Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08340 and DDA3937_RS08345 are separated by 167 nucleotides DDA3937_RS08345 and DDA3937_RS22080 are separated by 128 nucleotides DDA3937_RS22080 and DDA3937_RS23110 are separated by 15 nucleotides
DDA3937_RS08340: DDA3937_RS08340 - conjugal transfer protein TrbF, at 1,882,498 to 1,882,758
_RS08340
DDA3937_RS08345: DDA3937_RS08345 - TrbI/VirB10 family protein, at 1,882,926 to 1,883,471
_RS08345
DDA3937_RS22080: DDA3937_RS22080 - transposase, at 1,883,600 to 1,883,726
_RS22080
DDA3937_RS23110: DDA3937_RS23110 - amino acid adenylation domain-containing protein, at 1,883,742 to 1,886,666
_RS23110
Position (kb) 1883
1884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1882.700 kb on - strand, within DDA3937_RS08340 at 1882.769 kb on + strand at 1882.769 kb on + strand at 1882.770 kb on - strand at 1882.770 kb on - strand at 1882.772 kb on + strand at 1882.772 kb on + strand at 1882.773 kb on - strand at 1882.788 kb on - strand at 1882.794 kb on + strand at 1883.005 kb on + strand, within DDA3937_RS08345 at 1883.033 kb on + strand, within DDA3937_RS08345 at 1883.037 kb on + strand, within DDA3937_RS08345 at 1883.037 kb on + strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.038 kb on - strand, within DDA3937_RS08345 at 1883.056 kb on - strand, within DDA3937_RS08345 at 1883.224 kb on + strand, within DDA3937_RS08345 at 1883.224 kb on + strand, within DDA3937_RS08345 at 1883.225 kb on - strand, within DDA3937_RS08345 at 1883.225 kb on - strand, within DDA3937_RS08345 at 1883.283 kb on - strand, within DDA3937_RS08345 at 1883.283 kb on - strand, within DDA3937_RS08345 at 1883.529 kb on + strand at 1883.529 kb on + strand at 1883.529 kb on + strand at 1883.543 kb on - strand at 1883.557 kb on + strand at 1883.557 kb on + strand at 1883.557 kb on + strand at 1883.558 kb on - strand at 1883.558 kb on - strand at 1883.558 kb on - strand at 1883.562 kb on + strand at 1883.562 kb on + strand at 1883.622 kb on - strand, within DDA3937_RS22080 at 1883.624 kb on - strand, within DDA3937_RS22080 at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.739 kb on + strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.740 kb on - strand at 1883.836 kb on + strand at 1883.836 kb on + strand at 1883.836 kb on + strand at 1883.837 kb on - strand at 1883.837 kb on - strand at 1883.851 kb on + strand at 1883.851 kb on + strand at 1883.852 kb on - strand at 1883.852 kb on - strand at 1883.874 kb on + strand at 1883.874 kb on + strand at 1883.876 kb on + strand at 1883.876 kb on + strand at 1883.876 kb on + strand at 1883.877 kb on - strand at 1883.877 kb on - strand at 1883.892 kb on + strand at 1883.897 kb on + strand at 1883.898 kb on - strand at 1883.982 kb on - strand at 1884.008 kb on - strand at 1884.008 kb on - strand at 1884.014 kb on + strand at 1884.014 kb on + strand at 1884.083 kb on + strand, within DDA3937_RS23110 at 1884.121 kb on + strand, within DDA3937_RS23110 at 1884.121 kb on + strand, within DDA3937_RS23110 at 1884.122 kb on - strand, within DDA3937_RS23110 at 1884.122 kb on - strand, within DDA3937_RS23110 at 1884.215 kb on + strand, within