Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00155

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00145 and HGI48_RS00150 overlap by 4 nucleotidesHGI48_RS00150 and HGI48_RS00155 are separated by 1 nucleotidesHGI48_RS00155 and HGI48_RS00160 are separated by 29 nucleotides HGI48_RS00145: HGI48_RS00145 - ABC transporter ATP-binding protein, at 36,780 to 38,477 _RS00145 HGI48_RS00150: HGI48_RS00150 - ABC transporter permease, at 38,474 to 39,349 _RS00150 HGI48_RS00155: HGI48_RS00155 - ABC transporter permease, at 39,351 to 40,292 _RS00155 HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965 _RS00160 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.580 kb on + strand, within HGI48_RS00150at 38.580 kb on + strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.581 kb on - strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.731 kb on + strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.732 kb on - strand, within HGI48_RS00150at 38.750 kb on - strandat 39.090 kb on + strand, within HGI48_RS00150at 39.090 kb on + strand, within HGI48_RS00150at 39.091 kb on - strandat 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.126 kb on + strand, within HGI48_RS00150at 39.127 kb on - strand, within HGI48_RS00150at 39.127 kb on - strand, within HGI48_RS00150at 39.141 kb on + strand, within HGI48_RS00150at 39.141 kb on + strandat 39.141 kb on + strand, within HGI48_RS00150at 39.141 kb on + strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.142 kb on - strand, within HGI48_RS00150at 39.305 kb on - strandat 39.349 kb on + strandat 39.349 kb on + strandat 39.349 kb on + strandat 39.350 kb on - strandat 39.462 kb on + strand, within HGI48_RS00155at 39.462 kb on + strand, within HGI48_RS00155at 39.463 kb on - strand, within HGI48_RS00155at 39.463 kb on - strand, within HGI48_RS00155at 40.001 kb on + strand, within HGI48_RS00155at 40.118 kb on - strand, within HGI48_RS00155at 40.153 kb on - strand, within HGI48_RS00155at 40.209 kb on + strandat 40.229 kb on + strandat 40.229 kb on + strandat 40.229 kb on + strandat 40.230 kb on - strandat 40.279 kb on + strandat 40.279 kb on + strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.280 kb on - strandat 40.323 kb on + strandat 40.344 kb on + strandat 40.345 kb on - strandat 40.437 kb on + strandat 40.437 kb on + strandat 40.437 kb on + strandat 40.437 kb on + strandat 40.438 kb on - strandat 40.438 kb on - strandat 40.438 kb on - strandat 40.438 kb on - strandat 40.455 kb on + strandat 40.455 kb on + strandat 40.455 kb on + strandat 40.456 kb on - strandat 40.609 kb on - strand, within HGI48_RS00160at 40.611 kb on + strand, within HGI48_RS00160at 40.611 kb on + strand, within HGI48_RS00160at 40.612 kb on - strand, within HGI48_RS00160at 40.625 kb on + strand, within HGI48_RS00160at 40.625 kb on + strand, within HGI48_RS00160at 40.626 kb on - strand, within HGI48_RS00160at 40.977 kb on + strand, within HGI48_RS00160at 40.989 kb on + strand, within HGI48_RS00160at 40.989 kb on + strand, within HGI48_RS00160at 41.118 kb on + strand, within HGI48_RS00160at 41.119 kb on - strand, within HGI48_RS00160at 41.157 kb on + strand, within HGI48_RS00160at 