Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01390 and HGI48_RS01395 are separated by 31 nucleotides HGI48_RS01395 and HGI48_RS01400 are separated by 13 nucleotides HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides
HGI48_RS01390: HGI48_RS01390 - AaeX family protein, at 311,856 to 312,059
_RS01390
HGI48_RS01395: HGI48_RS01395 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 312,091 to 313,014
_RS01395
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 312.033 kb on + strand, within HGI48_RS01390 at 312.033 kb on + strand, within HGI48_RS01390 at 312.033 kb on + strand, within HGI48_RS01390 at 312.034 kb on - strand, within HGI48_RS01390 at 312.125 kb on + strand at 312.126 kb on - strand at 312.176 kb on - strand at 312.367 kb on + strand, within HGI48_RS01395 at 312.368 kb on - strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.370 kb on + strand, within HGI48_RS01395 at 312.544 kb on - strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand, within HGI48_RS01395 at 312.590 kb on + strand at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.591 kb on - strand, within HGI48_RS01395 at 312.604 kb on + strand, within HGI48_RS01395 at 312.604 kb on + strand, within HGI48_RS01395 at 312.605 kb on - strand, within HGI48_RS01395 at 312.605 kb on - strand, within HGI48_RS01395 at 312.655 kb on + strand, within HGI48_RS01395 at 312.655 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand, within HGI48_RS01395 at 312.667 kb on + strand at 312.668 kb on - strand, within HGI48_RS01395 at 312.668 kb on - strand, within HGI48_RS01395 at 312.670 kb on - strand, within HGI48_RS01395 at 312.779 kb on + strand, within HGI48_RS01395 at 312.949 kb on - strand at 312.949 kb on - strand at 313.082 kb on - strand at 313.158 kb on + strand at 313.256 kb on - strand at 313.360 kb on - strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.376 kb on + strand, within HGI48_RS01400 at 313.377 kb on - strand, within HGI48_RS01400 at 313.377 kb on - strand at 313.584 kb on - strand, within HGI48_RS01400 at 313.605 kb on + strand, within HGI48_RS01400 at 313.605 kb on + strand, within HGI48_RS01400 at 313.606 kb on - strand, within HGI48_RS01400 at 313.606 kb on - strand, within HGI48_RS01400 at 313.673 kb on - strand, within HGI48_RS01400 at 313.690 kb on - strand, within HGI48_RS01400 at 313.768 kb on - strand, within HGI48_RS01400 at 314.043 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.172 kb on + strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.173 kb on - strand at 314.173 kb on - strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.284 kb on + strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.285 kb on - strand, within HGI48_RS01400 at 314.322 kb on + strand, within HGI48_RS01400 at 314.323 kb on - strand at 314.419 kb on + strand, within HGI48_RS01400 at 314.419 kb on + strand at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.420 kb on - strand, within HGI48_RS01400 at 314.488 kb on + strand, within HGI48_RS01400 at 314.562 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.645 kb on + strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.646 