DDA3937_RS23110 at 1884.216 kb on - strand, within DDA3937_RS23110 at 1884.218 kb on + strand, within DDA3937_RS23110 at 1884.218 kb on + strand, within DDA3937_RS23110 at 1884.219 kb on - strand, within DDA3937_RS23110 at 1884.230 kb on + strand, within DDA3937_RS23110 at 1884.248 kb on + strand, within DDA3937_RS23110 at 1884.249 kb on - strand, within DDA3937_RS23110 at 1884.249 kb on - strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.252 kb on + strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.253 kb on - strand, within DDA3937_RS23110 at 1884.254 kb on + strand, within DDA3937_RS23110 at 1884.300 kb on + strand, within DDA3937_RS23110 at 1884.301 kb on - strand, within DDA3937_RS23110 at 1884.301 kb on - strand, within DDA3937_RS23110 at 1884.311 kb on + strand, within DDA3937_RS23110 at 1884.311 kb on + strand, within DDA3937_RS23110 at 1884.312 kb on - strand, within DDA3937_RS23110 at 1884.331 kb on - strand, within DDA3937_RS23110 at 1884.348 kb on + strand, within DDA3937_RS23110 at 1884.401 kb on - strand, within DDA3937_RS23110 at 1884.401 kb on - strand, within DDA3937_RS23110 at 1884.416 kb on + strand, within DDA3937_RS23110 at 1884.416 kb on + strand, within DDA3937_RS23110 at 1884.416 kb on + strand, within DDA3937_RS23110 at 1884.416 kb on + strand, within DDA3937_RS23110 at 1884.417 kb on - strand, within DDA3937_RS23110 at 1884.417 kb on - strand, within DDA3937_RS23110 at 1884.417 kb on - strand, within DDA3937_RS23110 at 1884.417 kb on - strand, within DDA3937_RS23110 at 1884.417 kb on - strand at 1884.419 kb on + strand, within DDA3937_RS23110 at 1884.419 kb on + strand, within DDA3937_RS23110 at 1884.420 kb on - strand, within DDA3937_RS23110 at 1884.420 kb on - strand, within DDA3937_RS23110 at 1884.420 kb on - strand, within DDA3937_RS23110 at 1884.455 kb on - strand, within DDA3937_RS23110 at 1884.455 kb on - strand, within DDA3937_RS23110 at 1884.478 kb on + strand, within DDA3937_RS23110 at 1884.478 kb on + strand, within DDA3937_RS23110 at 1884.481 kb on + strand, within DDA3937_RS23110 at 1884.504 kb on - strand, within DDA3937_RS23110 at 1884.504 kb on - strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.533 kb on + strand, within DDA3937_RS23110 at 1884.534 kb on - strand, within DDA3937_RS23110 at 1884.534 kb on - strand, within DDA3937_RS23110 at 1884.534 kb on - strand, within DDA3937_RS23110 at 1884.534 kb on - strand, within DDA3937_RS23110 at 1884.537 kb on + strand, within DDA3937_RS23110 at 1884.537 kb on + strand, within DDA3937_RS23110 at 1884.537 kb on + strand, within DDA3937_RS23110 at 1884.537 kb on + strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.538 kb on - strand, within DDA3937_RS23110 at 1884.555 kb on + strand, within DDA3937_RS23110 at 1884.555 kb on + strand, within DDA3937_RS23110 at 1884.556 kb on - strand, within DDA3937_RS23110 at 1884.556 kb on - strand, within DDA3937_RS23110 at 1884.556 kb on - strand at 1884.556 kb on - strand, within DDA3937_RS23110 at 1884.556 kb on - strand, within DDA3937_RS23110 at 1884.556 kb on - strand, within DDA3937_RS23110 at 1884.692 kb on + strand, within DDA3937_RS23110 at 1884.692 