Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03390 and HGI48_RS03395 are separated by 30 nucleotides HGI48_RS03395 and HGI48_RS03400 are separated by 131 nucleotides HGI48_RS03400 and HGI48_RS03405 are separated by 79 nucleotides HGI48_RS03405 and HGI48_RS03410 are separated by 273 nucleotides
HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090
_RS03390
HGI48_RS03395: HGI48_RS03395 - glycine cleavage system protein GcvH, at 713,121 to 713,528
_RS03395
HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533
_RS03400
HGI48_RS03405: HGI48_RS03405 - HD domain-containing protein, at 716,613 to 717,221
_RS03405
HGI48_RS03410: HGI48_RS03410 - hemolysin III family protein, at 717,495 to 718,145
_RS03410
Position (kb) 713
714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 712.696 kb on - strand, within HGI48_RS03390 at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.148 kb on + strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.149 kb on - strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.150 kb on + strand at 713.151 kb on - strand at 713.151 kb on - strand at 713.193 kb on + strand, within HGI48_RS03395 at 713.247 kb on - strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.331 kb on + strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.332 kb on - strand, within HGI48_RS03395 at 713.526 kb on + strand at 713.527 kb on - strand at 713.527 kb on - strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.566 kb on + strand at 713.567 kb on - strand at 713.638 kb on + strand at 713.639 kb on - strand at 713.639 kb on - strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.909 kb on + strand at 713.910 kb on - strand at 713.910 kb on - strand at 713.984 kb on + strand, within HGI48_RS03400 at 713.984 kb on + strand at 713.985 kb on - strand, within HGI48_RS03400 at 713.985 kb on - strand, within HGI48_RS03400 at 713.987 kb on - strand, within HGI48_RS03400 at 713.993 kb on + strand at 713.995 kb on + strand, within HGI48_RS03400 at 713.996 kb on - strand, within HGI48_RS03400 at 714.280 kb on + strand, within HGI48_RS03400 at 714.281 kb on - strand, within HGI48_RS03400 at 714.281 kb on - strand, within HGI48_RS03400 at 714.284 kb on + strand at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.285 kb on - strand, within HGI48_RS03400 at 714.536 kb on + strand at 714.537 kb on - strand, within HGI48_RS03400 at 714.658 kb on + strand, within HGI48_RS03400 at 714.658 kb on + strand, within HGI48_RS03400 at 714.659 kb on - strand, within HGI48_RS03400 at 714.664 kb on + strand, within HGI48_RS03400 at 714.664 kb on + strand, within HGI48_RS03400 at 714.665 kb on - strand, within HGI48_RS03400 at 714.665 kb on - strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.701 kb on + strand, within HGI48_RS03400 at 714.702 kb on - strand, within HGI48_RS03400 at 714.702 kb on - strand, within HGI48_RS03400 at 714.710 kb on + strand, within HGI48_RS03400 at 714.710 kb on + strand, within HGI48_RS03400 at 714.711 kb on - strand, within HGI48_RS03400 at 