kb on - strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.696 kb on + strand, within HGI48_RS01400 at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.874 kb on - strand at 314.874 kb on - strand at 314.956 kb on + strand at 314.957 kb on - strand at 314.986 kb on - strand at 314.997 kb on + strand at 315.245 kb on - strand at 315.292 kb on + strand at 315.292 kb on + strand at 315.293 kb on - strand, within HGI48_RS01405 at 315.293 kb on - strand at 315.297 kb on + strand, within HGI48_RS01405 at 315.297 kb on + strand, within HGI48_RS01405 at 315.298 kb on - strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand at 315.324 kb on + strand at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.328 kb on + strand, within HGI48_RS01405 at 315.462 kb on + strand at 315.462 kb on + strand at 315.462 kb on + strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.506 kb on + strand at 315.507 kb on - strand at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 312,033 + HGI48_RS01390 0.87 -2.4 312,033 + HGI48_RS01390 0.87 -0.2 312,033 + HGI48_RS01390 0.87 -1.0 312,034 - HGI48_RS01390 0.87 +0.4 312,125 + +0.5 312,126 - +0.6 312,176 - +2.4 312,367 + HGI48_RS01395 0.30 -0.1 312,368 - HGI48_RS01395 0.30 -0.9 312,370 + HGI48_RS01395 0.30 +0.3 312,370 + HGI48_RS01395 0.30 -1.2 312,370 + HGI48_RS01395 0.30 +0.3 312,544 - HGI48_RS01395 0.49 -1.6 312,590 + HGI48_RS01395 0.54 -0.4 312,590 + HGI48_RS01395 0.54 -0.4 312,590 + HGI48_RS01395 0.54 -0.0 312,590 + HGI48_RS01395 0.54 -2.2 312,590 + HGI48_RS01395 0.54 +0.2 312,590 + HGI48_RS01395 0.54 -1.0 312,590 + +0.0 312,590 + HGI48_RS01395 0.54 +1.1 312,590 + HGI48_RS01395 0.54 +1.0 312,590 + +0.6 312,591 - HGI48_RS01395 0.54 -0.4 312,591 - HGI48_RS01395 0.54 -0.0 312,591 - HGI48_RS01395 0.54 -0.3 312,591 - HGI48_RS01395 0.54 -1.0 312,591 - HGI48_RS01395 0.54 -1.2 312,591 - HGI48_RS01395 0.54 -1.0 312,591 - HGI48_RS01395 0.54 +1.4 312,591 - HGI48_RS01395 0.54 +1.1 312,591 - HGI48_RS01395 0.54 -0.7 312,604 + HGI48_RS01395 0.56 -0.0 312,604 + HGI48_RS01395 0.56 -1.7 312,605 - HGI48_RS01395 0.56 +0.6 312,605 - HGI48_RS01395 0.56 -0.1 312,655 + HGI48_RS01395 0.61 -2.0 312,655 + HGI48_RS01395 0.61 +0.2 312,667 + HGI48_RS01395 0.62 -0.6 312,667 + HGI48_RS01395 0.62 -1.2 312,667 + HGI48_RS01395 0.62 +0.6 312,667 + HGI48_RS01395 0.62 +0.3 312,667 + +1.4 312,668 - HGI48_RS01395 0.62 +0.4 312,668 - HGI48_RS01395 0.62 -0.2 312,670 - HGI48_RS01395 0.63 +0.6 312,779 + HGI48_RS01395 0.74 -1.4 312,949 - +1.1 312,949 - -0.8 313,082 - -2.5 313,158 + +0.4 313,256 - +3.0 313,360 - HGI48_RS01400 0.17 -0.6 313,376 + HGI48_RS01400 0.18 -2.0 313,376 + HGI48_RS01400 0.18 +0.6 313,376 + HGI48_RS01400 0.18 +0.0 313,377 - HGI48_RS01400 0.18 +0.6 313,377 - +0.6 313,584 - HGI48_RS01400 0.29 +1.0 313,605 + HGI48_RS01400 0.30 -0.0 313,605 + HGI48_RS01400 0.30 -2.1 313,606 - HGI48_RS01400 0.30 +0.2 313,606 - HGI48_RS01400 0.30 -0.6 313,673 - HGI48_RS01400 0.33 +0.5 313,690 - HGI48_RS01400 0.34 -0.2 313,768 - HGI48_RS01400 0.38 -1.0 314,043 + HGI48_RS01400 0.52 -0.4 314,172 + HGI48_RS01400 0.59 +0.6 314,172 + HGI48_RS01400 0.59 +0.3 