Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00590 and HGI48_RS00595 are separated by 129 nucleotides HGI48_RS00595 and HGI48_RS00600 are separated by 90 nucleotides HGI48_RS00600 and HGI48_RS00605 overlap by 8 nucleotides
HGI48_RS00590: HGI48_RS00590 - hypothetical protein, at 141,299 to 141,736
_RS00590
HGI48_RS00595: HGI48_RS00595 - hypothetical protein, at 141,866 to 142,630
_RS00595
HGI48_RS00600: HGI48_RS00600 - ABC transporter ATP-binding protein, at 142,721 to 143,434
_RS00600
HGI48_RS00605: HGI48_RS00605 - ABC transporter permease, at 143,427 to 144,647
_RS00605
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.734 kb on + strand at 141.734 kb on + strand at 141.734 kb on + strand at 141.734 kb on + strand at 141.735 kb on - strand at 141.735 kb on - strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.810 kb on - strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.811 kb on + strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.812 kb on - strand at 141.848 kb on + strand at 141.851 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.877 kb on + strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.878 kb on - strand at 141.881 kb on - strand at 141.903 kb on - strand at 141.903 kb on - strand at 141.962 kb on - strand, within HGI48_RS00595 at 141.962 kb on - strand, within HGI48_RS00595 at 141.991 kb on + strand, within HGI48_RS00595 at 142.133 kb on + strand, within HGI48_RS00595 at 142.135 kb on + strand, within HGI48_RS00595 at 142.135 kb on + strand, within HGI48_RS00595 at 142.136 kb on - strand, within HGI48_RS00595 at 142.136 kb on - strand, within HGI48_RS00595 at 142.154 kb on + strand, within HGI48_RS00595 at 142.155 kb on - strand, within HGI48_RS00595 at 142.155 kb on - strand, within HGI48_RS00595 at 142.232 kb on - strand, within HGI48_RS00595 at 142.241 kb on - strand, within HGI48_RS00595 at 142.286 kb on + strand at 142.286 kb on + strand, within HGI48_RS00595 at 142.286 kb on + strand, within HGI48_RS00595 at 142.287 kb on - strand, within HGI48_RS00595 at 142.287 kb on - strand, within HGI48_RS00595 at 142.306 kb on + strand, within HGI48_RS00595 at 142.343 kb on + strand, within HGI48_RS00595 at 142.343 kb on + strand at 142.344 kb on - strand at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.344 kb on - strand, within HGI48_RS00595 at 142.397 kb on + strand, within HGI48_RS00595 at 142.397 kb on + strand at 142.398 kb on - strand, within HGI48_RS00595 at 142.398 kb on - strand, within HGI48_RS00595 at 142.426 kb on + strand, within HGI48_RS00595 at 142.426 kb on + strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.452 kb on - strand, within HGI48_RS00595 at 142.496 kb on + strand, within HGI48_RS00595 at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.689 kb on + strand at 142.690 kb on - strand at 142.755 kb on + strand at 142.756 kb on - strand at 142.756 kb on - strand at 142.803 kb on + strand, within HGI48_RS00600 at 142.815 