714.711 kb on - strand at 714.826 kb on + strand, within HGI48_RS03400 at 714.975 kb on + strand, within HGI48_RS03400 at 715.103 kb on + strand, within HGI48_RS03400 at 715.103 kb on + strand, within HGI48_RS03400 at 715.344 kb on - strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.357 kb on + strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.358 kb on - strand, within HGI48_RS03400 at 715.544 kb on - strand, within HGI48_RS03400 at 715.616 kb on + strand, within HGI48_RS03400 at 715.617 kb on - strand, within HGI48_RS03400 at 715.637 kb on + strand, within HGI48_RS03400 at 715.668 kb on + strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.669 kb on - strand, within HGI48_RS03400 at 715.679 kb on + strand, within HGI48_RS03400 at 715.679 kb on + strand, within HGI48_RS03400 at 715.680 kb on - strand, within HGI48_RS03400 at 715.694 kb on + strand, within HGI48_RS03400 at 715.694 kb on + strand, within HGI48_RS03400 at 715.695 kb on - strand, within HGI48_RS03400 at 715.695 kb on - strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.732 kb on + strand, within HGI48_RS03400 at 715.733 kb on - strand, within HGI48_RS03400 at 715.745 kb on + strand, within HGI48_RS03400 at 715.745 kb on + strand, within HGI48_RS03400 at 715.942 kb on + strand, within HGI48_RS03400 at 715.942 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand, within HGI48_RS03400 at 715.964 kb on + strand at 715.965 kb on - strand, within HGI48_RS03400 at 715.965 kb on - strand, within HGI48_RS03400 at 715.965 kb on - strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.030 kb on + strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.031 kb on - strand, within HGI48_RS03400 at 716.058 kb on - strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.069 kb on + strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.070 kb on - strand, within HGI48_RS03400 at 716.177 kb on + strand, within HGI48_RS03400 at 716.304 kb on + strand at 716.304 kb on + strand at 716.304 kb on + strand at 716.304 kb on + strand at 716.305 kb on - strand at 716.305 kb on - strand at 716.352 kb on + strand at 716.447 kb on + strand at 716.448 kb on - strand at 716.448 kb on - strand at 716.491 kb on + strand at 716.492 kb on - strand at 716.532 kb on - strand at 716.545 kb on - strand at 716.594 kb on + strand at 716.595 kb on - strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.614 kb on + strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.615 kb on - strand at 716.836 kb on + strand, within HGI48_RS03405 at 716.837 kb on - strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.950 kb on + strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.951 kb on - strand, within HGI48_RS03405 at 716.958 kb on + strand, within HGI48_RS03405 at 716.959 kb on - strand, within HGI48_RS03405 at 716.959 kb on - strand at 717.040 kb on + strand, within HGI48_RS03405 at 717.240 kb on - strand at 717.240 kb on - strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.250 kb on + strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.251 