Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00120 and HGI48_RS00125 are separated by 270 nucleotides HGI48_RS00125 and HGI48_RS00130 are separated by 140 nucleotides
HGI48_RS00120: HGI48_RS00120 - GNAT family N-acetyltransferase, at 32,365 to 32,832
_RS00120
HGI48_RS00125: HGI48_RS00125 - DUF3861 domain-containing protein, at 33,103 to 33,393
_RS00125
HGI48_RS00130: HGI48_RS00130 - glucokinase, at 33,534 to 34,502
_RS00130
Position (kb) 33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.105 kb on + strand at 32.105 kb on + strand at 32.122 kb on - strand at 32.133 kb on + strand at 32.133 kb on + strand at 32.133 kb on + strand at 32.133 kb on + strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.134 kb on - strand at 32.160 kb on + strand at 32.257 kb on + strand at 32.257 kb on + strand at 32.258 kb on - strand at 32.274 kb on + strand at 32.274 kb on + strand at 32.274 kb on + strand at 32.274 kb on + strand at 32.275 kb on - strand at 32.275 kb on - strand at 32.286 kb on + strand at 32.286 kb on + strand at 32.332 kb on + strand at 32.332 kb on + strand at 32.333 kb on - strand at 32.333 kb on - strand at 32.333 kb on - strand at 32.444 kb on - strand, within HGI48_RS00120 at 32.444 kb on - strand, within HGI48_RS00120 at 32.527 kb on + strand, within HGI48_RS00120 at 32.527 kb on + strand, within HGI48_RS00120 at 32.527 kb on + strand, within HGI48_RS00120 at 32.527 kb on + strand at 32.527 kb on + strand at 32.527 kb on + strand, within HGI48_RS00120 at 32.527 kb on + strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand, within HGI48_RS00120 at 32.528 kb on - strand at 32.587 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.607 kb on - strand, within HGI48_RS00120 at 32.607 kb on - strand at 32.607 kb on - strand at 32.710 kb on - strand, within HGI48_RS00120 at 32.710 kb on - strand at 32.794 kb on + strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.852 kb on + strand at 32.853 kb on - strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.896 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.065 kb on - strand at 33.065 kb on - strand at 33.097 kb on - strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.110 kb on - strand at 33.110 kb on - strand at 33.120 kb on + strand at 33.121 kb on - strand at 33.121 kb on - strand at 33.136 kb on - strand, within HGI48_RS00125 at 33.136 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand at 33.361 kb on - strand, within HGI48_RS00125 at 33.401 kb on + strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.443 kb on + strand at 33.444 kb on - strand at 33.498 kb on + strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.501 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.543 kb on + strand at 33.544 kb on - strand at 33.544 kb on - strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.554 kb on - strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.673 kb on + strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.933 kb on + strand at 33.933 kb on + strand, within HGI48_RS00130 at 34.057 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 32,105 + +1.3 32,105 + -0.7 32,122 - +0.2 32,133 + -1.6 32,133 + -0.1 32,133 + -0.3 32,133 + -1.3 32,134 - +1.1 32,134 - -0.3 32,134 - +0.1 32,134 - +0.4 32,134 - -0.3 32,134 - -2.1 32,134 - +1.0 32,134 - +0.3 32,134 - +2.0 32,134 - -0.6 32,160 + -0.3 32,257 + -1.0 32,257 + -0.9 32,258 - -3.0 32,274 + +0.7 32,274 + -0.9 32,274 + -0.1 32,274 + +0.7 32,275 - +0.7 32,275 - +1.0 32,286 + -0.3 32,286 + -0.1 32,332 + -1.0 32,332 + +0.1 32,333 - -0.3 32,333 - +1.4 32,333 - -0.7 32,444 - HGI48_RS00120 0.17 -0.5 32,444 - HGI48_RS00120 