGI48_RS03485 0.57 -1.0 732,288 - HGI48_RS03485 0.57 -0.0 732,288 - HGI48_RS03485 0.57 +0.2 732,333 + HGI48_RS03485 0.64 -1.5 732,350 - HGI48_RS03485 0.66 -0.3 732,350 - HGI48_RS03485 0.66 -1.7 732,350 - HGI48_RS03485 0.66 -0.2 732,352 + HGI48_RS03485 0.67 -0.7 732,352 + HGI48_RS03485 0.67 +0.0 732,353 - HGI48_RS03485 0.67 +0.0 732,378 + HGI48_RS03485 0.70 -0.2 732,391 + HGI48_RS03485 0.72 +1.4 732,391 + HGI48_RS03485 0.72 +1.1 732,391 + HGI48_RS03485 0.72 -1.5 732,392 - HGI48_RS03485 0.72 +0.2 732,392 - HGI48_RS03485 0.72 -0.8 732,392 - HGI48_RS03485 0.72 -0.5 732,393 + HGI48_RS03485 0.73 +0.3 732,393 + -1.1 732,393 + HGI48_RS03485 0.73 -0.6 732,394 - HGI48_RS03485 0.73 -0.2 732,394 - HGI48_RS03485 0.73 +0.7 732,394 - HGI48_RS03485 0.73 -0.9 732,394 - HGI48_RS03485 0.73 -0.7 732,396 + HGI48_RS03485 0.73 -0.0 732,397 - HGI48_RS03485 0.73 -1.7 732,397 - HGI48_RS03485 0.73 +0.1 732,446 + -1.1 732,447 - -1.1 732,536 + +0.5 732,537 - +1.2 732,571 + +0.9 732,583 - +0.9 732,583 - -1.5 732,611 + -1.1 732,611 + +0.9 732,612 - -0.3 732,620 + -0.2 732,620 + -0.8 732,620 + -0.3 732,621 - -0.7 732,640 + -0.1 732,640 + -0.4 732,640 + -1.1 732,705 - +0.1 732,728 + -1.3 732,729 - -0.5 732,742 - -0.3 732,742 - +0.7 732,779 + -0.8 732,780 - -0.5 732,785 + -0.1 732,785 + -0.2 732,786 - -1.4 732,786 - -0.1 732,786 - -0.5 732,789 + -0.7 732,789 + -0.2 732,789 + -0.9 732,789 + -1.7 732,790 - -0.1 732,790 - +0.9 732,842 - +0.2 732,912 + HGI48_RS03490 0.10 +0.7 732,912 + HGI48_RS03490 0.10 -0.5 732,912 + HGI48_RS03490 0.10 +0.2 732,912 + HGI48_RS03490 0.10 -1.1 732,912 + HGI48_RS03490 0.10 -0.7 732,912 + HGI48_RS03490 0.10 -0.8 732,913 - -1.1 732,913 - HGI48_RS03490 0.10 +0.8 732,916 + HGI48_RS03490 0.11 -1.1 732,917 - HGI48_RS03490 0.11 -1.8 732,987 + HGI48_RS03490 0.16 +0.5 732,988 - HGI48_RS03490 0.16 -1.2 732,991 - HGI48_RS03490 0.16 -0.5 733,050 + HGI48_RS03490 0.20 -0.8 733,050 + HGI48_RS03490 0.20 -0.5 733,092 + HGI48_RS03490 0.23 -1.8 733,099 + HGI48_RS03490 0.24 -0.8 733,099 + HGI48_RS03490 0.24 +0.5 733,100 - +2.5 733,141 + HGI48_RS03490 0.27 -1.2 733,165 + HGI48_RS03490 0.29 +0.1 733,165 + HGI48_RS03490 0.29 -0.6 733,166 - HGI48_RS03490 0.29 -0.5 733,166 - HGI48_RS03490 0.29 +0.1 733,197 + HGI48_RS03490 0.31 -0.6 733,198 - HGI48_RS03490 0.31 -0.8 733,222 + HGI48_RS03490 0.33 -0.7 733,288 + HGI48_RS03490 0.37 +1.7 733,288 + HGI48_RS03490 0.37 -0.7 733,360 + HGI48_RS03490 0.43 -1.1 733,361 - HGI48_RS03490 0.43 -1.1 733,396 - -1.1 733,433 + HGI48_RS03490 0.48 -1.4 733,433 + HGI48_RS03490 0.48 -0.3 733,434 - HGI48_RS03490 0.48 -1.5 733,434 - HGI48_RS03490 0.48 +0.4 733,434 - HGI48_RS03490 0.48 -0.5 733,440 + HGI48_RS03490 0.48 +1.1 733,455 - HGI48_RS03490 0.49 -0.3 733,488 + -0.1 733,489 - HGI48_RS03490 0.52 -0.0 733,516 + HGI48_RS03490 0.54 -2.0 733,516 + HGI48_RS03490 0.54 +0.5 733,516 + HGI48_RS03490 0.54 -0.3 733,516 + HGI48_RS03490 0.54 -0.2 733,641 + HGI48_RS03490 0.63 -2.0 733,642 - HGI48_RS03490 0.63 +1.0 733,726 - HGI48_RS03490 0.69 +1.6 733,773 + HGI48_RS03490 0.72 +0.2 733,815 + HGI48_RS03490 0.75 -1.1 733,863 + -1.1 733,974 - HGI48_RS03490 0.87 +0.3 733,979 + HGI48_RS03490 0.87 +0.0 733,979 + HGI48_RS03490 0.87 +0.7 733,980 - HGI48_RS03490 0.87 -1.2 734,003 + HGI48_RS03490 0.89 -1.1 734,004 - HGI48_RS03490 0.89 -2.3 734,088 + -1.2 734,089 - +0.2 734,092 + -1.8 734,156 + -1.8 734,156 + -1.3 734,159 - -0.7 734,247 - HGI48_RS03495 0.18 -0.2 734,444 - HGI48_RS03495 0.74 +0.3 734,497 + HGI48_RS03495 0.89 +1.2 734,681 + -2.1 734,857 - HGI48_RS03500 0.16 +0.2 734,916 + HGI48_RS03500 0.21 -2.3 734,923 - HGI48_RS03500 0.21 +0.2 734,923 - HGI48_RS03500 0.21 -0.2 735,015 + HGI48_RS03500 0.28 +1.1 735,016 - HGI48_RS03500 0.29 +0.7 735,019 + HGI48_RS03500 0.29 -1.1 735,020 - HGI48_RS03500 0.29 -0.7 735,020 - HGI48_RS03500 0.29 +0.3 735,022 - HGI48_RS03500 0.29 -1.3 735,114 + HGI48_RS03500 0.36 +0.5
Or see this region's nucleotide sequence