Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03190 and HGI48_RS03195 are separated by 158 nucleotides HGI48_RS03195 and HGI48_RS03200 are separated by 47 nucleotides HGI48_RS03200 and HGI48_RS03205 are separated by 105 nucleotides HGI48_RS03205 and HGI48_RS03210 are separated by 8 nucleotides
HGI48_RS03190: HGI48_RS03190 - ribosome assembly RNA-binding protein YhbY, at 674,701 to 674,994
_RS03190
HGI48_RS03195: HGI48_RS03195 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 675,153 to 675,782
_RS03195
HGI48_RS03200: HGI48_RS03200 - ATP-dependent zinc metalloprotease FtsH, at 675,830 to 677,782
_RS03200
HGI48_RS03205: HGI48_RS03205 - dihydropteroate synthase, at 677,888 to 678,721
_RS03205
HGI48_RS03210: HGI48_RS03210 - phosphoglucosamine mutase, at 678,730 to 680,067
_RS03210
Position (kb) 675
676
677
678 Strain fitness (log2 ratio) -2
-1
0
1 at 674.893 kb on + strand at 674.893 kb on + strand, within HGI48_RS03190 at 674.893 kb on + strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.894 kb on - strand, within HGI48_RS03190 at 674.928 kb on + strand, within HGI48_RS03190 at 674.929 kb on - strand, within HGI48_RS03190 at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.113 kb on + strand at 675.114 kb on - strand at 675.117 kb on + strand at 675.117 kb on + strand at 675.117 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.123 kb on + strand at 675.124 kb on - strand at 675.780 kb on + strand at 675.780 kb on + strand at 677.734 kb on + strand at 677.734 kb on + strand at 677.735 kb on - strand at 677.752 kb on + strand at 677.752 kb on + strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.753 kb on - strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.780 kb on + strand at 677.781 kb on - strand at 677.781 kb on - strand at 677.781 kb on - strand at 677.781 kb on - strand at 677.781 kb on - strand at 677.781 kb on - strand at 677.859 kb on - strand at 677.875 kb on + strand at 677.875 kb on + strand at 678.348 kb on - strand, within HGI48_RS03205 at 678.392 kb on - strand, within HGI48_RS03205 at 678.392 kb on - strand, within HGI48_RS03205 at 678.468 kb on + strand, within HGI48_RS03205 at 678.475 kb on + strand, within HGI48_RS03205 at 678.476 kb on - strand, within HGI48_RS03205 at 678.684 kb on + strand at 678.684 kb on + strand at 678.684 kb on + strand at 678.685 kb on - strand at 678.685 kb on - strand at 678.685 kb on - strand at 678.685 kb on - strand at 678.685 kb on - strand at 678.685 kb on - strand at 678.719 kb on + strand at 678.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 674,893 + +1.3 674,893 + HGI48_RS03190 0.65 +0.5 674,893 + HGI48_RS03190 0.65 -0.9 674,894 - HGI48_RS03190 0.66 -0.5 674,894 - HGI48_RS03190 0.66 +0.5 674,894 - HGI48_RS03190 0.66 +0.7 674,928 + HGI48_RS03190 0.77 -0.5 674,929 - HGI48_RS03190 0.78 -0.9 675,113 + +0.9 675,113 + -0.3 675,113 + +0.2 675,113 + -0.8 675,113 + +0.9 675,113 + -1.1 675,113 + +0.0 675,113 + -0.1 675,113 + +0.7 675,113 + +0.2 675,114 - +0.0 675,117 + -1.5 675,117 + +0.9 675,117 + -0.8 675,123 + -0.5 675,123 + +1.1 675,123 + +0.5 675,123 + -1.5 675,123 + +0.3 675,124 - +0.5 675,780 + +0.5 675,780 + +0.3 677,734 + +0.7 677,734 + +0.3 677,735 - -0.4 677,752 + -0.1 677,752 + -0.2 677,753 - -2.6 677,753 - -1.1 677,753 - -0.9 677,753 - -0.9 677,753 - -2.1 677,753 - -0.6 677,753 - -1.1 677,780 + -1.5 677,780 + -1.3 677,780 + +1.4 677,780 + -0.5 677,780 + -2.1 677,780 + -0.7 677,780 + -1.3 677,780 + -0.5 677,780 + +0.8 677,781 - +0.7 677,781 - -1.2 677,781 - -0.1 677,781 - +0.3 677,781 - +0.2 677,781 - -1.1 677,859 - -2.1 677,875 + +1.7 677,875 + +1.5 678,348 - HGI48_RS03205 0.55 +0.2 678,392 - HGI48_RS03205 0.60 -0.2 678,392 - HGI48_RS03205 0.60 +0.5 678,468 + HGI48_RS03205 0.70 -0.2 678,475 + HGI48_RS03205 0.70 +1.3 678,476 - HGI48_RS03205 0.71 +0.1 678,684 + +0.1 678,684 + -0.2 678,684 + -2.3 678,685 - -0.5 678,685 - -0.4 678,685 - -0.2 678,685 - +0.1 678,685 - -2.1 678,685 - -1.1 678,719 + -1.0 678,729 + -0.9
Or see this region's nucleotide sequence