Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02425 and HGI48_RS02430 are separated by 389 nucleotides HGI48_RS02430 and HGI48_RS02435 are separated by 405 nucleotides
HGI48_RS02425: HGI48_RS02425 - SDR family oxidoreductase, at 524,790 to 525,554
_RS02425
HGI48_RS02430: HGI48_RS02430 - Tar ligand binding domain-containing protein, at 525,944 to 527,662
_RS02430
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 525.228 kb on - strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.237 kb on + strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.238 kb on - strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.267 kb on + strand, within HGI48_RS02425 at 525.268 kb on - strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.366 kb on + strand, within HGI48_RS02425 at 525.498 kb on + strand at 525.557 kb on - strand at 525.578 kb on + strand at 525.579 kb on - strand at 525.579 kb on - strand at 525.582 kb on + strand at 525.582 kb on + strand at 525.651 kb on - strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.655 kb on + strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.668 kb on + strand at 525.668 kb on + strand at 525.688 kb on - strand at 525.848 kb on + strand at 525.853 kb on + strand at 525.906 kb on - strand at 525.918 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.949 kb on + strand at 525.950 kb on - strand at 525.950 kb on - strand at 526.105 kb on + strand at 526.105 kb on + strand at 526.106 kb on - strand at 526.151 kb on - strand at 526.151 kb on - strand, within HGI48_RS02430 at 526.308 kb on + strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.309 kb on - strand, within HGI48_RS02430 at 526.355 kb on + strand, within HGI48_RS02430 at 526.365 kb on - strand at 526.365 kb on - strand, within HGI48_RS02430 at 526.365 kb on - strand, within HGI48_RS02430 at 526.372 kb on + strand, within HGI48_RS02430 at 526.373 kb on - strand, within HGI48_RS02430 at 526.454 kb on - strand at 526.469 kb on + strand, within HGI48_RS02430 at 526.469 kb on + strand at 526.469 kb on + strand at 526.470 kb on - strand, within HGI48_RS02430 at 526.470 kb on - strand, within HGI48_RS02430 at 526.559 kb on + strand, within HGI48_RS02430 at 526.559 kb on + strand at 526.559 kb on + strand, within HGI48_RS02430 at 526.561 kb on + strand, within HGI48_RS02430 at 526.561 kb on + strand at 526.561 kb on + strand, within HGI48_RS02430 at 526.609 kb on + strand, within HGI48_RS02430 at 526.610 kb on - strand, within HGI48_RS02430 at 526.610 kb on - strand at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.613 kb on + strand, within HGI48_RS02430 at 526.614 kb on - strand, within HGI48_RS02430 at 526.745 kb on + strand at 526.745 kb on + strand, within HGI48_RS02430 at 526.745 kb on + strand, within HGI48_RS02430 at 526.745 kb on + strand, within HGI48_RS02430 at 526.746 kb on - strand, within HGI48_RS02430 at 526.746 kb on - strand at 526.746 kb on - strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.814 