Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02435 and HGI48_RS02440 are separated by 31 nucleotides HGI48_RS02440 and HGI48_RS02445 are separated by 261 nucleotides HGI48_RS02445 and HGI48_RS02450 are separated by 16 nucleotides HGI48_RS02450 and HGI48_RS02455 overlap by 4 nucleotides
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
HGI48_RS02440: HGI48_RS02440 - hypothetical protein, at 529,269 to 529,511
_RS02440
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
HGI48_RS02450: HGI48_RS02450 - ABC transporter substrate-binding protein, at 530,326 to 531,267
_RS02450
HGI48_RS02455: HGI48_RS02455 - iron ABC transporter permease, at 531,264 to 532,262
_RS02455
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 528.811 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand at 528.882 kb on - strand, within HGI48_RS02435 at 528.882 kb on - strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.913 kb on - strand at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand at 529.065 kb on - strand, within HGI48_RS02435 at 529.065 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.148 kb on + strand at 529.157 kb on - strand at 529.238 kb on + strand at 529.239 kb on - strand at 529.239 kb on - strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.270 kb on + strand at 529.271 kb on - strand at 529.281 kb on - strand at 529.281 kb on - strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.537 kb on + strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.550 kb on - strand at 529.550 kb on - strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.710 kb on + strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.714 kb on + strand at 529.715 kb on - strand at 529.804 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.831 kb on + strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.840 kb on + strand at 529.841 kb on - strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.858 kb on + strand at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.876 kb on + strand, within HGI48_RS02445 at 529.991 kb on + strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 530.051 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.189 kb on + strand, within HGI48_RS02445 at 530.260 kb on + strand at 530.274 kb on + strand at 530.274 kb on + strand at 530.282 kb on + strand at 530.282 kb on + strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.283 kb on - strand at 530.387 kb on + strand at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand, within HGI48_RS02450 at 530.585 kb on - strand at 530.645 kb on - strand at 530.693 kb on - strand, within HGI48_RS02450 at 530.693 kb on - strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.727 kb on + strand, within HGI48_RS02450 at 530.728 kb on - strand at 530.728 kb on - strand, within HGI48_RS02450 at 530.768 kb on + strand, within HGI48_RS02450 at 530.768 kb on + strand at 530.768 kb on + strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.769 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.901 kb on - strand, within HGI48_RS02450 at 530.908 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.925 kb on + strand, within HGI48_RS02450 at 530.947 kb on + strand, within HGI48_RS02450 at 530.948 kb on - strand, within HGI48_RS02450 at 531.079 kb on + strand, within HGI48_RS02450 at 531.080 kb on - strand, within HGI48_RS02450 at 531.184 kb on + strand at 531.282 kb on + strand at 531.282 kb on + strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.283 kb on - strand at 531.304 kb on + strand at 531.305 kb on - strand at 531.