kb on + strand, within DDA3937_RS23110 at 1884.692 kb on + strand, within DDA3937_RS23110 at 1884.693 kb on - strand, within DDA3937_RS23110 at 1884.693 kb on - strand, within DDA3937_RS23110 at 1884.693 kb on - strand, within DDA3937_RS23110 at 1884.713 kb on + strand, within DDA3937_RS23110 at 1884.714 kb on - strand, within DDA3937_RS23110 at 1884.714 kb on - strand, within DDA3937_RS23110 at 1884.714 kb on - strand, within DDA3937_RS23110 at 1884.714 kb on - strand, within DDA3937_RS23110
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 1,882,700 - DDA3937_RS08340 0.77 +1.7 1,882,769 + -2.5 1,882,769 + -0.1 1,882,770 - +0.4 1,882,770 - -0.9 1,882,772 + -1.0 1,882,772 + -1.1 1,882,773 - +0.0 1,882,788 - -0.7 1,882,794 + +0.6 1,883,005 + DDA3937_RS08345 0.14 -0.4 1,883,033 + DDA3937_RS08345 0.20 -0.7 1,883,037 + DDA3937_RS08345 0.20 +0.6 1,883,037 + DDA3937_RS08345 0.20 +0.8 1,883,038 - DDA3937_RS08345 0.21 -1.5 1,883,038 - DDA3937_RS08345 0.21 +0.7 1,883,038 - DDA3937_RS08345 0.21 -1.7 1,883,038 - DDA3937_RS08345 0.21 +0.3 1,883,038 - DDA3937_RS08345 0.21 +3.6 1,883,038 - DDA3937_RS08345 0.21 -1.9 1,883,056 - DDA3937_RS08345 0.24 -1.0 1,883,224 + DDA3937_RS08345 0.55 -0.5 1,883,224 + DDA3937_RS08345 0.55 +4.1 1,883,225 - DDA3937_RS08345 0.55 -0.8 1,883,225 - DDA3937_RS08345 0.55 -2.6 1,883,283 - DDA3937_RS08345 0.65 -1.4 1,883,283 - DDA3937_RS08345 0.65 +0.5 1,883,529 + -0.6 1,883,529 + -1.3 1,883,529 + -0.0 1,883,543 - -0.4 1,883,557 + -1.3 1,883,557 + -1.0 1,883,557 + -1.3 1,883,558 - +1.0 1,883,558 - +0.5 1,883,558 - -0.5 1,883,562 + +1.3 1,883,562 + +1.0 1,883,622 - DDA3937_RS22080 0.17 -1.7 1,883,624 - DDA3937_RS22080 0.19 -0.6 1,883,739 + +0.7 1,883,739 + +0.7 1,883,739 + +0.1 1,883,739 + -0.6 1,883,739 + -0.3 1,883,739 + -1.0 1,883,739 + -1.0 1,883,739 + +1.9 1,883,740 - -1.0 1,883,740 - +0.3 1,883,740 - -1.7 1,883,740 - -2.4 1,883,740 - +1.5 1,883,740 - -2.2 1,883,740 - -0.3 1,883,836 + +1.3 1,883,836 + -1.4 1,883,836 + -0.4 1,883,837 - -2.2 1,883,837 - +0.3 1,883,851 + -1.2 1,883,851 + +1.7 1,883,852 - -0.5 1,883,852 - +1.3 1,883,874 + -0.1 1,883,874 + -0.7 1,883,876 + +0.8 1,883,876 + -1.8 1,883,876 + +0.3 1,883,877 - +1.7 1,883,877 - -0.5 1,883,892 + -0.9 1,883,897 + -1.6 1,883,898 - +1.3 1,883,982 - -0.3 1,884,008 - +2.4 1,884,008 - -0.8 1,884,014 + -2.2 1,884,014 + -0.6 1,884,083 + DDA3937_RS23110 0.12 +2.1 1,884,121 + DDA3937_RS23110 0.13 -1.6 1,884,121 + DDA3937_RS23110 0.13 +0.1 1,884,122 - DDA3937_RS23110 0.13 -0.8 1,884,122 - DDA3937_RS23110 0.13 -1.7 1,884,215 + DDA3937_RS23110 0.16 +1.0 1,884,216 - DDA3937_RS23110 0.16 +2.0 1,884,218 + DDA3937_RS23110 0.16 -1.4 1,884,218 + DDA3937_RS23110 0.16 -0.5 1,884,219 - DDA3937_RS23110 0.16 +1.1 1,884,230 + DDA3937_RS23110 0.17 -2.4 1,884,248 + DDA3937_RS23110 0.17 +0.3 1,884,249 - DDA3937_RS23110 0.17 -1.4 1,884,249 - DDA3937_RS23110 0.17 +1.3 1,884,252 + DDA3937_RS23110 0.17 -1.4 1,884,252 + DDA3937_RS23110 0.17 -1.5 1,884,252 + DDA3937_RS23110 0.17 -1.3 1,884,252 + DDA3937_RS23110 0.17 +1.0 1,884,252 + DDA3937_RS23110 0.17 -0.0 1,884,252 + DDA3937_RS23110 0.17 -0.2 1,884,252 + DDA3937_RS23110 0.17 -0.3 1,884,253 - DDA3937_RS23110 