kb on + strand, within HGI48_RS02430 at 526.815 kb on - strand, within HGI48_RS02430 at 527.232 kb on + strand at 527.232 kb on + strand, within HGI48_RS02430 at 527.232 kb on + strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand at 527.420 kb on - strand, within HGI48_RS02430 at 527.420 kb on - strand, within HGI48_RS02430 at 527.696 kb on + strand at 527.702 kb on + strand at 527.702 kb on + strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.747 kb on - strand at 527.780 kb on + strand at 527.781 kb on - strand at 527.781 kb on - strand at 527.815 kb on - strand at 527.846 kb on + strand at 527.847 kb on - strand at 527.847 kb on - strand at 527.848 kb on + strand at 527.849 kb on - strand at 527.851 kb on + strand at 527.851 kb on + strand at 527.852 kb on - strand at 527.862 kb on + strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.958 kb on + strand at 527.959 kb on - strand at 527.959 kb on - strand at 528.092 kb on - strand at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.404 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.439 kb on - strand, within HGI48_RS02435 at 528.529 kb on + strand, within HGI48_RS02435 at 528.529 kb on + strand at 528.529 kb on + strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.533 kb on + strand at 528.534 kb on - strand, within HGI48_RS02435 at 528.534 kb on - strand, within HGI48_RS02435
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 525,228 - HGI48_RS02425 0.57 +0.1 525,237 + HGI48_RS02425 0.58 -0.4 525,237 + HGI48_RS02425 0.58 -2.3 525,237 + HGI48_RS02425 0.58 -1.8 525,237 + HGI48_RS02425 0.58 +0.2 525,237 + HGI48_RS02425 0.58 +0.9 525,237 + HGI48_RS02425 0.58 +0.4 525,238 - HGI48_RS02425 0.59 -0.7 525,238 - HGI48_RS02425 0.59 -3.0 525,267 + HGI48_RS02425 0.62 -0.6 525,267 + HGI48_RS02425 0.62 +0.0 525,268 - HGI48_RS02425 0.62 -0.0 525,366 + HGI48_RS02425 0.75 -0.6 525,366 + HGI48_RS02425 0.75 -1.8 525,498 + +0.2 525,557 - +0.1 525,578 + -0.0 525,579 - -0.2 525,579 - -0.8 525,582 + -0.2 525,582 + +0.1 525,651 - +1.0 525,655 + +0.0 525,655 + +0.6 525,655 + -0.2 525,656 - +0.3 525,656 - +0.2 525,656 - -0.5 525,656 - +0.6 525,656 - -0.0 525,668 + +2.4 525,668 + -2.4 525,688 - +1.1 525,848 + +1.1 525,853 + +0.1 525,906 - -1.4 525,918 + -1.4 525,949 + +1.9 525,949 + -0.8 525,949 + +1.1 525,949 + -2.3 525,949 + +0.6 525,950 - +0.6 525,950 - +0.3 526,105 + +1.1 526,105 + -1.8 526,106 - -0.0 526,151 - -1.0 526,151 - HGI48_RS02430 0.12 +2.0 526,308 + HGI48_RS02430 0.21 -1.3 526,309 - HGI48_RS02430 0.21 -2.0 526,309 - HGI48_RS02430 0.21 -0.7 526,355 + HGI48_RS02430 0.24 +0.4 526,365 - +0.6 526,365 - HGI48_RS02430 0.24 -0.4 526,365 - HGI48_RS02430 0.24 -1.0 526,372 + HGI48_RS02430 0.25 -1.3 526,373 - HGI48_RS02430 0.25 -2.8 526,454 - +1.0 526,469 + HGI48_RS02430 0.31 -2.3 526,469 + +2.0 526,469 + +1.9 526,470 - HGI48_RS02430 0.31 -0.9 526,470 - HGI48_RS02430 0.31 -1.4 526,559 + HGI48_RS02430 0.36 -0.9 526,559 + +1.0 526,559 + HGI48_RS02430 0.36 +0.2 526,561 + HGI48_RS02430 0.36 -0.3 526,561 + +1.0 526,561 + HGI48_RS02430 0.36 -0.9 526,609 + HGI48_RS02430 0.39 +0.1 526,610 - HGI48_RS02430 0.39 -1.8 526,610 - +2.1 526,613 + HGI48_RS02430 0.39 +0.2 526,613 + HGI48_RS02430 0.39 -2.1 526,613 + HGI48_RS02430 0.39 +0.2 526,613 + HGI48_RS02430 0.39 -2.0 526,614 - HGI48_RS02430 0.39 +0.3 526,745 + -1.0 526,745 + HGI48_RS02430 0.47 +0.8 526,745 + HGI48_RS02430 0.47 +0.7 526,745 + HGI48_RS02430 0.47 +0.6 526,746 - HGI48_RS02430 0.47 -2.6 526,746 - +0.6 526,746 - HGI48_RS02430 0.47 -0.0 526,814 + HGI48_RS02430 0.51 -0.4 526,814 + HGI48_RS02430 0.51 +0.9 526,814 + HGI48_RS02430 0.51 -0.1 526,815 - HGI48_RS02430 0.51 -0.2 527,232 + +0.6 527,232 + HGI48_RS02430 0.75 +1.6 527,232 + HGI48_RS02430 0.75 -2.8 527,233 - HGI48_RS02430 0.75 -1.0 527,233 - HGI48_RS02430 0.75 -0.7 527,233 - HGI48_RS02430 0.75 -0.0 527,233 - HGI48_RS02430 0.75 -0.9 527,233 - HGI48_RS02430 0.75 -0.2 527,233 - +2.9 527,413 + HGI48_RS02430 0.85 +1.0 527,413 + HGI48_RS02430 0.85 -0.4 527,413 + +0.6 527,420 - HGI48_RS02430 0.86 -1.3 527,420 - HGI48_RS02430 0.86 -0.1 527,696 + +0.1 527,702 + +1.0 527,702 + -1.0 527,703 - -0.1 527,703 - -1.8 527,703 - -0.8 527,747 - +0.0 527,780 + +0.4 527,781 - -0.4 527,781 - +0.2 527,815 - -0.4 527,846 + -0.7 527,847 - +1.3 527,847 - +0.3 527,848 + -0.6 527,849 - -0.1 527,851 + +0.3 527,851 + +0.1 527,852 - -0.5 527,862 + +0.2 527,863 - -0.1 527,863 - -0.6 527,863 - -0.6 527,863 - +0.7 527,863 - -1.8 527,906 + -1.4 527,906 + -1.2 527,906 + -1.1 527,906 + -1.2 527,907 - +0.2 527,907 - +0.6 527,907 - -0.9 527,907 - -0.4 527,921 + -1.0 527,921 + +0.1 527,921 + -1.8 527,921 + -2.2 527,921 + -0.1 527,921 + -1.6 527,921 + +0.0 527,922 - +0.5 527,922 - +0.2 527,922 - +1.1 527,922 - +0.8 527,935 + -0.1 527,935 + -1.8 527,935 + -0.9 527,935 + -2.0 527,935 + -1.6 527,935 + +0.1 527,936 - +1.2 527,936 - +0.1 527,936 - +0.6 527,936 - +0.2 527,936 - +0.1 527,936 - -0.6 527,936 - +0.6 527,936 - -0.2 527,958 + +1.8 527,959 - -0.4 527,959 - +0.6 528,092 - +0.2 528,349 + HGI48_RS02435 0.24 -0.4 528,349 + HGI48_RS02435 0.24 -0.4 528,349 + HGI48_RS02435 0.24 +0.4 528,349 + HGI48_RS02435 0.24 -0.6 528,349 + HGI48_RS02435 0.24 -2.1 528,349 + HGI48_RS02435 0.24 +0.6 528,349 + HGI48_RS02435 0.24 -0.2 528,349 + HGI48_RS02435 0.24 +1.9 528,349 + HGI48_RS02435 0.24 -1.2 528,349 + HGI48_RS02435 0.24 -0.2 528,350 - HGI48_RS02435 0.24 -0.5 528,350 - HGI48_RS02435 0.24 -0.4 528,350 - HGI48_RS02435 0.24 +1.4 528,350 - HGI48_RS02435 0.24 -0.4 528,350 - HGI48_RS02435 0.24 -0.4 528,404 + HGI48_RS02435 0.29 +0.4 528,438 + HGI48_RS02435 0.32 +0.6 528,438 + HGI48_RS02435 0.32 +0.1 528,438 + HGI48_RS02435 0.32 +0.3 528,439 - HGI48_RS02435 0.32 -0.3 528,529 + HGI48_RS02435 0.39 +0.2 528,529 + +2.1 528,529 + HGI48_RS02435 0.39 -1.6 528,530 - HGI48_RS02435 0.39 +0.5 528,530 - HGI48_RS02435 0.39 -2.2 528,530 - HGI48_RS02435 0.39 -1.0 528,533 + -1.0 528,534 - HGI48_RS02435 0.40 -0.3 528,534 - HGI48_RS02435 0.40 +0.2
Or see this region's nucleotide sequence