Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03435 and HGI48_RS03440 are separated by 272 nucleotides HGI48_RS03440 and HGI48_RS03445 are separated by 89 nucleotides HGI48_RS03445 and HGI48_RS03450 are separated by 57 nucleotides
HGI48_RS03435: HGI48_RS03435 - MHS family MFS transporter, at 720,933 to 722,258
_RS03435
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
HGI48_RS03445: HGI48_RS03445 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 723,520 to 724,236
_RS03445
HGI48_RS03450: HGI48_RS03450 - single-stranded-DNA-specific exonuclease RecJ, at 724,294 to 726,024
_RS03450
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 721.615 kb on + strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand at 721.772 kb on - strand, within HGI48_RS03435 at 721.891 kb on - strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.929 kb on + strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 722.007 kb on + strand, within HGI48_RS03435 at 722.129 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.140 kb on + strand at 722.205 kb on + strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.277 kb on - strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.389 kb on - strand at 722.389 kb on - strand at 722.453 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.489 kb on - strand at 722.623 kb on + strand, within HGI48_RS03440 at 723.221 kb on + strand, within HGI48_RS03440 at 723.368 kb on + strand at 723.506 kb on - strand at 723.513 kb on + strand at 723.514 kb on - strand at 723.533 kb on + strand at 723.533 kb on + strand at 723.534 kb on - strand at 723.536 kb on + strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand at 723.695 kb on - strand, within HGI48_RS03445 at 723.777 kb on + strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.824 kb on - strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.853 kb on - strand, within HGI48_RS03445 at 723.905 kb on + strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.914 kb on - strand, within HGI48_RS03445 at 723.915 kb on + strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.941 kb on - strand, within HGI48_RS03445 at 723.950 kb on - strand, within HGI48_RS03445 at 724.071 kb on + strand, within HGI48_RS03445 at 724.260 kb on - strand at 724.276 kb on + strand at 724.276 kb on + strand at 724.277 kb on - strand at 724.277 kb on - strand at 724.379 kb on - strand at 724.394 kb on + strand at 724.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 721,615 + HGI48_RS03435 0.51 -0.1 721,615 + HGI48_RS03435 0.51 -0.5 721,616 - HGI48_RS03435 0.52 -0.2 721,616 - HGI48_RS03435 0.52 +1.1 721,616 - HGI48_RS03435 0.52 +0.1 721,616 - HGI48_RS03435 0.52 +0.1 721,616 - HGI48_RS03435 0.52 -1.1 721,616 - +1.7 721,772 - HGI48_RS03435 0.63 -1.2 721,891 - HGI48_RS03435 0.72 -0.1 721,906 + HGI48_RS03435 0.73 -1.1 721,906 + HGI48_RS03435 0.73 -2.1 721,906 + HGI48_RS03435 0.73 +0.9 721,907 - HGI48_RS03435 0.73 -1.1 721,907 - HGI48_RS03435 0.73 -1.5 721,929 + HGI48_RS03435 0.75 +0.3 721,930 - HGI48_RS03435 0.75 -0.8 721,930 - HGI48_RS03435 0.75 +1.0 722,007 + HGI48_RS03435 0.81 -0.5 722,129 + -1.2 722,134 + -0.5 722,134 + -0.1 722,134 + -0.4 722,134 + -0.3 722,134 + +0.8 722,134 + +0.5 722,134 + +0.1 722,134 + +0.3 722,135 - -0.2 722,135 - +0.4 722,135 - -0.4 722,135 - +0.5 722,135 - -1.5 722,135 - -0.7 722,135 - -0.8 722,140 + +0.2 722,205 + -0.5 722,234 + +0.5 722,234 + -1.1 722,277 - -0.5 722,296 + -1.0 722,296 + -1.5 722,296 + -0.5 722,296 + -0.2 722,296 + -0.2 722,296 + +0.0 722,296 + +0.7 722,296 + -1.5 722,296 + +0.1 722,296 + -0.5 722,297 - +0.8 722,297 - -1.5 722,297 - -1.8 722,297 - +0.5 722,297 - -0.1 722,297 - -0.7 722,297 - -0.2 722,388 + +0.2 722,388 + -0.8 722,388 + +1.0 722,388 + -0.3 722,388 + +0.0 722,389 - -1.5 722,389 - -1.1 722,453 + -1.5 722,464 + +0.1 722,464 + -1.8 722,464 + -0.8 722,489 - -0.7 722,623 + HGI48_RS03440 0.10 -0.6 723,221 + HGI48_RS03440 0.77 -3.1 723,368 + -0.1 723,506 - -2.1 723,513 + -0.2 723,514 - +0.3 723,533 + +0.3 723,533 + -2.7 723,534 - +1.2 723,536 + -0.8 723,537 - +0.3 723,537 - +0.5 723,537 - -0.2 723,537 - -1.1 723,694 + HGI48_RS03445 0.24 +0.5 723,694 + HGI48_RS03445 0.24 -2.1 723,694 + HGI48_RS03445 0.24 -0.5 723,695 - HGI48_RS03445 0.24 +0.2 723,695 - HGI48_RS03445 0.24 +0.5 723,695 - HGI48_RS03445 0.24 +0.3 723,695 - HGI48_RS03445 0.24 -0.2 723,695 - +0.5 723,695 - HGI48_RS03445 0.24 +0.7 723,777 + HGI48_RS03445 0.36 -1.8 723,778 - HGI48_RS03445 0.36 -2.5 723,778 - HGI48_RS03445 0.36 -0.3 723,824 - HGI48_RS03445 0.42 -2.7 723,852 + HGI48_RS03445 0.46 +0.8 723,852 + HGI48_RS03445 0.46 -0.2 723,852 + HGI48_RS03445 0.46 +1.0 723,853 - HGI48_RS03445 0.46 +0.4 723,905 + HGI48_RS03445 0.54 +0.3 723,906 - HGI48_RS03445 0.54 -0.3 723,906 - HGI48_RS03445 0.54 +0.5 723,914 - HGI48_RS03445 0.55 -1.8 723,915 + HGI48_RS03445 0.55 -0.5 723,916 - HGI48_RS03445 0.55 -0.5 723,916 - HGI48_RS03445 0.55 -3.0 723,941 - HGI48_RS03445 0.59 +0.5 723,950 - HGI48_RS03445 0.60 -1.1 724,071 + HGI48_RS03445 0.77 +0.7 724,260 - -1.2 724,276 + +0.8 724,276 + -2.1 724,277 - -2.5 724,277 - -1.4 724,379 - +1.7 724,394 + -0.7 724,395 - +0.7
Or see this region's nucleotide sequence