Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01015

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01010 and HGI48_RS01015 are separated by 121 nucleotidesHGI48_RS01015 and HGI48_RS01020 are separated by 282 nucleotides HGI48_RS01010: HGI48_RS01010 - 23S ribosomal RNA, at 228,736 to 231,661 _RS01010 HGI48_RS01015: HGI48_RS01015 - 5S ribosomal RNA, at 231,783 to 231,898 _RS01015 HGI48_RS01020: HGI48_RS01020 - UDP-N-acetylmuramate dehydrogenase, at 232,181 to 233,218 _RS01020 Position (kb) 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 230.935 kb on + strand, within HGI48_RS01010at 231.606 kb on + strandat 231.606 kb on + strandat 231.661 kb on + strandat 231.661 kb on + strandat 231.661 kb on + strandat 231.661 kb on + strandat 232.065 kb on + strandat 232.126 kb on + strandat 232.127 kb on - strandat 232.144 kb on + strandat 232.144 kb on + strandat 232.144 kb on + strandat 232.149 kb on + strandat 232.149 kb on + strandat 232.149 kb on + strandat 232.149 kb on + strandat 232.149 kb on + strandat 232.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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230,935 + HGI48_RS01010 0.75 -1.8
231,606 + +0.3
231,606 + -1.3
231,661 + -0.1
231,661 + -0.2
231,661 + -0.8
231,661 + -0.9
232,065 + +1.0
232,126 + -1.9
232,127 - +0.8
232,144 + +3.0
232,144 + +0.2
232,144 + +0.1
232,149 + -0.8
232,149 + -0.9
232,149 + +0.1
232,149 + +0.7
232,149 + +0.0
232,177 + -0.2

Or see this region's nucleotide sequence