41.157 kb on + strand, within HGI48_RS00160at 41.157 kb on + strand, within HGI48_RS00160at 41.238 kb on + strand, within HGI48_RS00160at 41.238 kb on + strand, within HGI48_RS00160at 41.238 kb on + strand, within HGI48_RS00160at 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strandat 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strand, within HGI48_RS00160at 41.239 kb on - strandat 41.239 kb on - strand, within HGI48_RS00160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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38,580 + HGI48_RS00150 0.12 -0.1
38,580 + HGI48_RS00150 0.12 +1.7
38,581 - HGI48_RS00150 0.12 +0.1
38,581 - HGI48_RS00150 0.12 +1.0
38,581 - HGI48_RS00150 0.12 +0.7
38,581 - HGI48_RS00150 0.12 -1.6
38,731 + HGI48_RS00150 0.29 -0.3
38,731 + HGI48_RS00150 0.29 -1.9
38,731 + HGI48_RS00150 0.29 +0.4
38,732 - HGI48_RS00150 0.29 +1.1
38,732 - HGI48_RS00150 0.29 -0.4
38,732 - HGI48_RS00150 0.29 -0.3
38,732 - HGI48_RS00150 0.29 -1.6
38,750 - +2.7
39,090 + HGI48_RS00150 0.70 -1.1
39,090 + HGI48_RS00150 0.70 +0.5
39,091 - +2.3
39,126 + HGI48_RS00150 0.74 -0.5
39,126 + HGI48_RS00150 0.74 +1.3
39,126 + HGI48_RS00150 0.74 -1.1
39,126 + HGI48_RS00150 0.74 -0.5
39,126 + HGI48_RS00150 0.74 -2.3
39,126 + HGI48_RS00150 0.74 +1.0
39,126 + HGI48_RS00150 0.74 -2.0
39,126 + HGI48_RS00150 0.74 +1.0
39,127 - HGI48_RS00150 0.75 -0.1
39,127 - HGI48_RS00150 0.75 +1.1
39,141 + HGI48_RS00150 0.76 -0.5
39,141 + +0.1
39,141 + HGI48_RS00150 0.76 -0.6
39,141 + HGI48_RS00150 0.76 +0.7
39,142 - HGI48_RS00150 0.76 +0.3
39,142 - HGI48_RS00150 0.76 +0.3
39,142 - HGI48_RS00150 0.76 -1.8
39,305 - +1.3
39,349 + -1.5
39,349 + -2.1
39,349 + +2.7
39,350 - -1.6
39,462 + HGI48_RS00155 0.12 -1.1
39,462 + HGI48_RS00155 0.12 -1.3
39,463 - HGI48_RS00155 0.12 +1.2
39,463 - HGI48_RS00155 0.12 +0.3
40,001 + HGI48_RS00155 0.69 +1.2
40,118 - HGI48_RS00155 0.81 -1.1
40,153 - HGI48_RS00155 0.85 -1.1
40,209 + -0.6
40,229 + -0.0
40,229 + -1.1
40,229 + -0.1
40,230 - -1.6
40,279 + -1.9
40,279 + +0.7
40,280 - +0.9
40,280 - -1.0
40,280 - -1.3
40,280 - -0.3
40,323 + +0.4
40,344 + -0.2
40,345 - -0.9
40,437 + -0.3
40,437 + -1.3
40,437 + -0.3
40,437 + -1.1
40,438 - -2.5
40,438 - +0.3
40,438 - +0.1
40,438 - -0.9
40,455 + -0.5
40,455 + +0.1
40,455 + -0.1
40,456 - -1.3
40,609 - HGI48_RS00160 0.17 +0.0
40,611 + HGI48_RS00160 0.18 +1.5
40,611 + HGI48_RS00160 0.18 +1.2
40,612 - HGI48_RS00160 0.18 -1.3
40,625 + HGI48_RS00160 0.18 +0.6
40,625 + HGI48_RS00160 0.18 -0.6
40,626 - HGI48_RS00160 0.18 -1.1
40,977 + HGI48_RS00160 0.40 -0.9
40,989 + HGI48_RS00160 0.41 +0.4
40,989 + HGI48_RS00160 0.41 -0.8
41,118 + HGI48_RS00160 0.48 -0.6
41,119 - HGI48_RS00160 0.48 -0.3
41,157 + HGI48_RS00160 0.51 -2.3
41,157 + HGI48_RS00160 0.51 +0.8
41,157 + HGI48_RS00160 0.51 -0.3
41,238 + HGI48_RS00160 0.56 +1.2
41,238 + HGI48_RS00160 0.56 +0.2
41,238 + HGI48_RS00160 0.56 +0.1
41,239 - HGI48_RS00160 0.56 -2.6
41,239 - +0.7
41,239 - HGI48_RS00160 0.56 -0.1
41,239 - HGI48_RS00160 0.56 -0.1
41,239 - HGI48_RS00160 0.56 -0.1
41,239 - HGI48_RS00160 0.56 -0.3
41,239 - HGI48_RS00160 0.56 -0.2
41,239 - +2.3
41,239 - HGI48_RS00160 0.56 -1.6

Or see this region's nucleotide sequence