Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20150

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,590,627	-				-1.2
4,590,627	-				+0.4
4,590,638	+				-1.8
4,590,638	+				+0.0
4,590,656	-				-2.0
4,590,660	-				+2.4
4,590,682	+				-1.7
4,590,682	+				-1.6
4,590,682	+				-0.1
4,590,682	+				+1.0
4,590,683	-				-1.1
4,590,683	-				-0.9
4,590,683	-				-1.1
4,590,753	+		DDA3937_RS20145	0.12	+0.6
4,590,753	+		DDA3937_RS20145	0.12	-1.5
4,590,754	-				+0.3
4,590,759	+		DDA3937_RS20145	0.13	-0.2
4,590,759	+		DDA3937_RS20145	0.13	+0.3
4,590,759	+		DDA3937_RS20145	0.13	-2.1
4,590,760	-		DDA3937_RS20145	0.13	-0.3
4,590,760	-		DDA3937_RS20145	0.13	-1.3
4,590,760	-		DDA3937_RS20145	0.13	-0.6
4,590,760	-		DDA3937_RS20145	0.13	-1.2
4,590,800	+		DDA3937_RS20145	0.18	-1.2
4,590,862	+		DDA3937_RS20145	0.27	-1.7
4,590,862	+		DDA3937_RS20145	0.27	+0.4
4,590,863	-		DDA3937_RS20145	0.27	-0.3
4,590,870	+				+0.8
4,590,870	+		DDA3937_RS20145	0.28	-0.2
4,590,871	-		DDA3937_RS20145	0.28	+1.3
4,590,918	+		DDA3937_RS20145	0.34	+0.3
4,590,919	-		DDA3937_RS20145	0.34	+0.5
4,590,919	-		DDA3937_RS20145	0.34	+0.8
4,590,962	+		DDA3937_RS20145	0.40	-1.3
4,590,962	+		DDA3937_RS20145	0.40	+2.3
4,590,963	-		DDA3937_RS20145	0.40	-2.5
4,591,007	+		DDA3937_RS20145	0.46	+0.6
4,591,007	+		DDA3937_RS20145	0.46	-0.5
4,591,008	-		DDA3937_RS20145	0.46	+0.2
4,591,035	+		DDA3937_RS20145	0.50	+1.6
4,591,035	+		DDA3937_RS20145	0.50	+0.4
4,591,036	-		DDA3937_RS20145	0.50	+0.8
4,591,036	-		DDA3937_RS20145	0.50	-0.1
4,591,036	-		DDA3937_RS20145	0.50	+0.1
4,591,038	+		DDA3937_RS20145	0.50	-1.0
4,591,038	+		DDA3937_RS20145	0.50	+2.6
4,591,062	+		DDA3937_RS20145	0.54	-0.7
4,591,083	+		DDA3937_RS20145	0.56	-1.2
4,591,084	-		DDA3937_RS20145	0.57	-1.7
4,591,126	+		DDA3937_RS20145	0.62	+0.9
4,591,175	-		DDA3937_RS20145	0.69	-0.7
4,591,187	-		DDA3937_RS20145	0.70	-0.7
4,591,187	-		DDA3937_RS20145	0.70	+0.3
4,591,216	+		DDA3937_RS20145	0.74	-0.2
4,591,216	+				+0.3
4,591,216	+		DDA3937_RS20145	0.74	-1.0
4,591,216	+		DDA3937_RS20145	0.74	-1.3
4,591,217	-		DDA3937_RS20145	0.74	-0.7
4,591,217	-		DDA3937_RS20145	0.74	-0.3
4,591,217	-		DDA3937_RS20145	0.74	+0.5
4,591,289	+		DDA3937_RS20145	0.84	-0.9
4,591,290	-		DDA3937_RS20145	0.84	+1.0
4,591,303	-		DDA3937_RS20145	0.86	-0.6
4,591,349	+				-1.3
4,591,349	+				-2.4
4,591,350	-				-0.2
4,591,350	-				-0.7
4,591,426	+				-0.9
4,591,426	+				-2.4
4,591,426	+				+1.8
4,591,426	+				-0.6
4,591,426	+				+0.8
4,591,427	-				+0.7
4,591,534	+				+1.4
4,591,535	-				-2.3
4,591,550	+				+0.9
4,591,550	+				-0.2
4,591,550	+				-2.6
4,591,566	+				-0.2
4,591,567	-				-0.7
4,591,620	+				+1.3
4,591,667	-				-1.6
4,591,685	+				+0.9
4,591,686	-				-0.6
4,591,686	-				-1.0
