Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21200 and DDA3937_RS21205 are separated by 2 nucleotides DDA3937_RS21205 and DDA3937_RS21210 are separated by 199 nucleotides DDA3937_RS21210 and DDA3937_RS21215 are separated by 42 nucleotides
DDA3937_RS21200: DDA3937_RS21200 - phosphoserine transaminase, at 4,826,491 to 4,827,612
_RS21200
DDA3937_RS21205: DDA3937_RS21205 - Lrp/AsnC family transcriptional regulator, at 4,827,615 to 4,828,085
_RS21205
DDA3937_RS21210: DDA3937_RS21210 - YitT family protein, at 4,828,285 to 4,828,932
_RS21210
DDA3937_RS21215: DDA3937_RS21215 - hypothetical protein, at 4,828,975 to 4,830,153
_RS21215
Position (kb) 4828
4829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4827.331 kb on + strand, within DDA3937_RS21200 at 4827.332 kb on - strand, within DDA3937_RS21200 at 4827.332 kb on - strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.355 kb on + strand, within DDA3937_RS21200 at 4827.356 kb on - strand, within DDA3937_RS21200 at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.367 kb on + strand at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.367 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.410 kb on + strand, within DDA3937_RS21200 at 4827.438 kb on + strand, within DDA3937_RS21200 at 4827.439 kb on - strand, within DDA3937_RS21200 at 4827.451 kb on + strand at 4827.515 kb on + strand at 4827.515 kb on + strand at 4827.516 kb on - strand at 4827.516 kb on - strand at 4827.762 kb on + strand, within DDA3937_RS21205 at 4827.762 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.879 kb on + strand, within DDA3937_RS21205 at 4827.880 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.884 kb on - strand, within DDA3937_RS21205 at 4827.932 kb on - strand, within DDA3937_RS21205 at 4828.100 kb on - strand at 4828.231 kb on + strand at 4828.250 kb on + strand at 4828.289 kb on + strand at 4828.289 kb on + strand at 4828.289 kb on + strand at 4828.290 kb on - strand at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.367 kb on + strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.368 kb on - strand, within DDA3937_RS21210 at 4828.463 kb on + strand, within DDA3937_RS21210 at 4828.463 kb on + strand, within DDA3937_RS21210 at 4828.464 kb on - strand, within DDA3937_RS21210 at 4828.479 kb on + strand, within DDA3937_RS21210 at 4828.479 kb on + strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.480 kb on - strand, within DDA3937_RS21210 at 4828.506 kb on + strand, within DDA3937_RS21210 at 4828.518 kb on + strand, within DDA3937_RS21210 at 4828.540 kb on + strand, within DDA3937_RS21210 at 4828.541 kb on - strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.639 kb on + strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.640 kb on - strand, within DDA3937_RS21210 at 4828.642 kb on - strand, within DDA3937_RS21210 at 4828.757 kb on - strand, within DDA3937_RS21210 at 4828.767 kb on + strand, within DDA3937_RS21210 at 4828.768 kb on - strand, within DDA3937_RS21210 at 4828.905 kb on + strand at 4828.905 kb on + strand at 4828.943 kb on + strand at 4828.943 kb on + strand at 4828.944 kb on - strand at 4828.944 kb on - strand at 4828.949 kb on + strand at 4828.950 kb on - strand at 4828.977 kb on - strand at 4829.032 kb on - strand at 4829.104 kb on - strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.123 kb on + strand, within DDA3937_RS21215 at 4829.124 kb on - strand, within DDA3937_RS21215 at 4829.124 kb on - strand, within DDA3937_RS21215 at 4829.124 kb on - strand at 4829.124 kb on - strand, within DDA3937_RS21215 