kb on + strand, within HGI48_RS00600 at 142.844 kb on - strand, within HGI48_RS00600 at 142.891 kb on + strand, within HGI48_RS00600 at 143.085 kb on - strand, within HGI48_RS00600 at 143.092 kb on + strand at 143.092 kb on + strand, within HGI48_RS00600 at 143.093 kb on - strand at 143.296 kb on + strand, within HGI48_RS00600 at 143.297 kb on - strand, within HGI48_RS00600 at 143.336 kb on - strand, within HGI48_RS00600 at 143.344 kb on - strand, within HGI48_RS00600 at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.378 kb on - strand at 143.413 kb on - strand at 143.413 kb on - strand at 143.533 kb on + strand at 143.533 kb on + strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.538 kb on - strand at 143.538 kb on - strand at 143.611 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.622 kb on - strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.798 kb on + strand at 143.799 kb on - strand, within HGI48_RS00605 at 143.816 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.851 kb on + strand, within HGI48_RS00605 at 143.852 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 144.107 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.292 kb on + strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 141,734 + -0.6 141,734 + -0.5 141,734 + -0.7 141,734 + +0.7 141,735 - -0.6 141,735 - +0.5 141,809 + -0.3 141,809 + +1.9 141,809 + -0.5 141,809 + +0.2 141,809 + -0.3 141,809 + -0.5 141,810 - -1.1 141,810 - -0.5 141,810 - -0.5 141,810 - -0.4 141,810 - -3.5 141,810 - -0.6 141,811 + +0.3 141,811 + +1.2 141,811 + -2.6 141,811 + -1.9 141,812 - -1.1 141,812 - -1.9 141,812 - -0.6 141,812 - +0.1 141,812 - +0.7 141,812 - +0.7 141,812 - -1.3 141,812 - -2.3 141,812 - +0.7 141,812 - -2.1 141,848 + +1.4 141,851 + -1.9 141,877 + -0.9 141,877 + -0.1 141,877 + -0.3 141,877 + -0.1 141,877 + -1.1 141,878 - -1.2 141,878 - +1.4 141,878 - +0.3 141,878 - -0.3 141,878 - +1.0 141,878 - +0.3 141,881 - +1.0 141,903 - -0.7 141,903 - +0.3 141,962 - HGI48_RS00595 0.13 -1.1 141,962 - HGI48_RS00595 0.13 +1.2 141,991 + HGI48_RS00595 0.16 -0.2 142,133 + HGI48_RS00595 0.35 -1.1 142,135 + HGI48_RS00595 0.35 +0.4 142,135 + HGI48_RS00595 0.35 +0.1 142,136 - HGI48_RS00595 0.35 -0.3 142,136 - HGI48_RS00595 0.35 -0.7 142,154 + HGI48_RS00595 0.38 -0.6 142,155 - HGI48_RS00595 0.38 -0.1 142,155 - HGI48_RS00595 0.38 -0.9 142,232 - HGI48_RS00595 0.48 -0.2 142,241 - HGI48_RS00595 0.49 +0.3 142,286 + -0.9 142,286 + HGI48_RS00595 0.55 -0.1 142,286 + HGI48_RS00595 0.55 -0.7 142,287 - HGI48_RS00595 0.55 +0.2 142,287 - HGI48_RS00595 0.55 -0.1 142,306 + HGI48_RS00595 0.58 -0.4 142,343 + HGI48_RS00595 0.62 +0.3 142,343 + +1.7 142,344 - +0.7 142,344 - HGI48_RS00595 0.62 -0.5 142,344 - -0.9 142,344 - HGI48_RS00595 0.62 -0.3 142,344 - HGI48_RS00595 0.62 -0.1 142,344 - HGI48_RS00595 0.62 -0.1 142,344 - HGI48_RS00595 0.62 +0.1 142,397 + HGI48_RS00595 0.69 +0.0 142,397 + +3.0 142,398 - HGI48_RS00595 0.70 +0.7 142,398 - HGI48_RS00595 0.70 +0.7 142,426 + HGI48_RS00595 0.73 -0.6 142,426 + HGI48_RS00595 0.73 +0.7 142,427 - HGI48_RS00595 0.73 +0.7 142,427 - HGI48_RS00595 0.73 +0.5 142,427 - HGI48_RS00595 0.73 +0.9 142,430 + HGI48_RS00595 0.74 +0.6 142,430 + HGI48_RS00595 0.74 +0.3 142,430 + HGI48_RS00595 0.74 -0.7 142,431 - HGI48_RS00595 0.74 -0.8 142,431 - HGI48_RS00595 0.74 +0.1 142,452 - HGI48_RS00595 0.77 -0.9 142,496 + HGI48_RS00595 0.82 -0.1 142,674 + -0.9 142,674 + -1.3 142,674 + -0.3 142,674 + +0.1 142,674 + +0.7 142,675 - +0.3 142,675 - -0.2 142,675 - -0.1 142,675 - +0.1 142,675 - +0.1 142,675 - -0.9 142,678 + +0.2 142,678 + +0.9 142,678 + -0.3 142,678 + +1.5 142,679 - -0.9 142,679 - +0.7 142,679 - -0.9 142,689 + +1.0 142,690 - +0.4 142,755 + -0.6 142,756 - -0.1 142,756 - -0.9 142,803 + HGI48_RS00600 0.11 -0.1 142,815 + HGI48_RS00600 0.13 -1.6 142,844 - HGI48_RS00600 0.17 -0.8 142,891 + HGI48_RS00600 0.24 -1.9 143,085 - HGI48_RS00600 0.51 -0.3 143,092 + -0.9 143,092 + HGI48_RS00600 0.52 -2.3 143,093 - +0.1 143,296 + HGI48_RS00600 0.81 -1.2 143,297 - HGI48_RS00600 0.81 -0.1 143,336 - HGI48_RS00600 0.86 +0.4 143,344 - HGI48_RS00600 0.87 -0.4 143,377 + -0.3 143,377 + -2.3 143,377 + -0.2 143,377 + -0.9 143,378 - -0.9 143,413 - +1.4 143,413 - -0.3 143,533 + +0.3 143,533 + +0.9 143,534 - -0.8 143,534 - -2.1 143,534 - +0.7 143,534 - -0.9 143,534 - -0.7 143,537 + -0.2 143,537 + -1.3 143,537 + +0.8 143,537 + +0.7 143,537 + -0.1 143,538 - +1.3 143,538 - +0.9 143,611 + HGI48_RS00605 0.15 +0.7 143,621 + HGI48_RS00605 0.16 +0.7 143,621 + HGI48_RS00605 0.16 -0.4 143,621 + HGI48_RS00605 0.16 -1.1 143,621 + HGI48_RS00605 0.16 -0.3 143,621 + HGI48_RS00605 0.16 -0.1 143,621 + HGI48_RS00605 0.16 -0.4 143,622 - HGI48_RS00605 0.16 +1.0 143,779 + HGI48_RS00605 0.29 -2.3 143,779 + HGI48_RS00605 0.29 -0.2 143,780 - HGI48_RS00605 0.29 +0.7 143,780 - HGI48_RS00605 0.29 +1.1 143,798 + +1.7 143,799 - HGI48_RS00605 0.30 +0.5 143,816 + HGI48_RS00605 0.32 -1.9 143,845 + HGI48_RS00605 0.34 -1.9 143,845 + HGI48_RS00605 0.34 -0.3 143,846 - HGI48_RS00605 0.34 -1.3 143,846 - HGI48_RS00605 0.34 -1.6 143,851 + HGI48_RS00605 0.35 -0.8 143,852 - HGI48_RS00605 0.35 -0.4 143,878 - HGI48_RS00605 0.37 -0.4 143,878 - +1.4 143,878 - HGI48_RS00605 0.37 -1.6 143,878 - +0.1 143,878 - HGI48_RS00605 0.37 -0.4 144,107 + HGI48_RS00605 0.56 +0.4 144,115 + HGI48_RS00605 0.56 +0.2 144,115 + HGI48_RS00605 0.56 -1.6 144,115 + HGI48_RS00605 0.56 -0.3 144,115 + HGI48_RS00605 0.56 -2.4 144,115 + HGI48_RS00605 0.56 -3.0 144,115 + HGI48_RS00605 0.56 +0.3 144,176 - HGI48_RS00605 0.61 -0.5 144,176 - HGI48_RS00605 0.61 +0.1 144,176 - HGI48_RS00605 0.61 +0.5 144,176 - HGI48_RS00605 0.61 -1.4 144,292 + HGI48_RS00605 0.71 -0.5 144,293 - HGI48_RS00605 0.71 -0.5 144,293 - HGI48_RS00605 0.71 -1.3 144,293 - HGI48_RS00605 0.71 +1.0 144,293 - HGI48_RS00605 0.71 +0.7 144,371 - HGI48_RS00605 0.77 -0.4 144,371 - HGI48_RS00605 0.77 -0.1 144,371 - HGI48_RS00605 0.77 +0.7
Or see this region's nucleotide sequence