Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02500 and HGI48_RS02505 are separated by 108 nucleotides HGI48_RS02505 and HGI48_RS02510 are separated by 79 nucleotides HGI48_RS02510 and HGI48_RS02515 are separated by 163 nucleotides
HGI48_RS02500: HGI48_RS02500 - oxidoreductase, at 539,729 to 540,751
_RS02500
HGI48_RS02505: HGI48_RS02505 - FAD-dependent urate hydroxylase HpxO, at 540,860 to 542,014
_RS02505
HGI48_RS02510: HGI48_RS02510 - GntR family transcriptional regulator, at 542,094 to 542,792
_RS02510
HGI48_RS02515: HGI48_RS02515 - DUF2848 domain-containing protein, at 542,956 to 543,648
_RS02515
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.913 kb on + strand, within HGI48_RS02500 at 539.972 kb on + strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand, within HGI48_RS02500 at 539.973 kb on - strand at 540.021 kb on - strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand at 540.024 kb on + strand at 540.024 kb on + strand, within HGI48_RS02500 at 540.024 kb on + strand, within HGI48_RS02500 at 540.025 kb on - strand at 540.025 kb on - strand, within HGI48_RS02500 at 540.059 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.083 kb on - strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.194 kb on + strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.195 kb on - strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.350 kb on + strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.351 kb on - strand, within HGI48_RS02500 at 540.518 kb on - strand, within HGI48_RS02500 at 540.637 kb on + strand at 540.638 kb on - strand, within HGI48_RS02500 at 540.638 kb on - strand, within HGI48_RS02500 at 540.749 kb on + strand at 540.749 kb on + strand at 540.750 kb on - strand at 540.763 kb on + strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.764 kb on - strand at 540.876 kb on + strand at 540.877 kb on - strand at 540.877 kb on - strand at 540.877 kb on - strand at 540.877 kb on - strand at 541.076 kb on + strand, within HGI48_RS02505 at 541.114 kb on + strand, within HGI48_RS02505 at 541.176 kb on + strand, within HGI48_RS02505 at 541.176 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.234 kb on + strand, within HGI48_RS02505 at 541.235 kb on - strand, within HGI48_RS02505 at 541.276 kb on + strand, within HGI48_RS02505 at 541.346 kb on + strand, within HGI48_RS02505 at 541.346 kb on + strand, within HGI48_RS02505 at 541.347 kb on - strand, within HGI48_RS02505 at 541.385 kb on + strand, within HGI48_RS02505 at 541.505 kb on + strand, within HGI48_RS02505 at 541.505 kb on + strand, within HGI48_RS02505 at 541.506 kb on - strand, within HGI48_RS02505 at 541.506 kb on - strand at 541.506 kb on - strand at 541.506 kb on - strand, within HGI48_RS02505 at 541.580 kb on + strand, within HGI48_RS02505 at 541.581 kb on - strand, within HGI48_RS02505 at 541.597 kb on + strand, within HGI48_RS02505 at 541.598 kb on - strand, within HGI48_RS02505 at 541.598 kb on - strand, within HGI48_RS02505 at 541.617 kb on + strand, within HGI48_RS02505 at 541.617 kb on + strand at 541.617 kb on + strand, within HGI48_RS02505 at 541.618 kb on - strand, within HGI48_RS02505 at 541.729 kb on + strand, within HGI48_RS02505 at 541.730 kb on - strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.832 