Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00775 and HGI48_RS00780 are separated by 56 nucleotides HGI48_RS00780 and HGI48_RS00785 are separated by 226 nucleotides HGI48_RS00785 and HGI48_RS00790 are separated by 99 nucleotides
HGI48_RS00775: HGI48_RS00775 - divergent polysaccharide deacetylase family protein, at 177,488 to 178,408
_RS00775
HGI48_RS00780: HGI48_RS00780 - murein hydrolase activator EnvC, at 178,465 to 179,739
_RS00780
HGI48_RS00785: HGI48_RS00785 - rhodanese-like domain-containing protein, at 179,966 to 180,397
_RS00785
HGI48_RS00790: HGI48_RS00790 - protein-export chaperone SecB, at 180,497 to 180,967
_RS00790
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.669 kb on + strand, within HGI48_RS00775 at 177.687 kb on + strand, within HGI48_RS00775 at 177.904 kb on + strand, within HGI48_RS00775 at 177.979 kb on - strand, within HGI48_RS00775 at 177.979 kb on - strand, within HGI48_RS00775 at 178.423 kb on + strand at 178.423 kb on + strand at 178.424 kb on - strand at 178.432 kb on + strand at 178.451 kb on + strand at 178.452 kb on - strand at 178.452 kb on - strand at 178.474 kb on + strand at 178.474 kb on + strand at 178.523 kb on + strand at 178.524 kb on - strand at 178.622 kb on + strand, within HGI48_RS00780 at 178.628 kb on + strand at 178.677 kb on - strand, within HGI48_RS00780 at 178.832 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand at 178.900 kb on - strand, within HGI48_RS00780 at 178.901 kb on + strand, within HGI48_RS00780 at 178.902 kb on - strand, within HGI48_RS00780 at 178.902 kb on - strand, within HGI48_RS00780 at 178.902 kb on - strand at 179.264 kb on + strand, within HGI48_RS00780 at 179.686 kb on + strand at 179.750 kb on + strand at 179.751 kb on - strand at 179.838 kb on + strand at 179.858 kb on + strand at 179.859 kb on - strand at 179.881 kb on - strand at 179.889 kb on + strand at 179.890 kb on - strand at 179.905 kb on + strand at 179.905 kb on + strand at 179.905 kb on + strand at 179.905 kb on + strand at 179.905 kb on + strand at 179.906 kb on - strand at 179.909 kb on + strand at 179.909 kb on + strand at 179.909 kb on + strand at 179.909 kb on + strand at 179.909 kb on + strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.910 kb on - strand at 179.911 kb on + strand at 179.911 kb on + strand at 179.911 kb on + strand at 179.912 kb on - strand at 179.912 kb on - strand at 179.926 kb on + strand at 179.926 kb on + strand at 179.977 kb on + strand at 179.977 kb on + strand at 179.977 kb on + strand at 180.050 kb on - strand, within HGI48_RS00785 at 180.112 kb on + strand, within HGI48_RS00785 at 180.115 kb on + strand, within HGI48_RS00785 at 180.172 kb on + strand, within HGI48_RS00785 at 180.392 kb on - strand at 180.395 kb on + strand at 180.396 kb on - strand at 180.432 kb on + strand at 180.490 kb on - strand at 180.546 kb on - strand, within HGI48_RS00790 at 180.556 kb on + strand, within HGI48_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 177,550 + +1.4 177,550 + -0.1 177,550 + -2.1 177,550 + +1.4 177,550 + -0.1 177,550 + -2.1 177,551 - +0.1 177,551 - +0.5 177,551 - +1.0 177,551 - +0.7 177,551 - +0.3 177,669 + HGI48_RS00775 0.20 +2.1 177,687 + HGI48_RS00775 0.22 +1.0 177,904 + HGI48_RS00775 0.45 +1.4 177,979 - HGI48_RS00775 0.53 -0.5 177,979 - HGI48_RS00775 0.53 -0.2 178,423 + -1.3 178,423 + -1.3 178,424 - -0.6 178,432 + -0.4 178,451 + -0.0 178,452 - -0.1 178,452 - +0.5 178,474 + +1.3 178,474 + +1.4 178,523 + +0.7 178,524 - -0.5 178,622 + HGI48_RS00780 0.12 -0.5 178,628 + +0.7 178,677 - HGI48_RS00780 0.17 +0.5 178,832 + HGI48_RS00780 0.29 +0.1 178,899 + HGI48_RS00780 0.34 -0.8 178,899 + HGI48_RS00780 0.34 -1.0 178,899 + -0.3 178,900 - HGI48_RS00780 0.34 -1.0 178,901 + HGI48_RS00780 0.34 -1.9 178,902 - HGI48_RS00780 0.34 -1.8 178,902 - HGI48_RS00780 0.34 -1.3 178,902 - +0.7 179,264 + HGI48_RS00780 0.63 -1.3 179,686 + -1.3 179,750 + +2.4 179,751 - +0.3 179,838 + -1.1 179,858 + +1.3 179,859 - -1.3 179,881 - +0.7 179,889 + +0.7 179,890 - -0.7 179,905 + +1.0 179,905 + +0.5 179,905 + +1.3 179,905 + -1.3 179,905 + -1.1 179,906 - -1.9 179,909 + +0.7 179,909 + +1.3 179,909 + -0.5 179,909 + -0.2 179,909 + -1.1 179,910 - -2.2 179,910 - -2.0 179,910 - +0.0 179,910 - +1.1 179,910 - -0.8 179,910 - +0.7 179,910 - -1.5 179,910 - +1.3 179,910 - -2.1 179,911 + +0.9 179,911 + -1.0 179,911 + +0.7 179,912 - -2.8 179,912 - -0.6 179,926 + +1.7 179,926 + +1.3 179,977 + -0.6 179,977 + +1.2 179,977 + -0.3 180,050 - HGI48_RS00785 0.19 -0.6 180,112 + HGI48_RS00785 0.34 -0.5 180,115 + HGI48_RS00785 0.34 -1.3 180,172 + HGI48_RS00785 0.48 +1.0 180,392 - -0.6 180,395 + +0.5 180,396 - -0.3 180,432 + -0.3 180,490 - -0.3 180,546 - HGI48_RS00790 0.10 -2.5 180,556 + HGI48_RS00790 0.13 -0.1
Or see this region's nucleotide sequence