Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00615 and HGI48_RS00620 overlap by 19 nucleotides HGI48_RS00620 and HGI48_RS00625 are separated by 53 nucleotides HGI48_RS00625 and HGI48_RS00630 are separated by 32 nucleotides
HGI48_RS00615: HGI48_RS00615 - HlyD family efflux transporter periplasmic adaptor subunit, at 146,114 to 147,376
_RS00615
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
HGI48_RS00625: HGI48_RS00625 - M55 family metallopeptidase, at 148,380 to 149,201
_RS00625
HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289
_RS00630
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 146.358 kb on + strand, within HGI48_RS00615 at 146.358 kb on + strand at 146.359 kb on - strand at 146.359 kb on - strand, within HGI48_RS00615 at 146.359 kb on - strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.398 kb on + strand, within HGI48_RS00615 at 146.399 kb on - strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.455 kb on + strand, within HGI48_RS00615 at 146.456 kb on - strand at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.456 kb on - strand, within HGI48_RS00615 at 146.460 kb on + strand, within HGI48_RS00615 at 146.498 kb on - strand at 146.498 kb on - strand, within HGI48_RS00615 at 146.508 kb on + strand, within HGI48_RS00615 at 146.509 kb on - strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.571 kb on + strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.572 kb on - strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.628 kb on + strand, within HGI48_RS00615 at 146.692 kb on + strand, within HGI48_RS00615 at 146.693 kb on - strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.783 kb on + strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.784 kb on - strand, within HGI48_RS00615 at 146.822 kb on - strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.893 kb on + strand, within HGI48_RS00615 at 146.894 kb on - strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.980 kb on + strand, within HGI48_RS00615 at 146.981 kb on - strand at 146.981 kb on - strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.043 kb on + strand, within HGI48_RS00615 at 147.044 kb on - strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.092 kb on + strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.093 kb on - strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.248 kb on + strand, within HGI48_RS00615 at 147.249 kb on - strand at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.249 kb on - strand, within HGI48_RS00615 at 147.353 kb on + strand at 147.354 kb on - strand at 147.354 kb on - strand at 147.363 kb on + strand at 147.364 kb on - strand at 147.404 kb on + strand at 147.405 kb on - strand at 147.405 kb on - strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.419 kb on + strand at 147.420 kb on - strand at 147.420 kb on - strand at 147.451 kb on - strand at 147.579 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.592 kb on - strand, within HGI48_RS00620 at 147.651 kb on - strand, within HGI48_RS00620 at 148.074 kb on + strand at 148.122 kb on + strand, within HGI48_RS00620 at 148.360 kb on + strand at 148.381 kb on + strand at 148.381 kb on + strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.403 kb on - strand at 148.454 kb on - strand at 148.547 kb on - strand, within HGI48_RS00625 at 148.547 kb on - strand, within HGI48_RS00625 at 148.577 kb on + strand, within HGI48_RS00625 at 148.578 kb on - strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand at 148.705 kb on + strand, within HGI48_RS00625 at 148.706 kb on - strand, within HGI48_RS00625 at 148.743 kb on + strand, within HGI48_RS00625 at 148.787 kb on - strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 149.113 kb on - strand, within HGI48_RS00625 at 149.120 kb on - strand at 149.120 kb on - strand at 149.190 kb on - strand at 149.193 kb on + strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 146,358 + HGI48_RS00615 0.19 -0.9 146,358 + +0.1 146,359 - -0.9 146,359 - HGI48_RS00615 0.19 -2.8 146,359 - HGI48_RS00615 0.19 -0.6 146,398 + HGI48_RS00615 0.22 -0.4 146,398 + HGI48_RS00615 0.22 -0.2 146,399 - HGI48_RS00615 