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 528,811 + HGI48_RS02435 0.64 -0.2 528,881 + HGI48_RS02435 0.69 -0.7 528,881 + HGI48_RS02435 0.69 -1.9 528,881 + -1.0 528,882 - HGI48_RS02435 0.70 +0.8 528,882 - HGI48_RS02435 0.70 -0.0 528,912 + HGI48_RS02435 0.72 +0.6 528,912 + HGI48_RS02435 0.72 -1.2 528,912 + HGI48_RS02435 0.72 -0.2 528,912 + HGI48_RS02435 0.72 -0.9 528,913 - +1.8 529,064 + HGI48_RS02435 0.85 +0.6 529,064 + HGI48_RS02435 0.85 +1.6 529,064 + HGI48_RS02435 0.85 +0.2 529,064 + +2.1 529,065 - HGI48_RS02435 0.85 +0.6 529,065 - HGI48_RS02435 0.85 -0.1 529,072 - HGI48_RS02435 0.86 -0.7 529,072 - HGI48_RS02435 0.86 +1.7 529,091 + HGI48_RS02435 0.87 -0.1 529,091 + HGI48_RS02435 0.87 +1.6 529,092 - HGI48_RS02435 0.88 +0.4 529,092 - HGI48_RS02435 0.88 -2.8 529,092 - HGI48_RS02435 0.88 -0.0 529,148 + -0.8 529,157 - -1.2 529,238 + -0.1 529,239 - +1.1 529,239 - +0.6 529,266 + -2.1 529,266 + -0.1 529,266 + -0.0 529,266 + -0.2 529,266 + -2.0 529,266 + -0.6 529,266 + -0.8 529,266 + -3.0 529,266 + +0.1 529,266 + -0.4 529,266 + +1.0 529,267 - -1.4 529,267 - +1.4 529,267 - +0.4 529,267 - -0.7 529,267 - +1.4 529,267 - -0.4 529,270 + -0.4 529,271 - +0.9 529,281 - -1.0 529,281 - -0.6 529,525 + +0.6 529,525 + -0.0 529,525 + -2.2 529,526 - -0.4 529,526 - +1.4 529,526 - -0.3 529,537 + +0.9 529,538 - +0.1 529,538 - +0.2 529,538 - +0.1 529,550 - -1.2 529,550 - -0.7 529,638 + -0.3 529,638 + -1.0 529,638 + +1.0 529,639 - -2.0 529,639 - +1.0 529,639 - -1.6 529,639 - -0.6 529,710 + +0.6 529,711 - -1.8 529,711 - -1.4 529,711 - -0.8 529,711 - +0.3 529,711 - +0.9 529,714 + -0.8 529,715 - -1.4 529,804 + +1.6 529,813 + +1.6 529,813 + -2.2 529,813 + +0.5 529,813 + +0.2 529,814 - -0.7 529,814 - -1.2 529,814 - -0.8 529,831 + HGI48_RS02445 0.11 -1.8 529,832 - HGI48_RS02445 0.11 -2.2 529,832 - HGI48_RS02445 0.11 -0.9 529,832 - HGI48_RS02445 0.11 -0.4 529,832 - HGI48_RS02445 0.11 -0.9 529,832 - HGI48_RS02445 0.11 -0.3 529,832 - HGI48_RS02445 0.11 +0.3 529,832 - HGI48_RS02445 0.11 -0.4 529,832 - HGI48_RS02445 0.11 -0.2 529,832 - HGI48_RS02445 0.11 -1.8 529,840 + +1.0 529,841 - HGI48_RS02445 0.13 -0.2 529,849 + +1.3 529,849 + -1.0 529,849 + HGI48_RS02445 0.14 -0.2 529,849 + HGI48_RS02445 0.14 -0.2 529,849 + HGI48_RS02445 0.14 -1.0 529,849 + +2.6 529,849 + HGI48_RS02445 0.14 -1.8 529,850 - HGI48_RS02445 0.14 -0.1 529,850 - HGI48_RS02445 0.14 -0.2 529,850 - HGI48_RS02445 0.14 -0.7 529,850 - HGI48_RS02445 0.14 -2.8 529,858 + +0.6 529,867 + HGI48_RS02445 0.18 -1.1 529,867 + HGI48_RS02445 0.18 +0.0 529,867 + HGI48_RS02445 0.18 -1.0 529,868 - HGI48_RS02445 0.18 -0.7 529,868 - HGI48_RS02445 0.18 +0.1 529,876 + HGI48_RS02445 0.19 +0.8 529,991 + HGI48_RS02445 0.41 -0.6 529,992 - HGI48_RS02445 0.41 -2.0 529,992 - HGI48_RS02445 0.41 +1.0 530,051 - HGI48_RS02445 0.52 +0.2 530,054 - +4.1 530,054 - HGI48_RS02445 0.52 -1.2 530,054 - HGI48_RS02445 0.52 +0.0 530,054 - HGI48_RS02445 0.52 -0.5 530,054 - HGI48_RS02445 0.52 +0.3 530,054 - HGI48_RS02445 0.52 -0.3 530,189 + HGI48_RS02445 0.77 -0.8 530,260 + -1.2 530,274 + -0.3 530,274 + +0.8 530,282 + -0.0 530,282 + +0.9 530,283 - -0.0 530,283 - +0.7 530,283 - -1.4 530,387 + +0.3 530,585 - HGI48_RS02450 0.27 +0.7 530,585 - HGI48_RS02450 0.27 -0.2 530,585 - -0.0 530,645 - +1.6 530,693 - HGI48_RS02450 0.39 +0.4 530,693 - HGI48_RS02450 0.39 -0.2 530,727 + HGI48_RS02450 0.43 -0.0 530,727 + HGI48_RS02450 0.43 -0.0 530,727 + HGI48_RS02450 0.43 +0.4 530,728 - -0.0 530,728 - HGI48_RS02450 0.43 -0.9 530,768 + HGI48_RS02450 0.47 -1.8 530,768 + +1.1 530,768 + HGI48_RS02450 0.47 -0.0 530,769 - HGI48_RS02450 0.47 +0.8 530,769 - HGI48_RS02450 0.47 +0.6 530,769 - HGI48_RS02450 0.47 -0.7 530,769 - HGI48_RS02450 0.47 -0.2 530,901 - HGI48_RS02450 0.61 +1.4 530,901 - HGI48_RS02450 0.61 -1.2 530,901 - HGI48_RS02450 0.61 -1.4 530,908 + HGI48_RS02450 0.62 -0.8 530,925 + HGI48_RS02450 0.64 -1.8 530,925 + HGI48_RS02450 0.64 +0.6 530,947 + HGI48_RS02450 0.66 +0.9 530,948 - HGI48_RS02450 0.66 -0.2 531,079 + HGI48_RS02450 0.80 +0.8 531,080 - HGI48_RS02450 0.80 +0.2 531,184 + +0.2 531,282 + -0.5 531,282 + -0.2 531,283 - +0.4 531,283 - -1.2 531,283 - -0.0 531,283 - -0.4 531,304 + +0.6 531,305 - -2.2 531,305 - -0.8
Or see this region's nucleotide sequence