Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01905

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01900 and HGI48_RS01905 are separated by 411 nucleotidesHGI48_RS01905 and HGI48_RS01910 are separated by 223 nucleotides HGI48_RS01900: HGI48_RS01900 - aspartate carbamoyltransferase, at 420,367 to 421,302 _RS01900 HGI48_RS01905: HGI48_RS01905 - YhcH/YjgK/YiaL family protein, at 421,714 to 422,181 _RS01905 HGI48_RS01910: HGI48_RS01910 - 6-phospho-beta-glucosidase, at 422,405 to 423,841 _RS01910 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 420.747 kb on - strand, within HGI48_RS01900at 420.747 kb on - strand, within HGI48_RS01900at 420.747 kb on - strand, within HGI48_RS01900at 420.747 kb on - strand, within HGI48_RS01900at 420.793 kb on + strand, within HGI48_RS01900at 420.793 kb on + strand, within HGI48_RS01900at 420.794 kb on - strand, within HGI48_RS01900at 420.794 kb on - strand, within HGI48_RS01900at 421.003 kb on + strand, within HGI48_RS01900at 421.003 kb on + strand, within HGI48_RS01900at 421.003 kb on + strand, within HGI48_RS01900at 421.004 kb on - strand, within HGI48_RS01900at 421.004 kb on - strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strandat 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.007 kb on + strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strandat 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.008 kb on - strand, within HGI48_RS01900at 421.284 kb on + strandat 421.284 kb on + strandat 421.284 kb on + strandat 421.284 kb on + strandat 421.284 kb on + strandat 421.284 kb on + strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.285 kb on - strandat 421.286 kb on + strandat 421.286 kb on + strandat 421.287 kb on - strandat 421.514 kb on + strandat 421.516 kb on + strandat 421.517 kb on - strandat 421.517 kb on - strandat 421.665 kb on + strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.666 kb on - strandat 421.694 kb on - strandat 421.697 kb on + strandat 421.698 kb on - strandat 421.754 kb on - strandat 421.754 kb on - strandat 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.786 kb on + strand, within HGI48_RS01905at 421.787 kb on - strandat 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.790 kb on + strand, within HGI48_RS01905at 421.791 kb on - strand, within HGI48_RS01905at 421.791 kb on - strandat 421.791 kb on - strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.800 kb on + strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.801 kb on - strand, within HGI48_RS01905at 421.846 kb on - strand, within HGI48_RS01905at 421.846 kb on - strand, within HGI48_RS01905at 421.907 kb on - strand, within HGI48_RS01905at 421.919 kb on - strand, within HGI48_RS01905at 421.919 kb on - strand, within HGI48_RS01905at 422.099 kb on + strand, within HGI48_RS01905at 422.100 kb on - strand, within HGI48_RS01905at 422.138 kb on + strandat 422.138 kb on + strandat 422.138 kb on + strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.139 kb on - strandat 422.167 kb on - strandat 422.228 kb on - strandat 422.314 kb on + strandat 422.314 kb on + strandat 422.315 kb on - strandat 422.315 kb on - strandat 422.315 kb on - strandat 422.404 kb on + strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.405 kb on - strandat 422.416 kb on - strandat 422.600 kb on + strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.610 kb on - strand, within HGI48_RS01910at 422.680 kb on + strand, within HGI48_RS01910at 422.733 kb on - strand, within HGI48_RS01910at 422.825 kb on + strand, within HGI48_RS01910at 422.895 kb on - strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.912 kb on + strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 422.913 kb on - strand, within HGI48_RS01910at 423.026 kb on + strand, within HGI48_RS01910at 423.027 kb on - strand, within HGI48_RS01910at 423.131 kb on + strand, within HGI48_RS01910at 423.132 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.135 kb on - strand, within HGI48_RS01910at 423.141 kb on - strand, within HGI48_RS01910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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420,747 - HGI48_RS01900 0.41 -0.1
