Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02865 and HGI48_RS02870 are separated by 544 nucleotides HGI48_RS02870 and HGI48_RS02875 are separated by 70 nucleotides
HGI48_RS02865: HGI48_RS02865 - FAD:protein FMN transferase ApbE, at 618,210 to 619,256
_RS02865
HGI48_RS02870: HGI48_RS02870 - flavocytochrome c, at 619,801 to 622,578
_RS02870
HGI48_RS02875: HGI48_RS02875 - FAD:protein FMN transferase, at 622,649 to 623,620
_RS02875
Position (kb) 619
620
621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 618.822 kb on + strand, within HGI48_RS02865 at 618.985 kb on - strand, within HGI48_RS02865 at 619.009 kb on - strand, within HGI48_RS02865 at 619.047 kb on - strand, within HGI48_RS02865 at 619.299 kb on + strand at 619.320 kb on + strand at 619.320 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.322 kb on + strand at 619.323 kb on - strand at 619.323 kb on - strand at 619.487 kb on - strand at 619.492 kb on + strand at 619.582 kb on + strand at 619.641 kb on - strand at 619.659 kb on - strand at 619.700 kb on + strand at 619.704 kb on - strand at 619.704 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.800 kb on + strand at 619.820 kb on + strand at 619.821 kb on - strand at 619.903 kb on + strand at 619.903 kb on + strand at 619.936 kb on + strand at 619.936 kb on + strand at 619.936 kb on + strand at 619.937 kb on - strand at 619.939 kb on + strand at 619.939 kb on + strand at 619.939 kb on + strand at 619.940 kb on - strand at 619.940 kb on - strand at 619.940 kb on - strand at 619.947 kb on - strand at 619.998 kb on + strand at 620.113 kb on + strand, within HGI48_RS02870 at 620.113 kb on + strand, within HGI48_RS02870 at 620.113 kb on + strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.114 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand, within HGI48_RS02870 at 620.320 kb on - strand at 620.323 kb on + strand, within HGI48_RS02870 at 620.323 kb on + strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand, within HGI48_RS02870 at 620.324 kb on - strand at 620.324 kb on - strand, within HGI48_RS02870 at 620.342 kb on - strand, within HGI48_RS02870 at 620.342 kb on - strand at 620.533 kb on + strand, within HGI48_RS02870 at 620.534 kb on - strand, within HGI48_RS02870 at 620.534 kb on - strand at 620.534 kb on - strand, within HGI48_RS02870 at 620.570 kb on - strand, within HGI48_RS02870 at 620.616 kb on + strand, within HGI48_RS02870 at 620.617 kb on - strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.647 kb on + strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.648 kb on - strand, within HGI48_RS02870 at 620.712 kb on + strand at 620.712 kb on + strand, within HGI48_RS02870 at 620.712 kb on + strand, within HGI48_RS02870 at 620.746 kb on + strand, within HGI48_RS02870 at 620.746 kb on + strand, within HGI48_RS02870 at 620.747 kb on - strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.775 kb on + strand, within HGI48_RS02870 at 620.776 kb on - strand, within HGI48_RS02870 at 620.776 kb on - strand, within HGI48_RS02870 at 621.039 kb on + strand, within HGI48_RS02870 at 621.039 kb on + strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.040 kb on - strand, within HGI48_RS02870 at 621.207 kb on + strand at 621.208 kb on - strand, within HGI48_RS02870 at 621.244 kb on + strand, within