kb on - strand at 717.256 kb on - strand at 717.270 kb on - strand at 717.288 kb on + strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.289 kb on - strand at 717.330 kb on + strand at 717.330 kb on + strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.434 kb on - strand at 717.444 kb on + strand at 717.445 kb on - strand at 717.467 kb on + strand at 717.467 kb on + strand at 717.468 kb on - strand at 717.468 kb on - strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.524 kb on + strand at 717.525 kb on - strand at 717.525 kb on - strand at 717.525 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 712,696 - HGI48_RS03390 0.64 -0.9 713,148 + -1.3 713,148 + +0.1 713,148 + +0.5 713,148 + -2.1 713,148 + -0.8 713,148 + -1.1 713,149 - +0.5 713,149 - -1.3 713,149 - -1.1 713,149 - +0.2 713,150 + -0.8 713,150 + -0.2 713,150 + +0.7 713,150 + +2.8 713,150 + -0.1 713,151 - -0.5 713,151 - +1.8 713,193 + HGI48_RS03395 0.18 -2.8 713,247 - HGI48_RS03395 0.31 +1.5 713,331 + HGI48_RS03395 0.51 +0.1 713,331 + HGI48_RS03395 0.51 -0.0 713,331 + HGI48_RS03395 0.51 +0.8 713,331 + HGI48_RS03395 0.51 -2.3 713,332 - HGI48_RS03395 0.52 +0.2 713,332 - HGI48_RS03395 0.52 -0.9 713,332 - HGI48_RS03395 0.52 +0.5 713,332 - HGI48_RS03395 0.52 +0.1 713,526 + -1.1 713,527 - +0.4 713,527 - +0.3 713,566 + -1.8 713,566 + -0.5 713,566 + +0.5 713,566 + -0.2 713,566 + +1.0 713,567 - +0.4 713,638 + -1.2 713,639 - -1.3 713,639 - +2.3 713,909 + -2.2 713,909 + -0.1 713,909 + +0.3 713,910 - +0.0 713,910 - +0.4 713,984 + HGI48_RS03400 0.11 +0.8 713,984 + +1.5 713,985 - HGI48_RS03400 0.11 +1.1 713,985 - HGI48_RS03400 0.11 -1.0 713,987 - HGI48_RS03400 0.11 -1.8 713,993 + +1.5 713,995 + HGI48_RS03400 0.12 +0.4 713,996 - HGI48_RS03400 0.12 -1.3 714,280 + HGI48_RS03400 0.22 +0.3 714,281 - HGI48_RS03400 0.22 -0.2 714,281 - HGI48_RS03400 0.22 -0.3 714,284 + -0.1 714,285 - HGI48_RS03400 0.22 -0.5 714,285 - HGI48_RS03400 0.22 -1.4 714,285 - HGI48_RS03400 0.22 -0.1 714,285 - HGI48_RS03400 0.22 -0.5 714,536 + +0.9 714,537 - HGI48_RS03400 0.31 -1.2 714,658 + HGI48_RS03400 0.35 -1.1 714,658 + HGI48_RS03400 0.35 -0.5 714,659 - HGI48_RS03400 0.35 -0.7 714,664 + HGI48_RS03400 0.35 +1.0 714,664 + HGI48_RS03400 0.35 +1.4 714,665 - HGI48_RS03400 0.35 -2.0 714,665 - HGI48_RS03400 0.35 +1.0 714,701 + HGI48_RS03400 0.36 -1.7 714,701 + HGI48_RS03400 0.36 +0.4 714,701 + HGI48_RS03400 0.36 -0.6 714,701 + HGI48_RS03400 0.36 +0.0 714,701 + HGI48_RS03400 0.36 -0.8 714,701 + HGI48_RS03400 0.36 -3.3 714,702 - HGI48_RS03400 0.36 -0.6 714,702 - HGI48_RS03400 0.36 -1.5 714,710 + HGI48_RS03400 0.37 -0.6 714,710 + HGI48_RS03400 0.37 -0.3 714,711 - HGI48_RS03400 0.37 -0.5 714,711 - +1.3 714,826 + HGI48_RS03400 0.41 -0.6 714,975 + HGI48_RS03400 0.46 -0.8 715,103 + HGI48_RS03400 0.50 -0.2 715,103 + HGI48_RS03400 0.50 -0.9 715,344 - HGI48_RS03400 0.59 -0.1 715,357 + HGI48_RS03400 0.59 -0.4 715,357 + HGI48_RS03400 0.59 -0.5 715,357 + HGI48_RS03400 0.59 -0.5 715,357 + HGI48_RS03400 0.59 -1.8 715,358 - HGI48_RS03400 0.59 -2.9 715,358 - HGI48_RS03400 0.59 -0.5 715,358 - HGI48_RS03400 0.59 -0.5 715,544 - HGI48_RS03400 0.66 +0.0 715,616 + HGI48_RS03400 0.68 +1.1 715,617 - HGI48_RS03400 0.68 -1.1 715,637 + HGI48_RS03400 0.69 +0.3 715,668 + HGI48_RS03400 0.70 +0.7 715,669 - HGI48_RS03400 0.70 +0.5 715,669 - HGI48_RS03400 0.70 +0.2 715,669 - HGI48_RS03400 0.70 -2.3 715,679 + HGI48_RS03400 0.70 +0.1 715,679 + HGI48_RS03400 0.70 -1.5 715,680 - HGI48_RS03400 0.70 -0.8 715,694 + HGI48_RS03400 0.71 -2.4 715,694 + HGI48_RS03400 0.71 -0.5 715,695 - HGI48_RS03400 0.71 -0.3 715,695 - HGI48_RS03400 0.71 +0.2 715,732 + HGI48_RS03400 0.72 +0.2 715,732 + HGI48_RS03400 0.72 -0.5 715,732 + HGI48_RS03400 0.72 +1.2 715,733 - HGI48_RS03400 0.72 -0.1 715,745 + HGI48_RS03400 0.73 +0.1 715,745 + HGI48_RS03400 0.73 -0.5 715,942 + HGI48_RS03400 0.79 -0.3 715,942 + HGI48_RS03400 0.79 -0.1 715,964 + HGI48_RS03400 0.80 +0.3 715,964 + HGI48_RS03400 0.80 -0.8 715,964 + HGI48_RS03400 0.80 -0.8 715,964 + HGI48_RS03400 0.80 -0.8 715,964 + -0.1 715,965 - HGI48_RS03400 0.80 +1.1 715,965 - HGI48_RS03400 0.80 +0.0 715,965 - HGI48_RS03400 0.80 -0.3 716,030 + HGI48_RS03400 0.82 -1.8 716,030 + HGI48_RS03400 0.82 +0.8 716,030 + HGI48_RS03400 0.82 -0.6 716,031 - HGI48_RS03400 0.82 -2.5 716,031 - HGI48_RS03400 0.82 +0.2 716,031 - HGI48_RS03400 0.82 +2.3 716,058 - HGI48_RS03400 0.83 -0.6 716,069 + HGI48_RS03400 0.84 -0.9 716,069 + HGI48_RS03400 0.84 -0.1 716,069 + HGI48_RS03400 0.84 -1.1 716,069 + HGI48_RS03400 0.84 -1.2 716,069 + HGI48_RS03400 0.84 -0.1 716,070 - HGI48_RS03400 0.84 -0.6 716,070 - HGI48_RS03400 0.84 -0.0 716,070 - HGI48_RS03400 0.84 +1.7 716,070 - HGI48_RS03400 0.84 +2.3 716,177 + HGI48_RS03400 0.88 -1.1 716,304 + -0.2 716,304 + +0.1 716,304 + -0.6 716,304 + -0.9 716,305 - +0.8 716,305 - -0.8 716,352 + -0.2 716,447 + +1.2 716,448 - -0.4 716,448 - +0.3 716,491 + -2.5 716,492 - -0.5 716,532 - -0.7 716,545 - -0.4 716,594 + +0.5 716,595 - +1.1 716,614 + -1.1 716,614 + -0.8 716,614 + +1.1 716,614 + -0.2 716,615 - -0.5 716,615 - +2.5 716,615 - +0.5 716,615 - -0.9 716,615 - +0.5 716,615 - -0.2 716,836 + HGI48_RS03405 0.37 +0.5 716,837 - HGI48_RS03405 0.37 -0.4 716,950 + HGI48_RS03405 0.55 -0.8 716,950 + HGI48_RS03405 0.55 -1.2 716,950 + HGI48_RS03405 0.55 +0.7 716,951 - HGI48_RS03405 0.56 -1.5 716,951 - HGI48_RS03405 0.56 -0.1 716,951 - HGI48_RS03405 0.56 +0.3 716,958 + HGI48_RS03405 0.57 -0.2 716,959 - HGI48_RS03405 0.57 -0.0 716,959 - +1.3 717,040 + HGI48_RS03405 0.70 -0.8 717,240 - +0.7 717,240 - +1.3 717,250 + +0.8 717,250 + +0.9 717,250 + -0.2 717,250 + +0.5 717,251 - -0.1 717,251 - -0.6 717,251 - -0.6 717,251 - -2.2 717,256 - +0.0 717,270 - +0.5 717,288 + -0.5 717,289 - +1.0 717,289 - +0.8 717,289 - -1.2 717,289 - -1.5 717,330 + +1.2 717,330 + -0.2 717,434 - -0.2 717,434 - -0.8 717,434 - -0.5 717,434 - -0.7 717,434 - -0.4 717,434 - +1.2 717,444 + -0.6 717,445 - +1.5 717,467 + -0.5 717,467 + +0.3 717,468 - +0.6 717,468 - -0.5 717,524 + +1.0 717,524 + -1.5 717,524 + +0.5 717,525 - -0.7 717,525 - +0.7 717,525 - -1.5
Or see this region's nucleotide sequence