at 4829.124 kb on - strand, within DDA3937_RS21215 at 4829.124 kb on - strand, within DDA3937_RS21215 at 4829.153 kb on + strand, within DDA3937_RS21215 at 4829.153 kb on + strand, within DDA3937_RS21215 at 4829.154 kb on - strand, within DDA3937_RS21215 at 4829.299 kb on - strand, within DDA3937_RS21215 at 4829.305 kb on + strand, within DDA3937_RS21215 at 4829.306 kb on - strand, within DDA3937_RS21215 at 4829.306 kb on - strand, within DDA3937_RS21215 at 4829.306 kb on - strand, within DDA3937_RS21215 at 4829.306 kb on - strand, within DDA3937_RS21215 at 4829.309 kb on + strand, within DDA3937_RS21215 at 4829.309 kb on + strand, within DDA3937_RS21215 at 4829.309 kb on + strand, within DDA3937_RS21215 at 4829.309 kb on + strand, within DDA3937_RS21215 at 4829.310 kb on - strand, within DDA3937_RS21215 at 4829.310 kb on - strand, within DDA3937_RS21215 at 4829.310 kb on - strand, within DDA3937_RS21215 at 4829.310 kb on - strand, within DDA3937_RS21215 at 4829.310 kb on - strand, within DDA3937_RS21215 at 4829.411 kb on - strand, within DDA3937_RS21215 at 4829.427 kb on + strand, within DDA3937_RS21215 at 4829.439 kb on + strand, within DDA3937_RS21215 at 4829.440 kb on - strand, within DDA3937_RS21215 at 4829.516 kb on - strand, within DDA3937_RS21215 at 4829.647 kb on + strand, within DDA3937_RS21215 at 4829.647 kb on + strand, within DDA3937_RS21215 at 4829.647 kb on + strand, within DDA3937_RS21215 at 4829.667 kb on + strand, within DDA3937_RS21215 at 4829.668 kb on - strand, within DDA3937_RS21215 at 4829.687 kb on - strand, within DDA3937_RS21215 at 4829.727 kb on + strand, within DDA3937_RS21215 at 4829.731 kb on - strand, within DDA3937_RS21215 at 4829.731 kb on - strand, within DDA3937_RS21215 at 4829.754 kb on + strand, within DDA3937_RS21215 at 4829.769 kb on + strand, within DDA3937_RS21215 at 4829.770 kb on - strand, within DDA3937_RS21215 at 4829.858 kb on - strand, within DDA3937_RS21215 at 4829.871 kb on + strand, within DDA3937_RS21215 at 4829.897 kb on + strand, within DDA3937_RS21215 at 4829.907 kb on + strand, within DDA3937_RS21215
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,827,331 + DDA3937_RS21200 0.75 +0.4 4,827,332 - DDA3937_RS21200 0.75 -0.4 4,827,332 - DDA3937_RS21200 0.75 -2.0 4,827,355 + DDA3937_RS21200 0.77 -0.3 4,827,355 + DDA3937_RS21200 0.77 -1.1 4,827,355 + DDA3937_RS21200 0.77 -0.8 4,827,356 - DDA3937_RS21200 0.77 -0.1 4,827,367 + DDA3937_RS21200 0.78 -2.0 4,827,367 + -0.4 4,827,367 + DDA3937_RS21200 0.78 +1.0 4,827,367 + DDA3937_RS21200 0.78 -2.3 4,827,410 + DDA3937_RS21200 0.82 -0.4 4,827,410 + DDA3937_RS21200 0.82 +1.8 4,827,410 + DDA3937_RS21200 0.82 +0.5 4,827,410 + DDA3937_RS21200 0.82 +0.8 4,827,438 + DDA3937_RS21200 0.84 -0.3 4,827,439 - DDA3937_RS21200 0.84 -2.2 4,827,451 + +0.3 4,827,515 + -1.1 4,827,515 + +0.9 4,827,516 - +1.2 4,827,516 - +1.4 4,827,762 + DDA3937_RS21205 0.31 -2.5 4,827,762 + DDA3937_RS21205 0.31 +0.6 4,827,879 + DDA3937_RS21205 0.56 -0.9 4,827,879 + DDA3937_RS21205 0.56 +0.1 4,827,879 + DDA3937_RS21205 0.56 +0.2 4,827,880 - DDA3937_RS21205 0.56 +0.9 4,827,884 - DDA3937_RS21205 0.57 -1.4 4,827,884 - DDA3937_RS21205 0.57 +0.1 4,827,884 - DDA3937_RS21205 0.57 -0.1 4,827,932 - DDA3937_RS21205 0.67 -1.0 4,828,100 - -0.7 4,828,231 + -0.9 4,828,250 + -1.5 4,828,289 + -0.1 4,828,289 + -0.2 4,828,289 + -1.2 4,828,290 - +2.3 4,828,367 + DDA3937_RS21210 0.13 -1.0 4,828,367 + DDA3937_RS21210 0.13 -0.7 4,828,367 + DDA3937_RS21210 0.13 -1.2 4,828,367 + DDA3937_RS21210 0.13 -0.8 4,828,368 - DDA3937_RS21210 0.13 -1.2 4,828,368 - DDA3937_RS21210 