HGI48_RS02870 at 621.244 kb on + strand, within HGI48_RS02870 at 621.258 kb on - strand, within HGI48_RS02870 at 621.411 kb on - strand at 621.411 kb on - strand, within HGI48_RS02870 at 621.443 kb on - strand, within HGI48_RS02870 at 621.564 kb on + strand, within HGI48_RS02870 at 621.706 kb on - strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.738 kb on + strand, within HGI48_RS02870 at 621.747 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.975 kb on + strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand, within HGI48_RS02870 at 621.976 kb on - strand at 621.976 kb on - strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.982 kb on + strand, within HGI48_RS02870 at 621.983 kb on - strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.108 kb on + strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand, within HGI48_RS02870 at 622.109 kb on - strand at 622.109 kb on - strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.114 kb on + strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.115 kb on - strand, within HGI48_RS02870 at 622.117 kb on - strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.165 kb on + strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.166 kb on - strand, within HGI48_RS02870 at 622.264 kb on + strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.265 kb on - strand, within HGI48_RS02870 at 622.348 kb on + strand at 622.348 kb on + strand at 622.348 kb on + strand at 622.349 kb on - strand at 622.398 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.564 kb on + strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.565 kb on - strand at 622.568 kb on + strand at 622.568 kb on + strand at 622.569 kb on - strand at 622.569 kb on - strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.576 kb on + strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.577 kb on - strand at 622.579 kb on + strand at 622.580 kb on - strand at 622.686 kb on + strand at 622.687 kb on - strand at 622.687 kb on - strand at 622.856 kb on - strand at 622.876 kb on + strand, within HGI48_RS02875 at 622.919 kb on - strand, within HGI48_RS02875 at 623.058 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.111 kb on + strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand, within HGI48_RS02875 at 623.112 kb on - strand at 623.113 kb on + strand, within HGI48_RS02875 at 623.113 kb on + strand, within HGI48_RS02875 at 623.156 kb on + strand at 623.156 kb on + strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.157 kb on - strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.321 kb on + strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.322 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.331 kb on - strand, within HGI48_RS02875 at 623.362 kb on + strand at 623.363 kb on - strand at 623.363 kb on - strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.450 kb on + strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand, within HGI48_RS02875 at 623.451 kb on - strand at 623.451 kb on - strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.495 kb on + strand at 623.495 kb on + strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.496 kb on - strand, within HGI48_RS02875 at 623.573 kb on + strand at 623.573 kb on + strand at 623.574 