4,591,733	-		DDA3937_RS20150	0.11	-0.1
4,591,740	+		DDA3937_RS20150	0.11	-1.5
4,591,741	-		DDA3937_RS20150	0.11	-0.4
4,591,803	+		DDA3937_RS20150	0.15	-2.8
4,591,803	+		DDA3937_RS20150	0.15	-0.4
4,591,803	+		DDA3937_RS20150	0.15	-1.5
4,591,804	-		DDA3937_RS20150	0.15	-0.2
4,591,848	+		DDA3937_RS20150	0.18	+1.4
4,591,848	+		DDA3937_RS20150	0.18	-2.9
4,591,849	-		DDA3937_RS20150	0.18	-1.6
4,591,849	-		DDA3937_RS20150	0.18	-0.7
4,591,849	-		DDA3937_RS20150	0.18	-2.4
4,591,975	+		DDA3937_RS20150	0.27	-0.9
4,591,975	+		DDA3937_RS20150	0.27	+0.4
4,591,976	-		DDA3937_RS20150	0.27	-2.9
4,592,004	+				+0.3
4,592,004	+		DDA3937_RS20150	0.28	-2.3
4,592,004	+		DDA3937_RS20150	0.28	+0.3
4,592,004	+		DDA3937_RS20150	0.28	-0.7
4,592,004	+		DDA3937_RS20150	0.28	-2.1
4,592,005	-		DDA3937_RS20150	0.28	-1.1
4,592,133	+		DDA3937_RS20150	0.37	-3.0
4,592,134	-		DDA3937_RS20150	0.37	-2.4
4,592,134	-		DDA3937_RS20150	0.37	+0.3
4,592,134	-		DDA3937_RS20150	0.37	-1.6
4,592,134	-		DDA3937_RS20150	0.37	-0.9
4,592,134	-		DDA3937_RS20150	0.37	+0.9
4,592,134	-		DDA3937_RS20150	0.37	-2.2
4,592,134	-		DDA3937_RS20150	0.37	-1.9
4,592,173	+		DDA3937_RS20150	0.39	-1.5
4,592,173	+		DDA3937_RS20150	0.39	-3.1
4,592,174	-		DDA3937_RS20150	0.39	-1.9
4,592,198	-		DDA3937_RS20150	0.41	-1.7
4,592,198	-		DDA3937_RS20150	0.41	+1.2
4,592,214	+		DDA3937_RS20150	0.42	-1.9
4,592,214	+		DDA3937_RS20150	0.42	-1.1
4,592,214	+		DDA3937_RS20150	0.42	-1.5
4,592,337	+		DDA3937_RS20150	0.50	-1.1
4,592,718	+		DDA3937_RS20150	0.75	-1.3
4,592,720	+		DDA3937_RS20150	0.75	-1.8
4,592,720	+		DDA3937_RS20150	0.75	-2.4
4,592,721	-		DDA3937_RS20150	0.75	-0.5
4,592,721	-		DDA3937_RS20150	0.75	-2.5
4,593,064	-				-1.6
4,593,102	-				-0.8
4,593,102	-				-0.0
4,593,166	-				-1.1
4,593,581	-		DDA3937_RS20155	0.25	-3.6
4,593,581	-		DDA3937_RS20155	0.25	-0.8
4,593,581	-		DDA3937_RS20155	0.25	-4.1
4,593,602	+		DDA3937_RS20155	0.26	-2.2
4,593,602	+		DDA3937_RS20155	0.26	-3.1
4,593,603	-		DDA3937_RS20155	0.26	-2.0
4,593,603	-		DDA3937_RS20155	0.26	-3.7
4,593,603	-		DDA3937_RS20155	0.26	-3.7
4,593,603	-		DDA3937_RS20155	0.26	-1.6
4,593,603	-		DDA3937_RS20155	0.26	-2.5
4,593,603	-		DDA3937_RS20155	0.26	-3.5
4,593,603	-		DDA3937_RS20155	0.26	-3.3
4,593,689	+		DDA3937_RS20155	0.31	-1.6
4,593,719	+		DDA3937_RS20155	0.33	-2.6
4,593,875	+		DDA3937_RS20155	0.41	-0.7
4,593,876	-		DDA3937_RS20155	0.41	-1.7
4,593,876	-		DDA3937_RS20155	0.41	-1.3
4,593,910	+		DDA3937_RS20155	0.43	-2.7
4,593,911	-		DDA3937_RS20155	0.43	-2.6
4,594,004	+		DDA3937_RS20155	0.48	-2.9
4,594,004	+		DDA3937_RS20155	0.48	-1.8
4,594,004	+		DDA3937_RS20155	0.48	-2.5
4,594,005	-		DDA3937_RS20155	0.48	-4.4
4,594,005	-		DDA3937_RS20155	0.48	-0.9
4,594,005	-		DDA3937_RS20155	0.48	-1.9