0.23 -0.6 146,455 + HGI48_RS00615 0.27 -0.0 146,455 + HGI48_RS00615 0.27 -1.0 146,455 + HGI48_RS00615 0.27 -0.6 146,456 - +0.7 146,456 - HGI48_RS00615 0.27 -1.6 146,456 - HGI48_RS00615 0.27 +0.9 146,456 - HGI48_RS00615 0.27 +0.1 146,460 + HGI48_RS00615 0.27 -0.6 146,498 - -0.9 146,498 - HGI48_RS00615 0.30 +0.3 146,508 + HGI48_RS00615 0.31 +0.2 146,509 - HGI48_RS00615 0.31 +1.3 146,571 + HGI48_RS00615 0.36 -0.1 146,571 + HGI48_RS00615 0.36 -0.3 146,572 - HGI48_RS00615 0.36 +0.2 146,572 - HGI48_RS00615 0.36 +1.4 146,572 - HGI48_RS00615 0.36 +0.2 146,628 + HGI48_RS00615 0.41 +0.1 146,628 + HGI48_RS00615 0.41 -0.1 146,628 + HGI48_RS00615 0.41 -0.5 146,628 + HGI48_RS00615 0.41 -0.2 146,692 + HGI48_RS00615 0.46 -0.3 146,693 - HGI48_RS00615 0.46 -1.0 146,783 + HGI48_RS00615 0.53 -1.2 146,783 + HGI48_RS00615 0.53 +0.3 146,783 + +1.7 146,783 + HGI48_RS00615 0.53 +0.3 146,783 + HGI48_RS00615 0.53 +0.4 146,783 + HGI48_RS00615 0.53 +0.5 146,783 + HGI48_RS00615 0.53 -0.8 146,783 + +0.1 146,783 + HGI48_RS00615 0.53 -1.9 146,783 + HGI48_RS00615 0.53 -0.4 146,783 + HGI48_RS00615 0.53 -0.6 146,783 + HGI48_RS00615 0.53 -1.6 146,784 - HGI48_RS00615 0.53 -0.6 146,784 - HGI48_RS00615 0.53 -0.3 146,784 - HGI48_RS00615 0.53 -1.1 146,784 - HGI48_RS00615 0.53 +0.4 146,784 - HGI48_RS00615 0.53 -1.1 146,784 - HGI48_RS00615 0.53 -1.6 146,784 - HGI48_RS00615 0.53 -1.3 146,784 - HGI48_RS00615 0.53 +0.1 146,784 - HGI48_RS00615 0.53 +0.4 146,784 - HGI48_RS00615 0.53 -1.5 146,822 - HGI48_RS00615 0.56 -1.6 146,893 + HGI48_RS00615 0.62 +0.7 146,893 + HGI48_RS00615 0.62 +0.1 146,894 - HGI48_RS00615 0.62 +0.3 146,980 + HGI48_RS00615 0.69 -1.3 146,980 + HGI48_RS00615 0.69 +0.1 146,981 - +1.7 146,981 - HGI48_RS00615 0.69 -0.5 147,043 + HGI48_RS00615 0.74 -2.1 147,043 + HGI48_RS00615 0.74 +0.3 147,044 - HGI48_RS00615 0.74 -0.3 147,092 + HGI48_RS00615 0.77 -0.1 147,092 + +0.7 147,092 + HGI48_RS00615 0.77 -0.3 147,092 + HGI48_RS00615 0.77 +0.7 147,092 + HGI48_RS00615 0.77 -0.5 147,092 + HGI48_RS00615 0.77 -0.9 147,092 + HGI48_RS00615 0.77 +0.3 147,092 + HGI48_RS00615 0.77 +0.9 147,092 + HGI48_RS00615 0.77 -0.1 147,092 + HGI48_RS00615 0.77 +0.4 147,092 + HGI48_RS00615 0.77 -0.7 147,093 - HGI48_RS00615 0.78 +0.7 147,093 - HGI48_RS00615 0.78 +0.2 147,093 - HGI48_RS00615 0.78 -1.9 147,093 - HGI48_RS00615 0.78 -1.5 147,093 - HGI48_RS00615 0.78 -0.8 147,093 - HGI48_RS00615 0.78 +0.8 147,093 - HGI48_RS00615 0.78 -0.8 147,248 + HGI48_RS00615 0.90 -1.2 147,248 + HGI48_RS00615 0.90 -0.3 147,248 + HGI48_RS00615 0.90 +1.4 147,248 + HGI48_RS00615 0.90 -0.4 147,249 - -0.9 147,249 - HGI48_RS00615 0.90 -0.2 147,249 - HGI48_RS00615 0.90 -0.5 147,249 - HGI48_RS00615 0.90 -1.9 147,249 - HGI48_RS00615 0.90 -2.1 147,353 + +1.3 147,354 - -1.9 147,354 - +1.5 147,363 + +0.4 147,364 - -1.6 147,404 + +1.3 147,405 - +0.7 147,405 - +0.7 147,419 + -0.7 147,419 + +0.4 147,419 + -0.2 147,419 + -1.4 147,420 - +0.1 147,420 - +0.7 147,451 - +1.5 147,579 - HGI48_RS00620 0.23 -0.7 147,592 - HGI48_RS00620 0.24 +1.0 147,592 - HGI48_RS00620 0.24 -1.5 147,651 - HGI48_RS00620 0.30 -0.1 148,074 + +1.3 148,122 + HGI48_RS00620 0.79 -0.3 148,360 + -0.7 148,381 + -1.6 148,381 + +0.3 148,382 - +0.0 148,382 - -2.3 148,382 - +0.7 148,403 - +0.4 148,454 - -0.2 148,547 - HGI48_RS00625 0.20 +0.1 148,547 - HGI48_RS00625 0.20 -1.6 148,577 + HGI48_RS00625 0.24 -0.6 148,578 - HGI48_RS00625 0.24 +1.7 148,687 + HGI48_RS00625 0.37 -0.5 148,687 + HGI48_RS00625 0.37 +1.1 148,687 + HGI48_RS00625 0.37 -0.4 148,687 + HGI48_RS00625 0.37 -1.8 148,687 + HGI48_RS00625 0.37 -0.3 148,688 - HGI48_RS00625 0.37 -1.1 148,688 - HGI48_RS00625 0.37 +0.3 148,688 - +1.4 148,705 + HGI48_RS00625 0.40 -0.8 148,706 - HGI48_RS00625 0.40 -0.5 148,743 + HGI48_RS00625 0.44 +0.5 148,787 - HGI48_RS00625 0.50 -0.1 148,790 + HGI48_RS00625 0.50 -0.3 148,790 + HGI48_RS00625 0.50 +0.3 148,790 + HGI48_RS00625 0.50 +0.1 148,791 - HGI48_RS00625 0.50 +0.5 148,791 - HGI48_RS00625 0.50 -0.2 149,113 - HGI48_RS00625 0.89 -0.3 149,120 - +0.1 149,120 - -1.1 149,190 - -0.3 149,193 + -1.1 149,194 - +0.3 149,194 - +0.1 149,194 - -1.3 149,194 - +1.3 149,194 - -1.4 149,194 - +0.2
Or see this region's nucleotide sequence