0.17 -0.2 32,527 + HGI48_RS00120 0.35 +0.1 32,527 + HGI48_RS00120 0.35 +1.3 32,527 + HGI48_RS00120 0.35 -2.3 32,527 + +0.7 32,527 + +0.7 32,527 + HGI48_RS00120 0.35 -1.6 32,527 + HGI48_RS00120 0.35 -0.6 32,528 - HGI48_RS00120 0.35 -0.3 32,528 - HGI48_RS00120 0.35 +0.9 32,528 - HGI48_RS00120 0.35 +0.3 32,528 - HGI48_RS00120 0.35 -0.3 32,528 - HGI48_RS00120 0.35 +0.2 32,528 - HGI48_RS00120 0.35 -0.7 32,528 - -0.3 32,587 + +0.1 32,600 + HGI48_RS00120 0.50 -0.2 32,600 + HGI48_RS00120 0.50 +0.1 32,600 + HGI48_RS00120 0.50 -1.2 32,600 + +0.7 32,600 + HGI48_RS00120 0.50 +0.1 32,600 + HGI48_RS00120 0.50 -0.5 32,600 + HGI48_RS00120 0.50 -3.1 32,601 - HGI48_RS00120 0.50 -0.4 32,601 - HGI48_RS00120 0.50 -0.3 32,606 + HGI48_RS00120 0.51 -0.9 32,606 + HGI48_RS00120 0.51 -1.6 32,607 - HGI48_RS00120 0.52 +0.9 32,607 - +1.3 32,607 - +2.3 32,710 - HGI48_RS00120 0.74 -0.6 32,710 - +1.1 32,794 + +0.7 32,795 - -0.2 32,795 - -0.7 32,795 - -0.8 32,852 + -0.5 32,853 - +0.1 32,890 + -1.6 32,890 + +2.7 32,890 + -0.1 32,890 + -1.6 32,891 - -0.3 32,891 - +0.6 32,891 - +1.1 32,891 - +0.7 32,891 - +0.3 32,896 + +0.1 33,064 + -1.9 33,064 + -1.3 33,064 + -1.0 33,064 + +0.3 33,064 + +0.3 33,064 + +1.3 33,064 + +0.1 33,064 + -1.6 33,064 + +1.7 33,065 - -0.8 33,065 - -1.3 33,097 - -0.1 33,102 + -1.3 33,102 + -1.6 33,102 + -0.1 33,102 + -1.6 33,102 + -1.1 33,102 + -0.3 33,102 + +0.5 33,103 - +1.1 33,103 - +1.4 33,103 - -0.3 33,103 - -0.1 33,110 - -0.9 33,110 - -0.3 33,120 + -0.5 33,121 - +1.1 33,121 - +0.8 33,136 - HGI48_RS00125 0.11 -1.2 33,136 - HGI48_RS00125 0.11 +0.7 33,361 - HGI48_RS00125 0.89 -0.7 33,361 - HGI48_RS00125 0.89 +0.2 33,361 - HGI48_RS00125 0.89 +0.3 33,361 - HGI48_RS00125 0.89 +0.9 33,361 - HGI48_RS00125 0.89 -0.6 33,361 - +0.1 33,361 - HGI48_RS00125 0.89 -1.3 33,401 + +1.7 33,402 - +1.3 33,402 - -0.2 33,402 - +0.7 33,402 - -1.3 33,402 - +0.6 33,437 + +0.6 33,437 + -0.9 33,437 + -0.9 33,437 + +0.7 33,437 + +1.2 33,437 + -0.1 33,438 - -1.3 33,438 - +0.3 33,438 - +0.8 33,443 + -0.6 33,444 - +0.9 33,498 + -0.3 33,499 - +0.7 33,499 - -0.9 33,499 - -0.2 33,499 - -0.3 33,499 - -1.8 33,501 - -0.3 33,511 - +0.3 33,511 - -1.9 33,511 - +1.2 33,511 - +1.7 33,511 - -0.5 33,528 + -1.3 33,528 + +0.9 33,528 + -2.1 33,528 + +1.5 33,528 + -0.1 33,533 + -0.2 33,533 + +0.9 33,533 + -0.6 33,533 + -0.1 33,533 + +0.1 33,533 + +0.2 33,534 - -1.9 33,534 - -1.1 33,534 - -0.5 33,534 - +0.7 33,543 + +0.1 33,544 - -0.3 33,544 - -0.9 33,553 + -0.9 33,553 + -1.9 33,554 - +0.9 33,623 + +0.5 33,623 + +3.5 33,623 + -1.3 33,673 + HGI48_RS00130 0.14 +0.7 33,674 - HGI48_RS00130 0.14 -0.5 33,674 - HGI48_RS00130 0.14 -0.6 33,674 - HGI48_RS00130 0.14 -0.8 33,716 + HGI48_RS00130 0.19 -2.2 33,716 + HGI48_RS00130 0.19 +0.0 33,716 + HGI48_RS00130 0.19 -1.9 33,716 + HGI48_RS00130 0.19 +0.4 33,717 - HGI48_RS00130 0.19 +0.5 33,717 - HGI48_RS00130 0.19 +0.3 33,717 - HGI48_RS00130 0.19 +0.7 33,717 - HGI48_RS00130 0.19 -0.7 33,717 - HGI48_RS00130 0.19 -0.8 33,933 + +3.3 33,933 + HGI48_RS00130 0.41 +1.4 34,057 + HGI48_RS00130 0.54 +1.0 34,127 + HGI48_RS00130 0.61 -1.1 34,127 + HGI48_RS00130 0.61 -0.1 34,127 + HGI48_RS00130 0.61 +1.0 34,127 + HGI48_RS00130 0.61 +0.3 34,127 + HGI48_RS00130 0.61 -0.9 34,128 - HGI48_RS00130 0.61 -0.3 34,128 - HGI48_RS00130 0.61 -0.3 34,311 + HGI48_RS00130 0.80 +0.9 34,311 + HGI48_RS00130 0.80 +0.8 34,311 + HGI48_RS00130 0.80 +1.3 34,311 + HGI48_RS00130 0.80 +1.6 34,311 + +0.1 34,311 + HGI48_RS00130 0.80 +0.5 34,311 + HGI48_RS00130 0.80 -1.0 34,311 + HGI48_RS00130 0.80 +0.7 34,311 + HGI48_RS00130 0.80 -0.3 34,312 - HGI48_RS00130 0.80 -1.3 34,312 - HGI48_RS00130 0.80 +1.7
Or see this region's nucleotide sequence