420,747 - HGI48_RS01900 0.41 -1.0
420,747 - HGI48_RS01900 0.41 +1.1
420,747 - HGI48_RS01900 0.41 +0.9
420,793 + HGI48_RS01900 0.46 -2.4
420,793 + HGI48_RS01900 0.46 +0.1
420,794 - HGI48_RS01900 0.46 +0.6
420,794 - HGI48_RS01900 0.46 +0.6
421,003 + HGI48_RS01900 0.68 +0.9
421,003 + HGI48_RS01900 0.68 -0.4
421,003 + HGI48_RS01900 0.68 +0.6
421,004 - HGI48_RS01900 0.68 -0.1
421,004 - HGI48_RS01900 0.68 -0.3
421,007 + HGI48_RS01900 0.68 -0.4
421,007 + +0.6
421,007 + HGI48_RS01900 0.68 -1.4
421,007 + HGI48_RS01900 0.68 -0.3
421,007 + HGI48_RS01900 0.68 -1.9
421,007 + HGI48_RS01900 0.68 -0.1
421,007 + HGI48_RS01900 0.68 +0.5
421,007 + HGI48_RS01900 0.68 -1.7
421,007 + HGI48_RS01900 0.68 -0.6
421,007 + HGI48_RS01900 0.68 +1.3
421,007 + HGI48_RS01900 0.68 +1.4
421,008 - HGI48_RS01900 0.68 -0.7
421,008 - HGI48_RS01900 0.68 -0.4
421,008 - HGI48_RS01900 0.68 -0.8
421,008 - HGI48_RS01900 0.68 -0.0
421,008 - HGI48_RS01900 0.68 -0.3
421,008 - HGI48_RS01900 0.68 -0.2
421,008 - -0.4
421,008 - HGI48_RS01900 0.68 -0.7
421,008 - HGI48_RS01900 0.68 +0.0
421,008 - HGI48_RS01900 0.68 -1.4
421,284 + -1.6
421,284 + -0.1
421,284 + +2.2
421,284 + -0.6
421,284 + +1.2
421,284 + +1.4
421,285 - -1.2
421,285 - -1.0
421,285 - +0.5
421,285 - +0.9
421,285 - -0.1
421,285 - +0.1
421,285 - -0.2
421,285 - -0.8
421,286 + +0.3
421,286 + -1.1
421,287 - -2.0
421,514 + +0.6
421,516 + +0.2
421,517 - +0.1
421,517 - -0.4
421,665 + +1.9
421,666 - -0.4
421,666 - +0.2
421,666 - +0.3
421,666 - +0.6
421,694 - +0.1
421,697 + +0.7
421,698 - -0.1
421,754 - -1.4
421,754 - -0.4
421,786 + HGI48_RS01905 0.15 -0.0
421,786 + HGI48_RS01905 0.15 +0.0
421,786 + HGI48_RS01905 0.15 -1.7
421,786 + HGI48_RS01905 0.15 -0.9
421,786 + HGI48_RS01905 0.15 -0.3
421,787 - +3.4
421,790 + HGI48_RS01905 0.16 +0.0
421,790 + HGI48_RS01905 0.16 -0.2
421,790 + HGI48_RS01905 0.16 +0.1
421,790 + HGI48_RS01905 0.16 -0.4
421,791 - HGI48_RS01905 0.16 -0.4
421,791 - +0.6
421,791 - HGI48_RS01905 0.16 -1.7
421,800 + HGI48_RS01905 0.18 -1.2
421,800 + HGI48_RS01905 0.18 +0.3
421,800 + HGI48_RS01905 0.18 -2.0
421,800 + HGI48_RS01905 0.18 -0.0
421,800 + HGI48_RS01905 0.18 -1.2
421,800 + HGI48_RS01905 0.18 +0.9
421,801 - HGI48_RS01905 0.19 +0.9
421,801 - HGI48_RS01905 0.19 -2.0
421,801 - HGI48_RS01905 0.19 +0.5
421,846 - HGI48_RS01905 0.28 -0.1
421,846 - HGI48_RS01905 0.28 +0.6
421,907 - HGI48_RS01905 0.41 +0.5
421,919 - HGI48_RS01905 0.44 -0.3
421,919 - HGI48_RS01905 0.44 -0.4
422,099 + HGI48_RS01905 0.82 +1.2
422,100 - HGI48_RS01905 0.82 +2.6
422,138 + -1.0
422,138 + +0.2
422,138 + +0.6
422,139 - +0.3
422,139 - -1.0
422,139 - +1.9
422,139 - -0.8
422,139 - -0.1
422,139 - +1.2
422,139 - -0.4
422,139 - -0.8
422,167 - -1.4
422,228 - +0.1
422,314 + +0.7
422,314 + -0.8
422,315 - -0.7
422,315 - -0.0
422,315 - -1.4
422,404 + +0.7
422,405 - -2.0
422,405 - +0.0
422,405 - -1.5
422,405 - -0.6
422,416 - -1.4
422,600 + HGI48_RS01910 0.14 +0.4
422,610 - HGI48_RS01910 0.14 +0.5
422,610 - HGI48_RS01910 0.14 +0.8
422,610 - HGI48_RS01910 0.14 -2.2
422,610 - HGI48_RS01910 0.14 +0.9
422,680 + HGI48_RS01910 0.19 +0.4
422,733 - HGI48_RS01910 0.23 +0.8
422,825 + HGI48_RS01910 0.29 -1.7
422,895 - HGI48_RS01910 0.34 +0.9
422,912 + HGI48_RS01910 0.35 +0.4
422,912 + HGI48_RS01910 0.35 +1.0
422,912 + HGI48_RS01910 0.35 +0.0
422,913 - HGI48_RS01910 0.35 +1.4
422,913 - HGI48_RS01910 0.35 -1.7
422,913 - HGI48_RS01910 0.35 +0.6
423,026 + HGI48_RS01910 0.43 -0.5
423,027 - HGI48_RS01910 0.43 -1.4
423,131 + HGI48_RS01910 0.51 -2.2
423,132 - HGI48_RS01910 0.51 -1.0
423,135 - HGI48_RS01910 0.51 +0.4
423,135 - HGI48_RS01910 0.51 +0.3
423,135 - HGI48_RS01910 0.51 -1.1
423,135 - HGI48_RS01910 0.51 -1.7
423,135 - HGI48_RS01910 0.51 +0.9
423,141 - HGI48_RS01910 0.51 +1.5

Or see this region's nucleotide sequence