Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01035 and HGI48_RS01040 are separated by 16 nucleotides HGI48_RS01040 and HGI48_RS01045 are separated by 135 nucleotides HGI48_RS01045 and HGI48_RS01050 are separated by 9 nucleotides HGI48_RS01050 and HGI48_RS01055 are separated by 106 nucleotides
HGI48_RS01035: HGI48_RS01035 - tRNA-Thr, at 235,835 to 235,910
_RS01035
HGI48_RS01040: HGI48_RS01040 - tRNA-Tyr, at 235,927 to 236,011
_RS01040
HGI48_RS01045: HGI48_RS01045 - tRNA-Gly, at 236,147 to 236,221
_RS01045
HGI48_RS01050: HGI48_RS01050 - tRNA-Thr, at 236,231 to 236,306
_RS01050
HGI48_RS01055: HGI48_RS01055 - elongation factor Tu, at 236,413 to 237,598
_RS01055
Position (kb) 236
237 Strain fitness (log2 ratio) -2
-1
0
1
2 at 235.328 kb on + strand at 235.350 kb on - strand at 235.390 kb on - strand at 235.417 kb on + strand at 235.417 kb on + strand at 235.417 kb on + strand at 235.417 kb on + strand at 235.420 kb on + strand at 235.421 kb on - strand at 235.421 kb on - strand at 235.452 kb on + strand at 235.452 kb on + strand at 235.452 kb on + strand at 235.452 kb on + strand at 235.453 kb on - strand at 235.453 kb on - strand at 235.453 kb on - strand at 235.461 kb on + strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.504 kb on - strand at 235.525 kb on + strand at 235.526 kb on - strand at 235.546 kb on - strand at 235.618 kb on + strand at 235.619 kb on - strand at 235.668 kb on + strand at 235.668 kb on + strand at 235.668 kb on + strand at 235.685 kb on + strand at 235.686 kb on - strand at 235.705 kb on - strand at 235.705 kb on - strand at 236.035 kb on + strand at 236.035 kb on + strand at 236.035 kb on + strand at 236.047 kb on + strand at 236.224 kb on + strand at 236.225 kb on - strand at 236.225 kb on - strand at 236.238 kb on + strand at 236.239 kb on - strand at 236.239 kb on - strand, within HGI48_RS01050 at 236.239 kb on - strand, within HGI48_RS01050 at 236.239 kb on - strand, within HGI48_RS01050 at 236.313 kb on + strand at 236.314 kb on - strand at 236.340 kb on - strand at 236.355 kb on - strand at 236.355 kb on - strand at 236.377 kb on + strand at 236.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 235,328 + +1.0 235,350 - -0.3 235,390 - +0.7 235,417 + -1.5 235,417 + -0.9 235,417 + -0.4 235,417 + +0.1 235,420 + -2.5 235,421 - +1.3 235,421 - -0.3 235,452 + -0.4 235,452 + -0.5 235,452 + -0.9 235,452 + +1.5 235,453 - -0.5 235,453 - -0.6 235,453 - -1.3 235,461 + +0.9 235,462 - -1.7 235,462 - -1.3 235,462 - -0.1 235,504 - +0.1 235,525 + +0.3 235,526 - +1.1 235,546 - -0.9 235,618 + +0.1 235,619 - +0.7 235,668 + -0.3 235,668 + -0.6 235,668 + +0.7 235,685 + -0.5 235,686 - -0.9 235,705 - -1.3 235,705 - -0.3 236,035 + -1.3 236,035 + -1.1 236,035 + +1.2 236,047 + -0.2 236,224 + -1.2 236,225 - -1.2 236,225 - -1.3 236,238 + -0.5 236,239 - +1.1 236,239 - HGI48_RS01050 0.11 -1.3 236,239 - HGI48_RS01050 0.11 -0.3 236,239 - HGI48_RS01050 0.11 -0.9 236,313 + +2.0 236,314 - -1.4 236,340 - -0.3 236,355 - -0.9 236,355 - -1.0 236,377 + -1.5 236,461 - -0.3
Or see this region's nucleotide sequence