Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20880 and DDA3937_RS20885 are separated by 358 nucleotides DDA3937_RS20885 and DDA3937_RS20890 are separated by 95 nucleotides DDA3937_RS20890 and DDA3937_RS23455 are separated by 158 nucleotides DDA3937_RS23455 and DDA3937_RS20900 are separated by 10 nucleotides
DDA3937_RS20880: DDA3937_RS20880 - DMT family transporter, at 4,747,360 to 4,748,253
_RS20880
DDA3937_RS20885: DDA3937_RS20885 - MarR family transcriptional regulator, at 4,748,612 to 4,749,112
_RS20885
DDA3937_RS20890: DDA3937_RS20890 - argininosuccinate synthase, at 4,749,208 to 4,750,557
_RS20890
DDA3937_RS23455: DDA3937_RS23455 - hypothetical protein, at 4,750,716 to 4,750,874
_RS23455
DDA3937_RS20900: DDA3937_RS20900 - nickel/cobalt efflux protein RcnA, at 4,750,885 to 4,751,829
_RS20900
Position (kb) 4749
4750
4751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4748.273 kb on + strand at 4748.273 kb on + strand at 4748.273 kb on + strand at 4748.273 kb on + strand at 4748.273 kb on + strand at 4748.273 kb on + strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.274 kb on - strand at 4748.300 kb on + strand at 4748.300 kb on + strand at 4748.382 kb on + strand at 4748.382 kb on + strand at 4748.403 kb on + strand at 4748.523 kb on + strand at 4748.524 kb on - strand at 4748.551 kb on + strand at 4748.551 kb on + strand at 4748.551 kb on + strand at 4748.551 kb on + strand at 4748.559 kb on + strand at 4748.560 kb on - strand at 4748.570 kb on - strand at 4748.593 kb on - strand at 4748.606 kb on + strand at 4748.748 kb on + strand, within DDA3937_RS20885 at 4748.748 kb on + strand, within DDA3937_RS20885 at 4748.748 kb on + strand, within DDA3937_RS20885 at 4748.749 kb on - strand, within DDA3937_RS20885 at 4748.759 kb on + strand, within DDA3937_RS20885 at 4748.819 kb on + strand, within DDA3937_RS20885 at 4748.820 kb on - strand, within DDA3937_RS20885 at 4749.158 kb on - strand at 4749.192 kb on + strand at 4749.209 kb on + strand at 4749.293 kb on + strand at 4749.294 kb on - strand at 4749.294 kb on - strand at 4749.294 kb on - strand at 4749.294 kb on - strand at 4749.333 kb on + strand at 4749.414 kb on - strand, within DDA3937_RS20890 at 4749.414 kb on - strand, within DDA3937_RS20890 at 4749.414 kb on - strand, within DDA3937_RS20890 at 4749.414 kb on - strand, within DDA3937_RS20890 at 4749.450 kb on - strand, within DDA3937_RS20890 at 4749.563 kb on + strand, within DDA3937_RS20890 at 4749.564 kb on - strand, within DDA3937_RS20890 at 4749.564 kb on - strand, within DDA3937_RS20890 at 4749.599 kb on + strand, within DDA3937_RS20890 at 4749.599 kb on + strand, within DDA3937_RS20890 at 4749.600 kb on - strand, within DDA3937_RS20890 at 4749.612 kb on + strand, within DDA3937_RS20890 at 4749.613 kb on - strand, within DDA3937_RS20890 at 4749.613 kb on - strand, within DDA3937_RS20890 at 4749.613 kb on - strand, within DDA3937_RS20890 at 4749.613 kb on - strand, within DDA3937_RS20890 at 4749.683 kb on + strand, within DDA3937_RS20890 at 4749.683 kb on + strand, within DDA3937_RS20890 at 4749.683 kb on + strand, within DDA3937_RS20890 at 4749.683 kb on + strand, within DDA3937_RS20890 at 4749.683 kb on + strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.684 