Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02870 and HGI48_RS02875 are separated by 70 nucleotides HGI48_RS02875 and HGI48_RS02880 are separated by 12 nucleotides
HGI48_RS02870: HGI48_RS02870 - flavocytochrome c, at 619,801 to 622,578
_RS02870
HGI48_RS02875: HGI48_RS02875 - FAD:protein FMN transferase, at 622,649 to 623,620
_RS02875
HGI48_RS02880: HGI48_RS02880 - TetR/AcrR family transcriptional regulator, at 623,633 to 624,214
_RS02880
Position (kb) 622
623
624 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 621.706 kb on - strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.747 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand at 621.976 kb on - strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.983 kb on - strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand at 622.109 kb on - strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.117 kb on - strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.264 kb on + strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.348 kb on + strand at 622.348 kb on + strand at 622.348 kb on + strand at 622.349 kb on - strand at 622.398 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.568 kb on + strand at 622.568 kb on + strand at 622.569 kb on - strand at 622.569 kb on - strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.579 kb on + strand at 622.580 kb on - strand at 622.686 kb on + strand at 622.687 kb on - strand at 622.687 kb on - strand at 622.856 kb on - strand at 622.876 kb on + strand, within HGI48_RS02875 at 622.919 kb on - strand, within HGI48_RS02875 at 623.058 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand at 623.113 kb on + strand, within HGI48_RS02875 at 623.113 kb on + strand, within HGI48_RS02875 at 623.156 kb on + strand at 623.156 kb on + strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.362 kb on + strand at 623.363 kb on - strand at 623.363 kb on - strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand at 623.451 kb on - strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.495 kb on + strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.573 kb on + strand at 623.573 kb on + strand at 623.574 kb on - strand at 623.581 kb on + strand at 623.582 kb on - strand at 623.582 kb on - strand at 623.582 kb on - strand at 623.819 kb on + strand, within HGI48_RS02880 at 623.819 kb on + strand at 623.819 kb on + strand at 623.832 kb on + strand, within HGI48_RS02880 at 623.832 kb on + strand, within HGI48_RS02880 at 623.832 kb on + strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.833 kb on - strand, within HGI48_RS02880 at 623.843 kb on + strand, within HGI48_RS02880 at 623.844 kb on - strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand, within HGI48_RS02880 at 623.870 kb on + strand at 623.871 kb on - strand, within HGI48_RS02880 at 623.871 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.938 kb on - strand, within HGI48_RS02880 at 623.969 kb on - strand, within HGI48_RS02880 at 624.070 kb on - strand, within HGI48_RS02880 at 624.070 kb on - strand at 624.166 kb on + strand at 624.167 kb on - strand at 624.203 kb on + strand at 624.265 kb on + strand at 624.265 kb on + strand at 624.266 kb on - strand at 624.278 kb on + strand at 624.279 kb on - strand at 624.290 kb on + strand at 624.342 kb on + strand at 624.400 kb on + strand at 624.400 kb on + strand at 624.400 kb on + strand at 624.401 kb on - strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.402 kb on + strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.403 kb on - strand at 624.482 kb on - strand at 624.547 kb on + strand at 624.547 kb on + strand at 624.548 kb on - strand at 624.548 kb on - strand at 624.548 kb on - strand at 624.551 kb on + strand at 624.551 kb on + strand at 624.552 kb on - strand at 624.552 kb on - strand at 624.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 621,706 - HGI48_RS02870 0.69 -0.6 621,738 + HGI48_RS02870 0.70 -0.5 621,738 + HGI48_RS02870 0.70 +0.5 621,738 + HGI48_RS02870 0.70 -0.2 621,738 + HGI48_RS02870 0.70 +0.9 621,747 + HGI48_RS02870 0.70 -0.0 621,975 + HGI48_RS02870 0.78 -1.2 621,975 + HGI48_RS02870 0.78 +0.2 621,975 + HGI48_RS02870 0.78 +1.1 621,975 + HGI48_RS02870 0.78 -0.8 621,975 + HGI48_RS02870 0.78 +0.2 621,975 + HGI48_RS02870 0.78 +0.7 621,976 - HGI48_RS02870 0.78 +1.5 621,976 - HGI48_RS02870 0.78 +0.9 621,976 - HGI48_RS02870 0.78 +2.1 621,976 - +0.5 621,976 - HGI48_RS02870 0.78 +0.1 621,982 + HGI48_RS02870 0.79 +0.1 621,982 + HGI48_RS02870 0.79 -1.7 621,983 - HGI48_RS02870 0.79 -1.9 622,108 + HGI48_RS02870 0.83 -0.1 622,108 + HGI48_RS02870 0.83 -0.4 622,108 + HGI48_RS02870 0.83 +0.4 622,108 + HGI48_RS02870 0.83 -0.4 622,108 + HGI48_RS02870 0.83 +0.3 622,108 + HGI48_RS02870 0.83 -0.0 622,108 + HGI48_RS02870 0.83 +0.9 622,109 - HGI48_RS02870 0.83 -1.5 622,109 - HGI48_RS02870 0.83 -1.5 622,109 - HGI48_RS02870 0.83 -0.5 622,109 - +3.5 622,109 - HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 +0.4 622,114 + HGI48_RS02870 0.83 -0.2 622,114 + HGI48_RS02870 0.83 +0.3 622,114 + HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 -0.0 622,114 + HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 -1.2 622,114 + HGI48_RS02870 0.83 -1.5 622,114 + HGI48_RS02870 0.83 -0.8 622,114 + HGI48_RS02870 0.83 +0.7 622,115 - HGI48_RS02870 0.83 -0.9 622,115 - HGI48_RS02870 0.83 +0.8 622,115 - HGI48_RS02870 0.83 -2.2 622,115 - HGI48_RS02870 0.83 -0.1 622,115 - HGI48_RS02870 0.83 +0.0 622,117 - HGI48_RS02870 0.83 -1.3 622,165 + HGI48_RS02870 0.85 -2.2 622,165 + HGI48_RS02870 0.85 +0.7 622,166 - HGI48_RS02870 0.85 -1.0 622,166 - HGI48_RS02870 0.85 -0.7 622,166 - HGI48_RS02870 0.85 -1.5 622,166 - HGI48_RS02870 0.85 -0.5 622,264 + HGI48_RS02870 0.89 -0.8 622,265 - HGI48_RS02870 0.89 -0.0 622,265 - HGI48_RS02870 0.89 +0.3 622,265 - HGI48_RS02870 0.89 -0.0 622,348 + -0.9 622,348 + +0.3 622,348 + -0.2 622,349 - +0.3 622,398 + -2.0 622,564 + -2.8 622,564 + +0.5 622,564 + +1.0 622,565 - -0.7 622,565 - -0.0 622,565 - -0.3 622,568 + -0.5 622,568 + -0.6 622,569 - -0.1 622,569 - -1.0 622,576 + -1.5 622,576 + -2.5 622,576 + +1.0 622,576 + -0.7 622,577 - -0.0 622,577 - +0.8 622,577 - -0.2 622,577 - -0.6 622,579 + +0.0 622,580 - -0.8 622,686 + +0.5 622,687 - +1.8 622,687 - -0.6 622,856 - +0.5 622,876 + HGI48_RS02875 0.23 -0.7 622,919 - HGI48_RS02875 0.28 -1.0 623,058 + HGI48_RS02875 0.42 +1.1 623,111 + HGI48_RS02875 0.48 -1.3 623,111 + HGI48_RS02875 0.48 -1.8 623,112 - HGI48_RS02875 0.48 -0.5 623,112 - HGI48_RS02875 0.48 +0.5 623,112 - HGI48_RS02875 0.48 -0.5 623,112 - -0.0 623,113 + HGI48_RS02875 0.48 -3.0 623,113 + HGI48_RS02875 0.48 -0.7 623,156 + +0.5 623,156 + HGI48_RS02875 0.52 +0.9 623,157 - HGI48_RS02875 0.52 -1.0 623,157 - HGI48_RS02875 0.52 -0.0 623,321 + HGI48_RS02875 0.69 -0.8 623,321 + HGI48_RS02875 0.69 -1.0 623,322 - HGI48_RS02875 0.69 +1.2 623,322 - HGI48_RS02875 0.69 -1.8 623,322 - HGI48_RS02875 0.69 -0.5 623,322 - HGI48_RS02875 0.69 -1.5 623,322 - HGI48_RS02875 0.69 -0.2 623,331 - HGI48_RS02875 0.70 -0.6 623,331 - HGI48_RS02875 0.70 +0.1 623,362 + +2.4 623,363 - +1.5 623,363 - HGI48_RS02875 0.73 +0.5 623,450 + HGI48_RS02875 0.82 -1.0 623,450 + HGI48_RS02875 0.82 -0.6 623,450 + HGI48_RS02875 0.82 -0.2 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 +0.3 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 -3.3 623,451 - HGI48_RS02875 0.83 +0.9 623,451 - HGI48_RS02875 0.83 +1.1 623,451 - HGI48_RS02875 0.83 -0.8 623,451 - HGI48_RS02875 0.83 +0.1 623,451 - HGI48_RS02875 0.83 -0.0 623,451 - -0.0 623,451 - -1.0 623,495 + HGI48_RS02875 0.87 +0.5 623,495 + -0.0 623,495 + HGI48_RS02875 0.87 -0.4 623,496 - HGI48_RS02875 0.87 +1.3 623,496 - HGI48_RS02875 0.87 +0.2 623,496 - HGI48_RS02875 0.87 -0.9 623,496 - HGI48_RS02875 0.87 -2.3 623,573 + +0.2 623,573 + +0.1 623,574 - -0.5 623,581 + -0.5 623,582 - -0.2 623,582 - +1.0 623,582 - -0.8 623,819 + HGI48_RS02880 0.32 -0.1 623,819 + -0.5 623,819 + -1.0 623,832 + HGI48_RS02880 0.34 +0.1 623,832 + HGI48_RS02880 0.34 -0.9 623,832 + HGI48_RS02880 0.34 -0.0 623,833 - HGI48_RS02880 0.34 +0.0 623,833 - HGI48_RS02880 0.34 +1.3 623,833 - HGI48_RS02880 0.34 +0.5 623,833 - HGI48_RS02880 0.34 -1.5 623,833 - HGI48_RS02880 0.34 -0.2 623,833 - HGI48_RS02880 0.34 -0.1 623,833 - HGI48_RS02880 0.34 +0.3 623,843 + HGI48_RS02880 0.36 +0.3 623,844 - HGI48_RS02880 0.36 +0.9 623,870 + HGI48_RS02880 0.41 -0.3 623,870 + HGI48_RS02880 0.41 -0.8 623,870 + HGI48_RS02880 0.41 -0.1 623,870 + HGI48_RS02880 0.41 -0.0 623,870 + -0.5 623,871 - HGI48_RS02880 0.41 -0.8 623,871 - HGI48_RS02880 0.41 +0.5 623,938 - HGI48_RS02880 0.52 -0.5 623,938 - HGI48_RS02880 0.52 -0.4 623,938 - HGI48_RS02880 0.52 -2.3 623,938 - HGI48_RS02880 0.52 -0.6 623,969 - HGI48_RS02880 0.58 -0.5 624,070 - HGI48_RS02880 0.75 +0.2 624,070 - -1.0 624,166 + +0.8 624,167 - -0.0 624,203 + +0.2 624,265 + +1.1 624,265 + +0.5 624,266 - -0.5 624,278 + -0.2 624,279 - -2.0 624,290 + -1.3 624,342 + -1.3 624,400 + -1.8 624,400 + +0.1 624,400 + -0.6 624,401 - -0.0 624,402 + +1.3 624,402 + -1.3 624,402 + -0.1 624,402 + -0.5 624,402 + -0.4 624,402 + +0.3 624,402 + -1.5 624,402 + +0.8 624,402 + +0.7 624,403 - -0.0 624,403 - -0.5 624,403 - +0.1 624,403 - +0.3 624,403 - -0.5 624,403 - -1.5 624,403 - -0.7 624,403 - -0.6 624,403 - +1.3 624,403 - -1.0 624,482 - -1.3 624,547 + +1.2 624,547 + -0.3 624,548 - +1.0 624,548 - -3.0 624,548 - -2.3 624,551 + +1.2 624,551 + +0.1 624,552 - -0.5 624,552 - +0.1 624,552 - -1.5
Or see this region's nucleotide sequence