0.13 +0.1 4,828,368 - DDA3937_RS21210 0.13 -2.2 4,828,368 - DDA3937_RS21210 0.13 -1.4 4,828,368 - DDA3937_RS21210 0.13 +0.7 4,828,463 + DDA3937_RS21210 0.27 +0.3 4,828,463 + DDA3937_RS21210 0.27 +1.1 4,828,464 - DDA3937_RS21210 0.28 +1.6 4,828,479 + DDA3937_RS21210 0.30 -1.2 4,828,479 + DDA3937_RS21210 0.30 -1.1 4,828,480 - DDA3937_RS21210 0.30 -2.3 4,828,480 - DDA3937_RS21210 0.30 -0.3 4,828,480 - DDA3937_RS21210 0.30 -1.3 4,828,506 + DDA3937_RS21210 0.34 +0.4 4,828,518 + DDA3937_RS21210 0.36 -0.2 4,828,540 + DDA3937_RS21210 0.39 -0.9 4,828,541 - DDA3937_RS21210 0.40 -2.7 4,828,639 + DDA3937_RS21210 0.55 +1.2 4,828,639 + DDA3937_RS21210 0.55 -1.6 4,828,639 + DDA3937_RS21210 0.55 +1.0 4,828,639 + DDA3937_RS21210 0.55 -2.2 4,828,639 + +0.3 4,828,639 + DDA3937_RS21210 0.55 -1.4 4,828,639 + DDA3937_RS21210 0.55 -1.5 4,828,639 + DDA3937_RS21210 0.55 +0.8 4,828,639 + DDA3937_RS21210 0.55 -2.2 4,828,640 - DDA3937_RS21210 0.55 +0.9 4,828,640 - DDA3937_RS21210 0.55 -2.1 4,828,640 - DDA3937_RS21210 0.55 -0.1 4,828,640 - DDA3937_RS21210 0.55 +0.9 4,828,640 - DDA3937_RS21210 0.55 +0.0 4,828,640 - DDA3937_RS21210 0.55 -0.7 4,828,640 - DDA3937_RS21210 0.55 -1.8 4,828,640 - DDA3937_RS21210 0.55 -1.8 4,828,640 - DDA3937_RS21210 0.55 -0.4 4,828,642 - DDA3937_RS21210 0.55 -1.1 4,828,757 - DDA3937_RS21210 0.73 -0.2 4,828,767 + DDA3937_RS21210 0.74 -0.7 4,828,768 - DDA3937_RS21210 0.75 -0.7 4,828,905 + -0.5 4,828,905 + -0.6 4,828,943 + -1.2 4,828,943 + -1.6 4,828,944 - -2.1 4,828,944 - +2.4 4,828,949 + -1.6 4,828,950 - -0.4 4,828,977 - +0.1 4,829,032 - -0.1 4,829,104 - DDA3937_RS21215 0.11 -2.2 4,829,123 + DDA3937_RS21215 0.13 +0.6 4,829,123 + DDA3937_RS21215 0.13 +1.5 4,829,123 + DDA3937_RS21215 0.13 +0.3 4,829,123 + DDA3937_RS21215 0.13 -1.9 4,829,123 + DDA3937_RS21215 0.13 +1.9 4,829,123 + DDA3937_RS21215 0.13 -0.9 4,829,124 - DDA3937_RS21215 0.13 -1.4 4,829,124 - DDA3937_RS21215 0.13 +0.8 4,829,124 - +2.5 4,829,124 - DDA3937_RS21215 0.13 +1.2 4,829,124 - DDA3937_RS21215 0.13 -1.2 4,829,124 - DDA3937_RS21215 0.13 -1.9 4,829,153 + DDA3937_RS21215 0.15 -0.5 4,829,153 + DDA3937_RS21215 0.15 -1.2 4,829,154 - DDA3937_RS21215 0.15 -0.1 4,829,299 - DDA3937_RS21215 0.27 -1.3 4,829,305 + DDA3937_RS21215 0.28 -1.4 4,829,306 - DDA3937_RS21215 0.28 -1.2 4,829,306 - DDA3937_RS21215 0.28 +0.2 4,829,306 - DDA3937_RS21215 0.28 -3.0 4,829,306 - DDA3937_RS21215 0.28 -0.9 4,829,309 + DDA3937_RS21215 0.28 -1.1 4,829,309 + DDA3937_RS21215 0.28 -1.2 4,829,309 + DDA3937_RS21215 0.28 -1.7 4,829,309 + DDA3937_RS21215 0.28 -0.4 4,829,310 - DDA3937_RS21215 0.28 -0.6 4,829,310 - DDA3937_RS21215 0.28 -1.8 4,829,310 - DDA3937_RS21215 0.28 +0.5 4,829,310 - DDA3937_RS21215 0.28 -0.6 4,829,310 - DDA3937_RS21215 0.28 -0.8 4,829,411 - DDA3937_RS21215 0.37 +1.0 4,829,427 + DDA3937_RS21215 0.38 -2.7 4,829,439 + DDA3937_RS21215 0.39 -0.4 4,829,440 - DDA3937_RS21215 0.39 -0.5 4,829,516 - DDA3937_RS21215 0.46 +0.1 4,829,647 + DDA3937_RS21215 0.57 -1.9 4,829,647 + DDA3937_RS21215 0.57 -0.4 4,829,647 + DDA3937_RS21215 0.57 +2.6 4,829,667 + DDA3937_RS21215 0.59 -0.5 4,829,668 - DDA3937_RS21215 0.59 -1.3 4,829,687 - DDA3937_RS21215 0.60 -1.6 4,829,727 + DDA3937_RS21215 0.64 -0.5 4,829,731 - DDA3937_RS21215 0.64 +0.2 4,829,731 - DDA3937_RS21215 0.64 -0.4 4,829,754 + DDA3937_RS21215 0.66 +1.0 4,829,769 + DDA3937_RS21215 0.67 +0.9 4,829,770 - DDA3937_RS21215 0.67 +0.7 4,829,858 - DDA3937_RS21215 0.75 -0.4 4,829,871 + DDA3937_RS21215 0.76 -0.6 4,829,897 + DDA3937_RS21215 0.78 +0.9 4,829,907 + DDA3937_RS21215 0.79 -0.1
Or see this region's nucleotide sequence