kb on - strand, within DDA3937_RS20890 at 4749.712 kb on - strand, within DDA3937_RS20890 at 4749.981 kb on + strand, within DDA3937_RS20890 at 4749.986 kb on + strand, within DDA3937_RS20890 at 4749.987 kb on - strand at 4749.987 kb on - strand, within DDA3937_RS20890 at 4749.987 kb on - strand, within DDA3937_RS20890 at 4750.097 kb on + strand, within DDA3937_RS20890 at 4750.097 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.163 kb on + strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.164 kb on - strand, within DDA3937_RS20890 at 4750.185 kb on + strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.186 kb on - strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.262 kb on + strand, within DDA3937_RS20890 at 4750.263 kb on - strand, within DDA3937_RS20890 at 4750.269 kb on + strand, within DDA3937_RS20890 at 4750.371 kb on - strand, within DDA3937_RS20890 at 4750.371 kb on - strand, within DDA3937_RS20890 at 4750.400 kb on + strand, within DDA3937_RS20890 at 4750.400 kb on + strand, within DDA3937_RS20890 at 4750.436 kb on + strand at 4750.436 kb on + strand at 4750.436 kb on + strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.437 kb on - strand at 4750.442 kb on + strand at 4750.443 kb on - strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.557 kb on + strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.558 kb on - strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.561 kb on + strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.562 kb on - strand at 4750.590 kb on + strand at 4750.591 kb on - strand at 4750.591 kb on - strand at 4750.596 kb on + strand at 4750.596 kb on + strand at 4750.597 kb on - strand at 4750.730 kb on - strand at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.858 kb on - strand, within DDA3937_RS23455 at 4750.859 kb on + strand at 4750.860 kb on - strand at 4750.860 kb on - strand at 4750.860 kb on - strand at 4750.870 kb on + strand at 4750.872 kb on + strand at 4750.872 kb on + strand at 4750.873 kb on - strand at 4750.873 kb on - strand at 4750.887 kb on - strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.920 kb on + strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.921 kb on - strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.922 kb on + strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4750.923 kb on - strand at 4751.080 kb on + strand, within DDA3937_RS20900 at 4751.080 kb on + strand, within DDA3937_RS20900 at 4751.081 kb on - strand, within DDA3937_RS20900 at 4751.081 kb on - strand, within DDA3937_RS20900 at 4751.100 kb on + strand, within DDA3937_RS20900 at 4751.100 kb on + strand, within DDA3937_RS20900 at 4751.101 kb on - strand, within DDA3937_RS20900 at 4751.101 kb on - strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.118 kb on + strand, within DDA3937_RS20900 at 4751.119 kb on - strand, within DDA3937_RS20900 at 4751.119 kb on - strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.122 kb on + strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.123 kb on - strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.227 kb on + strand, within DDA3937_RS20900 at 4751.235 kb on + strand, within DDA3937_RS20900 at 4751.264 kb on + strand, within DDA3937_RS20900 at 4751.323 kb on - strand, within DDA3937_RS20900 at 4751.323 kb on - strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.460 kb on + strand, within DDA3937_RS20900 at 4751.461 kb on - strand, within DDA3937_RS20900 at 4751.499 kb on + strand, within DDA3937_RS20900 at 4751.517 kb on + strand at 4751.518 kb on - strand, within DDA3937_RS20900
