Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00345 and HGI48_RS00350 overlap by 6 nucleotides HGI48_RS00350 and HGI48_RS00355 are separated by 119 nucleotides
HGI48_RS00345: HGI48_RS00345 - nickel/cobalt efflux protein RcnA, at 88,219 to 89,160
_RS00345
HGI48_RS00350: HGI48_RS00350 - hypothetical protein, at 89,155 to 89,355
_RS00350
HGI48_RS00355: HGI48_RS00355 - argininosuccinate synthase, at 89,475 to 90,824
_RS00355
Position (kb) 89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.175 kb on + strand at 88.175 kb on + strand at 88.176 kb on - strand at 88.214 kb on + strand at 88.214 kb on + strand at 88.215 kb on - strand at 88.215 kb on - strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.218 kb on + strand at 88.219 kb on - strand at 88.219 kb on - strand at 88.219 kb on - strand at 88.219 kb on - strand at 88.219 kb on - strand at 88.219 kb on - strand at 88.272 kb on + strand at 88.347 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.450 kb on + strand, within HGI48_RS00345 at 88.451 kb on - strand, within HGI48_RS00345 at 88.451 kb on - strand, within HGI48_RS00345 at 88.467 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.587 kb on + strand, within HGI48_RS00345 at 88.588 kb on - strand, within HGI48_RS00345 at 88.723 kb on - strand, within HGI48_RS00345 at 88.781 kb on - strand, within HGI48_RS00345 at 88.944 kb on + strand, within HGI48_RS00345 at 88.945 kb on - strand at 88.945 kb on - strand, within HGI48_RS00345 at 89.086 kb on + strand at 89.086 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.122 kb on + strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.123 kb on - strand at 89.124 kb on + strand at 89.124 kb on + strand at 89.125 kb on - strand at 89.125 kb on - strand at 89.159 kb on - strand at 89.435 kb on + strand at 89.435 kb on + strand at 89.436 kb on - strand at 89.442 kb on - strand at 89.467 kb on + strand at 89.468 kb on - strand at 89.468 kb on - strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.470 kb on + strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.471 kb on - strand at 89.474 kb on + strand at 89.474 kb on + strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.475 kb on - strand at 89.543 kb on + strand at 89.589 kb on + strand at 89.590 kb on - strand at 89.590 kb on - strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.595 kb on + strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.596 kb on - strand at 89.631 kb on + strand, within HGI48_RS00355 at 89.631 kb on + strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand, within HGI48_RS00355 at 89.632 kb on - strand at 89.632 kb on - strand, within HGI48_RS00355 at 89.696 kb on + strand, within HGI48_RS00355 at 89.748 kb on - strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.769 kb on + strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.770 kb on - strand, within HGI48_RS00355 at 89.846 kb on + strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.847 kb on - strand, within HGI48_RS00355 at 89.868 kb on + strand, within HGI48_RS00355 at 89.869 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.935 kb on - strand, within HGI48_RS00355 at 89.999 kb on + strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.000 kb on - strand, within HGI48_RS00355 at 90.021 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand, within HGI48_RS00355 at 90.045 kb on + strand at 90.045 kb on + strand, within HGI48_RS00355 at 90.046 kb on - strand at 90.046 kb on - strand, within HGI48_RS00355 at 90.046 kb on - strand, within HGI48_RS00355 at 90.051 kb on - strand, within HGI48_RS00355 at 90.125 kb on + strand, within HGI48_RS00355 at 90.144 kb on - strand, within HGI48_RS00355 at 90.266 kb on + strand, within HGI48_RS00355 at 90.267 kb on - strand, within HGI48_RS00355 at 90.320 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.348 kb on + strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355 at 90.349 kb on - strand, within HGI48_RS00355