kb on + strand, within HGI48_RS02505 at 541.833 kb on - strand, within HGI48_RS02505 at 542.013 kb on - strand at 542.130 kb on - strand at 542.163 kb on - strand at 542.297 kb on + strand, within HGI48_RS02510 at 542.297 kb on + strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.298 kb on - strand, within HGI48_RS02510 at 542.360 kb on + strand, within HGI48_RS02510 at 542.360 kb on + strand at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.361 kb on - strand, within HGI48_RS02510 at 542.460 kb on + strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.461 kb on - strand at 542.461 kb on - strand, within HGI48_RS02510 at 542.496 kb on + strand, within HGI48_RS02510 at 542.496 kb on + strand at 542.538 kb on - strand, within HGI48_RS02510 at 542.538 kb on - strand, within HGI48_RS02510 at 542.567 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand, within HGI48_RS02510 at 542.580 kb on + strand at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand, within HGI48_RS02510 at 542.581 kb on - strand at 542.613 kb on + strand, within HGI48_RS02510 at 542.645 kb on - strand, within HGI48_RS02510 at 542.658 kb on - strand, within HGI48_RS02510 at 542.660 kb on - strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand, within HGI48_RS02510 at 542.695 kb on + strand at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand, within HGI48_RS02510 at 542.696 kb on - strand at 542.790 kb on + strand at 542.790 kb on + strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.791 kb on - strand at 542.792 kb on + strand at 542.793 kb on - strand at 542.804 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.828 kb on + strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.829 kb on - strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.832 kb on + strand at 542.833 kb on - strand at 542.833 kb on - strand at 542.845 kb on + strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.846 kb on - strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.849 kb on + strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.850 kb on - strand at 542.861 kb on - strand at 542.941 kb on - strand at 542.955 kb on + strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.956 kb on - strand at 542.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 539,913 + HGI48_RS02500 0.18 -1.1 539,972 + HGI48_RS02500 0.24 -1.8 539,973 - HGI48_RS02500 0.24 +0.0 539,973 - HGI48_RS02500 0.24 -0.1 539,973 - +1.0 540,021 - HGI48_RS02500 0.29 +0.1 540,024 + HGI48_RS02500 0.29 -1.8 540,024 + +0.6 540,024 + +1.0 540,024 + HGI48_RS02500 0.29 +0.9 540,024 + HGI48_RS02500 0.29 -0.5 540,025 - -1.0 540,025 - HGI48_RS02500 0.29 -0.7 540,059 - HGI48_RS02500 0.32 -2.2 540,083 - HGI48_RS02500 0.35 +0.6 540,083 - HGI48_RS02500 0.35 +0.0 540,194 + HGI48_RS02500 0.45 +1.0 540,194 + HGI48_RS02500 0.45 +0.1 540,194 + HGI48_RS02500 0.45 -0.3 540,194 + HGI48_RS02500 0.45 -0.8 540,195 - HGI48_RS02500 0.46 +0.1 540,195 - HGI48_RS02500 0.46 -1.0 540,350 + HGI48_RS02500 0.61 -0.4 540,350 + HGI48_RS02500 0.61 -0.3 540,351 - HGI48_RS02500 0.61 -0.6 540,351 - HGI48_RS02500 0.61 +0.3 540,351 - HGI48_RS02500 0.61 -0.2 540,351 - HGI48_RS02500 0.61 -1.8 540,518 - HGI48_RS02500 0.77 -2.9 540,637 + -0.0 540,638 - HGI48_RS02500 0.89 +1.2 540,638 - HGI48_RS02500 0.89 -0.4 540,749 + +0.6 540,749 + -0.3 540,750 - -1.2 540,763 + -1.4 540,764 - -0.2 540,764 - -0.8 540,764 - -0.8 540,764 - -0.4 540,876 + +2.4 540,877 - +1.3 540,877 - +0.6 540,877 - +1.0 540,877 - -0.4 541,076 + HGI48_RS02505 0.19 -0.2 541,114 + HGI48_RS02505 0.22 +0.8 541,176 + HGI48_RS02505 0.27 -0.8 541,176 + HGI48_RS02505 0.27 -0.3 541,234 + HGI48_RS02505 0.32 -0.4 541,234 + HGI48_RS02505 0.32 -0.4 541,234 + HGI48_RS02505 0.32 +0.3 541,235 - HGI48_RS02505 0.32 -0.1 541,276 + HGI48_RS02505 0.36 -0.4 541,346 + HGI48_RS02505 0.42 -1.6 541,346 + HGI48_RS02505 0.42 -1.0 541,347 - HGI48_RS02505 0.42 -1.4 541,385 + HGI48_RS02505 0.45 -1.0 541,505 + HGI48_RS02505 0.56 -1.4 541,505 + HGI48_RS02505 0.56 -0.1 541,506 - HGI48_RS02505 0.56 -1.6 541,506 - +0.6 541,506 - +1.6 541,506 - HGI48_RS02505 0.56 +0.9 541,580 + HGI48_RS02505 0.62 +0.4 541,581 - HGI48_RS02505 0.62 -2.0 541,597 + HGI48_RS02505 0.64 -1.0 541,598 - HGI48_RS02505 0.64 -1.4 541,598 - HGI48_RS02505 0.64 +0.6 541,617 + HGI48_RS02505 0.66 +2.1 541,617 + +1.6 541,617 + HGI48_RS02505 0.66 +1.1 541,618 - HGI48_RS02505 0.66 -0.8 541,729 + HGI48_RS02505 0.75 -0.2 541,730 - HGI48_RS02505 0.75 -0.5 541,832 + HGI48_RS02505 0.84 -2.8 541,832 + HGI48_RS02505 0.84 -0.5 541,832 + HGI48_RS02505 0.84 +0.6 541,833 - HGI48_RS02505 0.84 +0.1 542,013 - -0.6 542,130 - +1.1 542,163 - +0.6 542,297 + HGI48_RS02510 0.29 -0.0 542,297 + HGI48_RS02510 0.29 -0.2 542,298 - HGI48_RS02510 0.29 -0.8 542,298 - HGI48_RS02510 0.29 -1.2 542,298 - HGI48_RS02510 0.29 -2.8 542,360 + HGI48_RS02510 0.38 -0.2 542,360 + -0.0 542,361 - HGI48_RS02510 0.38 -0.1 542,361 - HGI48_RS02510 0.38 -2.4 542,361 - HGI48_RS02510 0.38 -0.3 542,361 - HGI48_RS02510 0.38 -0.2 542,460 + -0.0 542,461 - HGI48_RS02510 0.53 -0.2 542,461 - -0.0 542,461 - HGI48_RS02510 0.53 +0.6 542,496 + HGI48_RS02510 0.58 +0.6 542,496 + +0.6 542,538 - HGI48_RS02510 0.64 +0.2 542,538 - HGI48_RS02510 0.64 +0.2 542,567 + HGI48_RS02510 0.68 -1.4 542,580 + HGI48_RS02510 0.70 -1.2 542,580 + HGI48_RS02510 0.70 -0.2 542,580 + HGI48_RS02510 0.70 +0.0 542,580 + HGI48_RS02510 0.70 -1.0 542,580 + +1.8 542,581 - HGI48_RS02510 0.70 -1.0 542,581 - HGI48_RS02510 0.70 -1.4 542,581 - +0.6 542,613 + HGI48_RS02510 0.74 +0.3 542,645 - HGI48_RS02510 0.79 -1.0 542,658 - HGI48_RS02510 0.81 +0.6 542,660 - HGI48_RS02510 0.81 -0.4 542,695 + HGI48_RS02510 0.86 -0.2 542,695 + HGI48_RS02510 0.86 -1.4 542,695 + +1.0 542,696 - HGI48_RS02510 0.86 +1.7 542,696 - HGI48_RS02510 0.86 -1.4 542,696 - +1.8 542,790 + +0.4 542,790 + -0.4 542,791 - +1.6 542,791 - -0.8 542,791 - -0.1 542,791 - -0.5 542,791 - -1.4 542,791 - +0.1 542,792 + +0.2 542,793 - +1.6 542,804 + +0.1 542,828 + +0.4 542,828 + -2.0 542,828 + +0.0 542,828 + +0.4 542,829 - +0.3 542,829 - -0.1 542,829 - -1.4 542,829 - -0.1 542,832 + +1.3 542,832 + +0.1 542,832 + -2.0 542,832 + -0.3 542,832 + -2.0 542,832 + -1.0 542,832 + -0.4 542,832 + +1.9 542,832 + -1.8 542,832 + +0.2 542,832 + +1.1 542,833 - +0.8 542,833 - -1.0 542,845 + -2.0 542,846 - +0.5 542,846 - -1.8 542,846 - +0.4 542,849 + +0.1 542,849 + +0.3 542,849 + -1.3 542,849 + +0.2 542,850 - -1.2 542,850 - -1.3 542,850 - -0.2 542,850 - +1.3 542,861 - -0.0 542,941 - -0.2 542,955 + +0.3 542,956 - +0.4 542,956 - +0.6 542,956 - -2.2 542,976 - -1.4
Or see this region's nucleotide sequence