314,173 - +1.6 314,173 - HGI48_RS01400 0.59 -0.0 314,173 - +0.0 314,173 - HGI48_RS01400 0.59 +0.0 314,284 + HGI48_RS01400 0.64 +0.2 314,284 + HGI48_RS01400 0.64 -1.4 314,284 + HGI48_RS01400 0.64 +0.9 314,285 - HGI48_RS01400 0.64 +0.6 314,285 - HGI48_RS01400 0.64 +0.3 314,285 - HGI48_RS01400 0.64 -0.4 314,285 - HGI48_RS01400 0.64 +0.4 314,285 - HGI48_RS01400 0.64 +0.2 314,322 + HGI48_RS01400 0.66 +0.1 314,323 - +1.0 314,419 + HGI48_RS01400 0.71 -0.1 314,419 + +1.9 314,420 - HGI48_RS01400 0.71 +0.2 314,420 - HGI48_RS01400 0.71 +0.2 314,420 - HGI48_RS01400 0.71 -0.7 314,488 + HGI48_RS01400 0.75 -2.4 314,562 + HGI48_RS01400 0.79 -0.4 314,645 + HGI48_RS01400 0.83 +0.2 314,645 + HGI48_RS01400 0.83 -0.1 314,645 + HGI48_RS01400 0.83 +1.4 314,645 + HGI48_RS01400 0.83 +0.6 314,645 + HGI48_RS01400 0.83 -2.8 314,645 + HGI48_RS01400 0.83 -0.1 314,646 - HGI48_RS01400 0.83 +0.6 314,646 - HGI48_RS01400 0.83 -0.4 314,646 - HGI48_RS01400 0.83 -1.0 314,696 + HGI48_RS01400 0.86 +0.5 314,696 + HGI48_RS01400 0.86 -0.2 314,873 + -0.1 314,873 + -0.5 314,873 + +1.0 314,873 + -0.7 314,874 - -0.2 314,874 - -1.0 314,956 + -1.0 314,957 - -1.7 314,986 - +0.0 314,997 + -0.3 315,245 - +1.2 315,292 + +1.6 315,292 + -1.0 315,293 - HGI48_RS01405 0.62 -0.2 315,293 - +0.6 315,297 + HGI48_RS01405 0.62 -0.1 315,297 + HGI48_RS01405 0.62 -0.1 315,298 - HGI48_RS01405 0.63 +0.6 315,324 + HGI48_RS01405 0.68 +1.2 315,324 + HGI48_RS01405 0.68 -0.0 315,324 + HGI48_RS01405 0.68 +0.3 315,324 + HGI48_RS01405 0.68 +0.0 315,324 + +0.0 315,324 + +2.0 315,324 + HGI48_RS01405 0.68 +0.6 315,324 + HGI48_RS01405 0.68 +1.1 315,325 - HGI48_RS01405 0.68 -0.5 315,325 - HGI48_RS01405 0.68 -1.0 315,325 - HGI48_RS01405 0.68 -0.4 315,325 - +1.0 315,325 - HGI48_RS01405 0.68 -2.7 315,325 - -1.0 315,328 + HGI48_RS01405 0.69 -0.8 315,462 + +1.6 315,462 + -1.2 315,462 + +0.0 315,463 - +0.0 315,463 - -0.4 315,463 - +0.6 315,465 + -1.2 315,465 + -1.4 315,465 + +0.2 315,465 + -1.0 315,465 + +1.1 315,465 + -0.7 315,465 + +1.0 315,469 + -1.1 315,469 + +1.0 315,469 + -0.3 315,469 + +0.6 315,469 + -0.1 315,469 + -0.1 315,469 + -3.0 315,469 + -0.8 315,469 + -0.1 315,469 + -0.2 315,469 + -2.5 315,469 + -2.0 315,470 - -0.0 315,470 - -0.4 315,470 - -1.4 315,470 - -1.4 315,470 - +0.5 315,470 - +0.0 315,470 - -1.0 315,470 - -1.5 315,470 - +0.0 315,470 - -1.2 315,473 + +0.6 315,473 + +0.3 315,473 + -0.6 315,474 - -0.0 315,474 - -0.6 315,474 - +2.2 315,506 + -1.7 315,507 - -0.1 315,535 - +0.2 315,538 - -1.5 315,568 + +0.3 315,568 + -1.4 315,568 + +0.9 315,569 - -1.5 315,569 - -0.4 315,569 - +0.2 315,569 - -0.3 315,569 - -0.2 315,569 - -1.1 315,597 + -1.4 315,598 - -0.4 315,598 - -0.8 315,731 + -0.3 315,731 + +1.0 315,731 + -1.0 315,731 + -1.4 315,731 + -1.0 315,731 + +0.6 315,731 + +0.3 315,731 + +0.8 315,731 + +1.0 315,732 - -1.7 315,732 - -0.2 315,732 - +1.0 315,732 - +0.6 315,732 - -0.0 315,733 + -0.6 315,733 + -0.7 315,733 + -0.6 315,734 - -1.0 315,734 - +0.1 315,761 + +0.6 315,776 + +0.2 315,776 + -1.0 315,777 - -0.7 315,777 - +0.5 315,777 - -0.2 315,777 - +0.4 315,777 - +0.5 315,777 - +1.2 315,779 + +0.2 315,806 + +0.4
Or see this region's nucleotide sequence