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 88,175 + -1.3 88,175 + -0.1 88,176 - +0.3 88,214 + +1.3 88,214 + -0.9 88,215 - -0.3 88,215 - -0.4 88,218 + -0.2 88,218 + +1.5 88,218 + +1.3 88,218 + +0.1 88,218 + +1.0 88,218 + +0.0 88,218 + -0.9 88,219 - -1.7 88,219 - -1.6 88,219 - -0.3 88,219 - +0.2 88,219 - +0.2 88,219 - +0.1 88,272 + +0.1 88,347 + HGI48_RS00345 0.14 -0.7 88,450 + HGI48_RS00345 0.25 -1.3 88,450 + HGI48_RS00345 0.25 -0.3 88,450 + HGI48_RS00345 0.25 -1.6 88,450 + HGI48_RS00345 0.25 -0.9 88,450 + HGI48_RS00345 0.25 -0.6 88,450 + HGI48_RS00345 0.25 -0.3 88,451 - HGI48_RS00345 0.25 -1.6 88,451 - HGI48_RS00345 0.25 -2.5 88,467 + HGI48_RS00345 0.26 -0.3 88,587 + HGI48_RS00345 0.39 +0.7 88,587 + HGI48_RS00345 0.39 +0.2 88,587 + HGI48_RS00345 0.39 +0.1 88,588 - HGI48_RS00345 0.39 +1.3 88,723 - HGI48_RS00345 0.54 +0.0 88,781 - HGI48_RS00345 0.60 +0.0 88,944 + HGI48_RS00345 0.77 +0.7 88,945 - +1.7 88,945 - HGI48_RS00345 0.77 +0.7 89,086 + -0.2 89,086 + +0.1 89,122 + +1.9 89,122 + +0.9 89,122 + -1.6 89,122 + +0.5 89,122 + -0.9 89,122 + +0.0 89,122 + -0.5 89,122 + +0.3 89,122 + +0.4 89,122 + +1.4 89,122 + -1.9 89,122 + -0.4 89,122 + -0.6 89,122 + -0.1 89,122 + +0.5 89,122 + -0.5 89,123 - -0.9 89,123 - -0.3 89,123 - -1.2 89,123 - -2.9 89,123 - -1.3 89,123 - +1.3 89,123 - -1.6 89,124 + -0.3 89,124 + -1.3 89,125 - -1.7 89,125 - -0.8 89,159 - -1.9 89,435 + -0.9 89,435 + -0.9 89,436 - +0.7 89,442 - -0.4 89,467 + -0.1 89,468 - +0.1 89,468 - -0.2 89,470 + +1.3 89,470 + -1.5 89,470 + -1.1 89,470 + -1.6 89,470 + +0.4 89,470 + +0.4 89,470 + -1.3 89,471 - +0.9 89,471 - -0.9 89,471 - -0.3 89,471 - -0.4 89,471 - -0.5 89,471 - +0.4 89,471 - -0.7 89,474 + +1.1 89,474 + +0.1 89,475 - -1.8 89,475 - +0.8 89,475 - +0.1 89,475 - -0.3 89,475 - -2.8 89,475 - -0.6 89,475 - +0.7 89,475 - +0.9 89,475 - +0.3 89,543 + -0.1 89,589 + -0.6 89,590 - -0.1 89,590 - -1.1 89,595 + +0.4 89,595 + +0.0 89,595 + -0.3 89,595 + +0.0 89,595 + -1.3 89,596 - -0.5 89,596 - -1.1 89,596 - +0.3 89,596 - +0.2 89,596 - -0.3 89,596 - -0.2 89,631 + HGI48_RS00355 0.12 +0.1 89,631 + HGI48_RS00355 0.12 +0.3 89,632 - HGI48_RS00355 0.12 +1.7 89,632 - HGI48_RS00355 0.12 -0.1 89,632 - HGI48_RS00355 0.12 -0.9 89,632 - +1.4 89,632 - HGI48_RS00355 0.12 -0.3 89,696 + HGI48_RS00355 0.16 -0.9 89,748 - HGI48_RS00355 0.20 +0.5 89,769 + HGI48_RS00355 0.22 -0.1 89,769 + HGI48_RS00355 0.22 -0.8 89,769 + HGI48_RS00355 0.22 -0.1 89,769 + HGI48_RS00355 0.22 -1.6 89,769 + HGI48_RS00355 0.22 +0.1 89,769 + HGI48_RS00355 0.22 -1.0 89,770 - HGI48_RS00355 0.22 +0.6 89,770 - HGI48_RS00355 0.22 -2.3 89,846 + HGI48_RS00355 0.27 -1.6 89,847 - HGI48_RS00355 0.28 -0.3 89,847 - HGI48_RS00355 0.28 -0.8 89,847 - HGI48_RS00355 0.28 -0.6 89,847 - HGI48_RS00355 0.28 +0.5 89,868 + HGI48_RS00355 0.29 +0.0 89,869 - HGI48_RS00355 0.29 -0.4 89,935 - HGI48_RS00355 0.34 -0.9 89,935 - HGI48_RS00355 0.34 -0.6 89,999 + HGI48_RS00355 0.39 -0.2 90,000 - HGI48_RS00355 0.39 +0.5 90,000 - HGI48_RS00355 0.39 +1.3 90,021 + HGI48_RS00355 0.40 -1.1 90,045 + HGI48_RS00355 0.42 +1.0 90,045 + +1.7 90,045 + HGI48_RS00355 0.42 +1.0 90,046 - +0.7 90,046 - HGI48_RS00355 0.42 -1.0 90,046 - HGI48_RS00355 0.42 +1.0 90,051 - HGI48_RS00355 0.43 -1.1 90,125 + HGI48_RS00355 0.48 -0.5 90,144 - HGI48_RS00355 0.50 -0.2 90,266 + HGI48_RS00355 0.59 -1.9 90,267 - HGI48_RS00355 0.59 +1.3 90,320 + HGI48_RS00355 0.63 +0.9 90,348 + HGI48_RS00355 0.65 +1.9 90,348 + HGI48_RS00355 0.65 -2.6 90,348 + HGI48_RS00355 0.65 -0.2 90,348 + HGI48_RS00355 0.65 +0.8 90,349 - HGI48_RS00355 0.65 -0.9 90,349 - HGI48_RS00355 0.65 -1.9 90,349 - HGI48_RS00355 0.65 +0.1 90,349 - HGI48_RS00355 0.65 -0.4 90,349 - HGI48_RS00355 0.65 -0.5
Or see this region's nucleotide sequence