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,748,273 + -1.8 4,748,273 + -0.7 4,748,273 + +0.3 4,748,273 + -0.8 4,748,273 + +0.0 4,748,273 + -1.9 4,748,274 - -2.2 4,748,274 - +0.9 4,748,274 - -1.4 4,748,274 - +2.4 4,748,274 - -0.3 4,748,274 - +2.6 4,748,274 - -1.1 4,748,300 + -0.1 4,748,300 + +0.0 4,748,382 + -0.8 4,748,382 + +0.3 4,748,403 + -0.1 4,748,523 + +0.9 4,748,524 - -1.2 4,748,551 + +0.9 4,748,551 + -1.7 4,748,551 + -1.1 4,748,551 + -1.1 4,748,559 + +0.3 4,748,560 - -0.1 4,748,570 - +0.5 4,748,593 - -0.5 4,748,606 + -1.9 4,748,748 + DDA3937_RS20885 0.27 +0.8 4,748,748 + DDA3937_RS20885 0.27 +0.3 4,748,748 + DDA3937_RS20885 0.27 -0.4 4,748,749 - DDA3937_RS20885 0.27 +2.2 4,748,759 + DDA3937_RS20885 0.29 +2.2 4,748,819 + DDA3937_RS20885 0.41 -0.0 4,748,820 - DDA3937_RS20885 0.42 +1.2 4,749,158 - +1.4 4,749,192 + -0.1 4,749,209 + -1.7 4,749,293 + +0.3 4,749,294 - -2.5 4,749,294 - -2.8 4,749,294 - -0.5 4,749,294 - -1.8 4,749,333 + -2.7 4,749,414 - DDA3937_RS20890 0.15 -1.1 4,749,414 - DDA3937_RS20890 0.15 -2.7 4,749,414 - DDA3937_RS20890 0.15 -1.4 4,749,414 - DDA3937_RS20890 0.15 -1.1 4,749,450 - DDA3937_RS20890 0.18 -1.5 4,749,563 + DDA3937_RS20890 0.26 -1.7 4,749,564 - DDA3937_RS20890 0.26 -1.7 4,749,564 - DDA3937_RS20890 0.26 -3.2 4,749,599 + DDA3937_RS20890 0.29 -1.7 4,749,599 + DDA3937_RS20890 0.29 -2.1 4,749,600 - DDA3937_RS20890 0.29 -1.9 4,749,612 + DDA3937_RS20890 0.30 -0.3 4,749,613 - DDA3937_RS20890 0.30 -3.5 4,749,613 - DDA3937_RS20890 0.30 -2.5 4,749,613 - DDA3937_RS20890 0.30 -1.9 4,749,613 - DDA3937_RS20890 0.30 -4.0 4,749,683 + DDA3937_RS20890 0.35 -2.3 4,749,683 + DDA3937_RS20890 0.35 -1.5 4,749,683 + DDA3937_RS20890 0.35 -3.7 4,749,683 + DDA3937_RS20890 0.35 -2.8 4,749,683 + DDA3937_RS20890 0.35 -4.1 4,749,684 - DDA3937_RS20890 0.35 -2.2 4,749,684 - DDA3937_RS20890 0.35 -1.2 4,749,684 - DDA3937_RS20890 0.35 -2.7 4,749,684 - DDA3937_RS20890 0.35 -1.4 4,749,684 - DDA3937_RS20890 0.35 -3.1 4,749,684 - DDA3937_RS20890 0.35 -2.0 4,749,712 - DDA3937_RS20890 0.37 -2.6 4,749,981 + DDA3937_RS20890 0.57 -1.9 4,749,986 + DDA3937_RS20890 0.58 -3.0 4,749,987 - -0.7 4,749,987 - DDA3937_RS20890 0.58 -1.2 4,749,987 - DDA3937_RS20890 0.58 -2.2 4,750,097 + DDA3937_RS20890 0.66 -3.4 4,750,097 + DDA3937_RS20890 0.66 -2.9 4,750,163 + DDA3937_RS20890 0.71 -3.6 4,750,163 + DDA3937_RS20890 0.71 -2.2 4,750,163 + DDA3937_RS20890 0.71 -3.5 4,750,163 + DDA3937_RS20890 0.71 -0.7 4,750,164 - DDA3937_RS20890 0.71 -2.4 4,750,164 - DDA3937_RS20890 0.71 -0.7 4,750,164 - DDA3937_RS20890 0.71 -3.9 4,750,164 - DDA3937_RS20890 0.71 -0.8 4,750,164 - DDA3937_RS20890 0.71 -1.1 4,750,164 - DDA3937_RS20890 0.71 -1.5 4,750,185 + DDA3937_RS20890 0.72 -3.4 4,750,186 - DDA3937_RS20890 0.72 -1.1 4,750,186 - DDA3937_RS20890 0.72 -0.4 4,750,186 - DDA3937_RS20890 0.72 -0.7 4,750,262 + DDA3937_RS20890 0.78 -2.4 4,750,262 + DDA3937_RS20890 0.78 -2.2 4,750,262 + DDA3937_RS20890 0.78 -1.1 4,750,262 + DDA3937_RS20890 0.78 -0.4 4,750,263 - DDA3937_RS20890 0.78 -1.1 4,750,269 + DDA3937_RS20890 0.79 -2.0 4,750,371 - DDA3937_RS20890 0.86 -1.5 4,750,371 - DDA3937_RS20890 0.86 -2.8 4,750,400 + DDA3937_RS20890 0.88 -3.2 4,750,400 + DDA3937_RS20890 0.88 +0.3 4,750,436 + -1.1 4,750,436 + -3.1 4,750,436 + -2.7 4,750,437 - -1.5 4,750,437 - -4.1 4,750,437 - -2.5 4,750,437 - -2.3 4,750,442 + -0.1 4,750,443 - -1.2 4,750,557 + -2.8 4,750,557 + -2.1 4,750,557 + -2.6 4,750,557 + +1.9 4,750,557 + -3.1 4,750,558 - -1.8 4,750,558 - -1.9 4,750,558 - -0.7 4,750,558 - -2.5 4,750,558 - -3.1 4,750,561 + -2.5 4,750,561 + -1.7 4,750,561 + -2.1 4,750,561 + -1.2 4,750,561 + -0.9 4,750,561 + -2.8 4,750,562 - -3.1 4,750,562 - -2.7 4,750,562 - -2.0 4,750,562 - -1.2 4,750,590 + -1.6 4,750,591 - -1.1 4,750,591 - -0.7 4,750,596 + +0.5 4,750,596 + -1.7 4,750,597 - +0.3 4,750,730 - -1.0 4,750,858 - DDA3937_RS23455 0.89 -0.9 4,750,858 - DDA3937_RS23455 0.89 +0.0 4,750,858 - DDA3937_RS23455 0.89 -0.5 4,750,859 + +1.5 4,750,860 - -0.9 4,750,860 - -0.1 4,750,860 - +1.5 4,750,870 + -2.7 4,750,872 + +1.1 4,750,872 + -0.6 4,750,873 - -0.4 4,750,873 - -1.1 4,750,887 - +1.4 4,750,920 + -2.1 4,750,920 + -1.9 4,750,920 + -1.8 4,750,920 + -0.9 4,750,920 + +0.4 4,750,920 + -1.5 4,750,920 + -1.3 4,750,921 - +0.3 4,750,921 - -0.1 4,750,921 - +1.5 4,750,921 - -0.5 4,750,921 - -0.1 4,750,921 - -0.7 4,750,921 - +0.0 4,750,922 + +0.7 4,750,922 + -0.9 4,750,922 + +0.4 4,750,922 + -1.4 4,750,922 + -1.4 4,750,922 + -1.8 4,750,922 + -0.2 4,750,922 + -2.2 4,750,922 + -1.4 4,750,922 + -1.1 4,750,922 + +0.3 4,750,923 - -1.4 4,750,923 - +1.2 4,750,923 - +0.4 4,750,923 - -0.1 4,750,923 - +1.3 4,750,923 - +0.9 4,751,080 + DDA3937_RS20900 0.21 -1.1 4,751,080 + DDA3937_RS20900 0.21 -2.0 4,751,081 - DDA3937_RS20900 0.21 -2.5 4,751,081 - DDA3937_RS20900 0.21 +0.8 4,751,100 + DDA3937_RS20900 0.23 +1.9 4,751,100 + DDA3937_RS20900 0.23 -0.9 4,751,101 - DDA3937_RS20900 0.23 -1.5 4,751,101 - DDA3937_RS20900 0.23 -0.1 4,751,118 + DDA3937_RS20900 0.25 -0.7 4,751,118 + DDA3937_RS20900 0.25 -1.5 4,751,118 + DDA3937_RS20900 0.25 -0.6 4,751,119 - DDA3937_RS20900 0.25 -0.2 4,751,119 - DDA3937_RS20900 0.25 -0.8 4,751,122 + DDA3937_RS20900 0.25 -3.7 4,751,122 + DDA3937_RS20900 0.25 -2.9 4,751,122 + DDA3937_RS20900 0.25 -2.2 4,751,122 + DDA3937_RS20900 0.25 +0.3 4,751,123 - DDA3937_RS20900 0.25 -0.8 4,751,123 - DDA3937_RS20900 0.25 -0.2 4,751,123 - DDA3937_RS20900 0.25 -0.7 4,751,123 - DDA3937_RS20900 0.25 -1.7 4,751,123 - DDA3937_RS20900 0.25 +1.6 4,751,123 - DDA3937_RS20900 0.25 -1.5 4,751,123 - DDA3937_RS20900 0.25 +0.9 4,751,123 - DDA3937_RS20900 0.25 -1.4 4,751,227 + DDA3937_RS20900 0.36 -1.8 4,751,227 + DDA3937_RS20900 0.36 +1.9 4,751,227 + DDA3937_RS20900 0.36 -1.9 4,751,235 + DDA3937_RS20900 0.37 -1.4 4,751,264 + DDA3937_RS20900 0.40 -1.5 4,751,323 - DDA3937_RS20900 0.46 -0.3 4,751,323 - DDA3937_RS20900 0.46 +0.8 4,751,460 + DDA3937_RS20900 0.61 -0.4 4,751,460 + DDA3937_RS20900 0.61 +2.9 4,751,460 + DDA3937_RS20900 0.61 -1.4 4,751,460 + DDA3937_RS20900 0.61 +0.1 4,751,461 - DDA3937_RS20900 0.61 +1.6 4,751,499 + DDA3937_RS20900 0.65 -0.9 4,751,517 + +0.9 4,751,518 - DDA3937_RS20900 0.67 +0.3
Or see this region's nucleotide sequence