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 618,822 + HGI48_RS02865 0.58 -1.3 618,985 - HGI48_RS02865 0.74 -1.5 619,009 - HGI48_RS02865 0.76 -0.3 619,047 - HGI48_RS02865 0.80 +1.3 619,299 + -1.3 619,320 + -1.0 619,320 + -1.0 619,322 + -0.5 619,322 + -0.9 619,322 + -1.8 619,322 + +1.3 619,322 + -0.8 619,323 - +0.4 619,323 - -0.8 619,487 - +0.5 619,492 + +0.3 619,582 + +0.5 619,641 - -0.8 619,659 - +0.4 619,700 + -0.0 619,704 - +1.0 619,704 - +1.0 619,782 - +0.8 619,782 - +1.0 619,800 + -1.8 619,820 + -1.3 619,821 - +1.7 619,903 + -2.0 619,903 + -0.4 619,936 + -1.8 619,936 + -1.1 619,936 + -0.9 619,937 - +0.9 619,939 + -0.5 619,939 + +0.1 619,939 + -0.7 619,940 - +0.3 619,940 - +0.5 619,940 - -0.3 619,947 - -1.0 619,998 + +0.1 620,113 + HGI48_RS02870 0.11 -0.8 620,113 + HGI48_RS02870 0.11 -2.3 620,113 + HGI48_RS02870 0.11 -1.5 620,114 - HGI48_RS02870 0.11 +0.1 620,114 - HGI48_RS02870 0.11 +0.9 620,114 - HGI48_RS02870 0.11 -0.6 620,320 - HGI48_RS02870 0.19 +0.3 620,320 - HGI48_RS02870 0.19 -0.0 620,320 - HGI48_RS02870 0.19 -0.0 620,320 - +1.1 620,323 + HGI48_RS02870 0.19 +0.3 620,323 + HGI48_RS02870 0.19 +0.5 620,324 - HGI48_RS02870 0.19 +0.8 620,324 - HGI48_RS02870 0.19 -1.7 620,324 - HGI48_RS02870 0.19 -1.9 620,324 - -0.0 620,324 - HGI48_RS02870 0.19 +1.1 620,342 - HGI48_RS02870 0.19 -1.0 620,342 - -0.0 620,533 + HGI48_RS02870 0.26 -0.1 620,534 - HGI48_RS02870 0.26 +0.3 620,534 - +1.1 620,534 - HGI48_RS02870 0.26 +0.1 620,570 - HGI48_RS02870 0.28 -1.5 620,616 + HGI48_RS02870 0.29 -0.0 620,617 - HGI48_RS02870 0.29 -0.5 620,647 + HGI48_RS02870 0.30 -2.0 620,647 + HGI48_RS02870 0.30 -0.1 620,647 + HGI48_RS02870 0.30 -0.3 620,647 + HGI48_RS02870 0.30 -0.5 620,647 + HGI48_RS02870 0.30 +1.7 620,648 - HGI48_RS02870 0.30 +0.9 620,648 - HGI48_RS02870 0.30 -0.5 620,648 - HGI48_RS02870 0.30 -0.1 620,648 - HGI48_RS02870 0.30 -0.5 620,648 - HGI48_RS02870 0.30 +0.7 620,712 + +1.0 620,712 + HGI48_RS02870 0.33 +1.0 620,712 + HGI48_RS02870 0.33 -1.5 620,746 + HGI48_RS02870 0.34 -0.5 620,746 + HGI48_RS02870 0.34 -0.5 620,747 - HGI48_RS02870 0.34 +1.1 620,775 + HGI48_RS02870 0.35 -1.9 620,775 + HGI48_RS02870 0.35 +0.1 620,775 + HGI48_RS02870 0.35 +0.8 620,776 - HGI48_RS02870 0.35 -1.0 620,776 - HGI48_RS02870 0.35 -0.8 621,039 + HGI48_RS02870 0.45 +0.6 621,039 + HGI48_RS02870 0.45 -0.0 621,040 - HGI48_RS02870 0.45 +0.5 621,040 - HGI48_RS02870 0.45 -1.5 621,040 - HGI48_RS02870 0.45 +0.8 621,207 + +1.8 621,208 - HGI48_RS02870 0.51 -0.0 621,244 + HGI48_RS02870 0.52 -0.2 621,244 + HGI48_RS02870 0.52 +0.1 621,258 - HGI48_RS02870 0.52 +0.1 621,411 - +1.3 621,411 - HGI48_RS02870 0.58 -0.2 621,443 - HGI48_RS02870 0.59 +0.3 621,564 + HGI48_RS02870 0.63 -0.9 621,706 - HGI48_RS02870 0.69 -0.6 621,738 + HGI48_RS02870 0.70 -0.5 621,738 + HGI48_RS02870 0.70 +0.5 621,738 + HGI48_RS02870 0.70 -0.2 621,738 + HGI48_RS02870 0.70 +0.9 621,747 + HGI48_RS02870 0.70 -0.0 621,975 + HGI48_RS02870 0.78 -1.2 621,975 + HGI48_RS02870 0.78 +0.2 621,975 + HGI48_RS02870 0.78 +1.1 621,975 + HGI48_RS02870 0.78 -0.8 621,975 + HGI48_RS02870 0.78 +0.2 621,975 + HGI48_RS02870 0.78 +0.7 621,976 - HGI48_RS02870 0.78 +1.5 621,976 - HGI48_RS02870 0.78 +0.9 621,976 - HGI48_RS02870 0.78 +2.1 621,976 - +0.5 621,976 - HGI48_RS02870 0.78 +0.1 621,982 + HGI48_RS02870 0.79 +0.1 621,982 + HGI48_RS02870 0.79 -1.7 621,983 - HGI48_RS02870 0.79 -1.9 622,108 + HGI48_RS02870 0.83 -0.1 622,108 + HGI48_RS02870 0.83 -0.4 622,108 + HGI48_RS02870 0.83 +0.4 622,108 + HGI48_RS02870 0.83 -0.4 622,108 + HGI48_RS02870 0.83 +0.3 622,108 + HGI48_RS02870 0.83 -0.0 622,108 + HGI48_RS02870 0.83 +0.9 622,109 - HGI48_RS02870 0.83 -1.5 622,109 - HGI48_RS02870 0.83 -1.5 622,109 - HGI48_RS02870 0.83 -0.5 622,109 - +3.5 622,109 - HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 +0.4 622,114 + HGI48_RS02870 0.83 -0.2 622,114 + HGI48_RS02870 0.83 +0.3 622,114 + HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 -0.0 622,114 + HGI48_RS02870 0.83 +1.5 622,114 + HGI48_RS02870 0.83 -1.2 622,114 + HGI48_RS02870 0.83 -1.5 622,114 + HGI48_RS02870 0.83 -0.8 622,114 + HGI48_RS02870 0.83 +0.7 622,115 - HGI48_RS02870 0.83 -0.9 622,115 - HGI48_RS02870 0.83 +0.8 622,115 - HGI48_RS02870 0.83 -2.2 622,115 - HGI48_RS02870 0.83 -0.1 622,115 - HGI48_RS02870 0.83 +0.0 622,117 - HGI48_RS02870 0.83 -1.3 622,165 + HGI48_RS02870 0.85 -2.2 622,165 + HGI48_RS02870 0.85 +0.7 622,166 - HGI48_RS02870 0.85 -1.0 622,166 - HGI48_RS02870 0.85 -0.7 622,166 - HGI48_RS02870 0.85 -1.5 622,166 - HGI48_RS02870 0.85 -0.5 622,264 + HGI48_RS02870 0.89 -0.8 622,265 - HGI48_RS02870 0.89 -0.0 622,265 - HGI48_RS02870 0.89 +0.3 622,265 - HGI48_RS02870 0.89 -0.0 622,348 + -0.9 622,348 + +0.3 622,348 + -0.2 622,349 - +0.3 622,398 + -2.0 622,564 + -2.8 622,564 + +0.5 622,564 + +1.0 622,565 - -0.7 622,565 - -0.0 622,565 - -0.3 622,568 + -0.5 622,568 + -0.6 622,569 - -0.1 622,569 - -1.0 622,576 + -1.5 622,576 + -2.5 622,576 + +1.0 622,576 + -0.7 622,577 - -0.0 622,577 - +0.8 622,577 - -0.2 622,577 - -0.6 622,579 + +0.0 622,580 - -0.8 622,686 + +0.5 622,687 - +1.8 622,687 - -0.6 622,856 - +0.5 622,876 + HGI48_RS02875 0.23 -0.7 622,919 - HGI48_RS02875 0.28 -1.0 623,058 + HGI48_RS02875 0.42 +1.1 623,111 + HGI48_RS02875 0.48 -1.3 623,111 + HGI48_RS02875 0.48 -1.8 623,112 - HGI48_RS02875 0.48 -0.5 623,112 - HGI48_RS02875 0.48 +0.5 623,112 - HGI48_RS02875 0.48 -0.5 623,112 - -0.0 623,113 + HGI48_RS02875 0.48 -3.0 623,113 + HGI48_RS02875 0.48 -0.7 623,156 + +0.5 623,156 + HGI48_RS02875 0.52 +0.9 623,157 - HGI48_RS02875 0.52 -1.0 623,157 - HGI48_RS02875 0.52 -0.0 623,321 + HGI48_RS02875 0.69 -0.8 623,321 + HGI48_RS02875 0.69 -1.0 623,322 - HGI48_RS02875 0.69 +1.2 623,322 - HGI48_RS02875 0.69 -1.8 623,322 - HGI48_RS02875 0.69 -0.5 623,322 - HGI48_RS02875 0.69 -1.5 623,322 - HGI48_RS02875 0.69 -0.2 623,331 - HGI48_RS02875 0.70 -0.6 623,331 - HGI48_RS02875 0.70 +0.1 623,362 + +2.4 623,363 - +1.5 623,363 - HGI48_RS02875 0.73 +0.5 623,450 + HGI48_RS02875 0.82 -1.0 623,450 + HGI48_RS02875 0.82 -0.6 623,450 + HGI48_RS02875 0.82 -0.2 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 +0.3 623,450 + HGI48_RS02875 0.82 -0.5 623,450 + HGI48_RS02875 0.82 -3.3 623,451 - HGI48_RS02875 0.83 +0.9 623,451 - HGI48_RS02875 0.83 +1.1 623,451 - HGI48_RS02875 0.83 -0.8 623,451 - HGI48_RS02875 0.83 +0.1 623,451 - HGI48_RS02875 0.83 -0.0 623,451 - -0.0 623,451 - -1.0 623,495 + HGI48_RS02875 0.87 +0.5 623,495 + -0.0 623,495 + HGI48_RS02875 0.87 -0.4 623,496 - HGI48_RS02875 0.87 +1.3 623,496 - HGI48_RS02875 0.87 +0.2 623,496 - HGI48_RS02875 0.87 -0.9 623,496 - HGI48_RS02875 0.87 -2.3 623,573 + +0.2 623,573 + +0.1 623,574 - -0.5
Or see this region's nucleotide sequence