0.17 +3.4 1,884,253 - DDA3937_RS23110 0.17 -1.7 1,884,253 - DDA3937_RS23110 0.17 +0.3 1,884,253 - DDA3937_RS23110 0.17 -1.3 1,884,253 - DDA3937_RS23110 0.17 +0.0 1,884,253 - DDA3937_RS23110 0.17 -1.0 1,884,253 - DDA3937_RS23110 0.17 +2.0 1,884,253 - DDA3937_RS23110 0.17 +0.4 1,884,253 - DDA3937_RS23110 0.17 -0.0 1,884,254 + DDA3937_RS23110 0.18 -0.7 1,884,300 + DDA3937_RS23110 0.19 -1.6 1,884,301 - DDA3937_RS23110 0.19 +0.1 1,884,301 - DDA3937_RS23110 0.19 -0.9 1,884,311 + DDA3937_RS23110 0.19 -1.7 1,884,311 + DDA3937_RS23110 0.19 -2.2 1,884,312 - DDA3937_RS23110 0.19 -0.7 1,884,331 - DDA3937_RS23110 0.20 -1.9 1,884,348 + DDA3937_RS23110 0.21 -1.1 1,884,401 - DDA3937_RS23110 0.23 -0.9 1,884,401 - DDA3937_RS23110 0.23 -1.3 1,884,416 + DDA3937_RS23110 0.23 +0.7 1,884,416 + DDA3937_RS23110 0.23 -0.0 1,884,416 + DDA3937_RS23110 0.23 +1.5 1,884,416 + DDA3937_RS23110 0.23 +0.5 1,884,417 - DDA3937_RS23110 0.23 -0.1 1,884,417 - DDA3937_RS23110 0.23 -0.1 1,884,417 - DDA3937_RS23110 0.23 +0.2 1,884,417 - DDA3937_RS23110 0.23 -0.8 1,884,417 - +1.3 1,884,419 + DDA3937_RS23110 0.23 -0.7 1,884,419 + DDA3937_RS23110 0.23 -1.3 1,884,420 - DDA3937_RS23110 0.23 -1.2 1,884,420 - DDA3937_RS23110 0.23 +0.0 1,884,420 - DDA3937_RS23110 0.23 +1.7 1,884,455 - DDA3937_RS23110 0.24 -0.3 1,884,455 - DDA3937_RS23110 0.24 -1.9 1,884,478 + DDA3937_RS23110 0.25 +1.3 1,884,478 + DDA3937_RS23110 0.25 -1.3 1,884,481 + DDA3937_RS23110 0.25 +0.2 1,884,504 - DDA3937_RS23110 0.26 +1.3 1,884,504 - DDA3937_RS23110 0.26 -0.4 1,884,533 + DDA3937_RS23110 0.27 +1.2 1,884,533 + DDA3937_RS23110 0.27 -2.2 1,884,533 + DDA3937_RS23110 0.27 +0.3 1,884,533 + DDA3937_RS23110 0.27 -1.3 1,884,533 + DDA3937_RS23110 0.27 +1.0 1,884,533 + DDA3937_RS23110 0.27 -1.2 1,884,533 + DDA3937_RS23110 0.27 -1.4 1,884,533 + DDA3937_RS23110 0.27 -1.5 1,884,533 + DDA3937_RS23110 0.27 -2.3 1,884,534 - DDA3937_RS23110 0.27 +1.3 1,884,534 - DDA3937_RS23110 0.27 +0.7 1,884,534 - DDA3937_RS23110 0.27 -1.3 1,884,534 - DDA3937_RS23110 0.27 -3.2 1,884,537 + DDA3937_RS23110 0.27 -0.1 1,884,537 + DDA3937_RS23110 0.27 -0.7 1,884,537 + DDA3937_RS23110 0.27 +0.8 1,884,537 + DDA3937_RS23110 0.27 +2.5 1,884,538 - DDA3937_RS23110 0.27 +0.8 1,884,538 - DDA3937_RS23110 0.27 +0.6 1,884,538 - DDA3937_RS23110 0.27 -0.4 1,884,538 - DDA3937_RS23110 0.27 -0.4 1,884,538 - DDA3937_RS23110 0.27 +0.2 1,884,538 - DDA3937_RS23110 0.27 +0.6 1,884,538 - DDA3937_RS23110 0.27 +0.4 1,884,555 + DDA3937_RS23110 0.28 -1.7 1,884,555 + DDA3937_RS23110 0.28 +0.5 1,884,556 - DDA3937_RS23110 0.28 -1.3 1,884,556 - DDA3937_RS23110 0.28 -0.9 1,884,556 - +2.3 1,884,556 - DDA3937_RS23110 0.28 -0.5 1,884,556 - DDA3937_RS23110 0.28 +0.3 1,884,556 - DDA3937_RS23110 0.28 -0.3 1,884,692 + DDA3937_RS23110 0.32 -0.4 1,884,692 + DDA3937_RS23110 0.32 -2.9 1,884,692 + DDA3937_RS23110 0.32 -0.9 1,884,693 - DDA3937_RS23110 0.33 +0.1 1,884,693 - DDA3937_RS23110 0.33 -1.0 1,884,693 - DDA3937_RS23110 0.33 -0.3 1,884,713 + DDA3937_RS23110 0.33 -0.5 1,884,714 - DDA3937_RS23110 0.33 +0.9 1,884,714 - DDA3937_RS23110 0.33 +0.3 1,884,714 - DDA3937_RS23110 0.33 -0.0 1,884,714 - DDA3937_RS23110 0.33 +0.5
Or see this region's nucleotide sequence