Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00730 and HGI48_RS00735 are separated by 549 nucleotides HGI48_RS00735 and HGI48_RS00740 overlap by 4 nucleotides
HGI48_RS00730: HGI48_RS00730 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 166,636 to 167,913
_RS00730
HGI48_RS00735: HGI48_RS00735 - glycosyltransferase family 4 protein, at 168,463 to 169,587
_RS00735
HGI48_RS00740: HGI48_RS00740 - glycosyltransferase family 9 protein, at 169,584 to 170,690
_RS00740
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1 at 167.927 kb on - strand at 167.927 kb on - strand at 167.927 kb on - strand at 167.927 kb on - strand at 167.951 kb on - strand at 167.951 kb on - strand at 167.953 kb on - strand at 167.957 kb on - strand at 167.957 kb on - strand at 167.957 kb on - strand at 168.042 kb on + strand at 168.084 kb on - strand at 168.124 kb on + strand at 168.136 kb on + strand at 168.161 kb on + strand at 168.189 kb on - strand at 168.190 kb on + strand at 168.224 kb on + strand at 168.225 kb on - strand at 168.228 kb on + strand at 168.228 kb on + strand at 168.228 kb on + strand at 168.229 kb on - strand at 168.245 kb on - strand at 168.370 kb on + strand at 168.371 kb on - strand at 168.388 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.414 kb on + strand at 168.415 kb on - strand at 168.415 kb on - strand at 168.417 kb on + strand at 168.420 kb on - strand at 168.435 kb on + strand at 168.442 kb on + strand at 168.442 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.451 kb on + strand at 168.457 kb on + strand at 168.479 kb on + strand at 168.483 kb on + strand at 168.485 kb on + strand at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand, within HGI48_RS00735 at 168.738 kb on + strand at 168.862 kb on + strand at 168.862 kb on + strand, within HGI48_RS00735 at 168.863 kb on - strand at 169.215 kb on + strand at 169.551 kb on + strand at 169.807 kb on - strand, within HGI48_RS00740 at 169.875 kb on + strand, within HGI48_RS00740 at 169.876 kb on + strand, within HGI48_RS00740 at 169.877 kb on - strand, within HGI48_RS00740 at 169.880 kb on + strand at 169.893 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.928 kb on + strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.929 kb on - strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.988 kb on + strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 169.989 kb on - strand, within HGI48_RS00740 at 170.149 kb on + strand, within HGI48_RS00740 at 170.235 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.237 kb on + strand, within HGI48_RS00740 at 170.273 kb on + strand, within HGI48_RS00740 at 170.417 kb on + strand, within HGI48_RS00740 at 170.436 kb on + strand, within HGI48_RS00740 at 170.486 kb on + strand, within HGI48_RS00740 at 170.487 kb on - strand at 170.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 167,927 - +1.4 167,927 - -0.1 167,927 - +0.1 167,927 - +1.5 167,951 - -1.1 167,951 - -1.3 167,953 - -0.9 167,957 - -0.5 167,957 - -0.5 167,957 - -0.6 168,042 + -0.3 168,084 - +0.5 168,124 + -0.5 168,136 + -1.3 168,161 + +0.4 168,189 - -0.2 168,190 + -0.5 168,224 + -0.3 168,225 - -0.7 168,228 + -1.6 168,228 + +0.5 168,228 + -1.0 168,229 - +0.0 168,245 - +0.6 168,370 + -1.6 168,371 - +0.1 168,388 + +0.8 168,414 + -0.5 168,414 + -0.2 168,414 + +0.8 168,414 + -0.1 168,414 + -1.3 168,414 + +0.1 168,414 + -0.5 168,415 - -0.3 168,415 - -1.9 168,417 + -0.1 168,420 - -1.8 168,435 + -0.2 168,442 + -1.1 168,442 + -1.9 168,451 + -0.9 168,451 + +0.5 168,451 + +0.1 168,451 + -0.3 168,457 + -0.7 168,479 + -0.1 168,483 + -0.6 168,485 + +0.7 168,738 + HGI48_RS00735 0.24 +0.0 168,738 + HGI48_RS00735 0.24 -0.9 168,738 + +0.7 168,862 + +0.7 168,862 + HGI48_RS00735 0.35 -2.1 168,863 - +0.7 169,215 + -0.3 169,551 + +0.7 169,807 - HGI48_RS00740 0.20 +0.3 169,875 + HGI48_RS00740 0.26 +0.2 169,876 + HGI48_RS00740 0.26 -0.9 169,877 - HGI48_RS00740 0.26 -0.5 169,880 + +0.7 169,893 + HGI48_RS00740 0.28 +0.4 169,928 + HGI48_RS00740 0.31 -0.6 169,928 + HGI48_RS00740 0.31 -0.3 169,929 - HGI48_RS00740 0.31 -1.8 169,929 - HGI48_RS00740 0.31 -0.2 169,988 + HGI48_RS00740 0.36 +0.5 169,988 + HGI48_RS00740 0.36 -0.6 169,989 - HGI48_RS00740 0.37 -1.3 169,989 - HGI48_RS00740 0.37 -0.3 170,149 + HGI48_RS00740 0.51 -2.3 170,235 + HGI48_RS00740 0.59 +0.5 170,237 + HGI48_RS00740 0.59 -1.1 170,237 + HGI48_RS00740 0.59 +0.2 170,237 + HGI48_RS00740 0.59 -1.6 170,273 + HGI48_RS00740 0.62 -0.9 170,417 + HGI48_RS00740 0.75 +1.3 170,436 + HGI48_RS00740 0.77 -2.5 170,486 + HGI48_RS00740 0.81 +0.7 170,487 - +0.1 170,495 + +0.7
Or see this region's nucleotide sequence