Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18010

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18000 and DDA3937_RS18005 are separated by 97 nucleotidesDDA3937_RS18005 and DDA3937_RS18010 are separated by 27 nucleotidesDDA3937_RS18010 and DDA3937_RS18015 are separated by 16 nucleotides DDA3937_RS18000: DDA3937_RS18000 - preprotein translocase subunit SecA, at 4,107,073 to 4,109,760 _RS18000 DDA3937_RS18005: DDA3937_RS18005 - secA regulator SecM, at 4,109,858 to 4,110,361 _RS18005 DDA3937_RS18010: DDA3937_RS18010 - DUF721 domain-containing protein, at 4,110,389 to 4,110,910 _RS18010 DDA3937_RS18015: DDA3937_RS18015 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 4,110,927 to 4,111,844 _RS18015 Position (kb) 4110 4111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4109.823 kb on - strandat 4109.851 kb on - strandat 4110.015 kb on - strandat 4110.071 kb on - strand, within DDA3937_RS18005at 4110.190 kb on - strand, within DDA3937_RS18005at 4110.190 kb on - strand, within DDA3937_RS18005at 4110.236 kb on - strand, within DDA3937_RS18005at 4110.236 kb on - strand, within DDA3937_RS18005at 4110.319 kb on - strandat 4110.319 kb on - strandat 4110.807 kb on + strand, within DDA3937_RS18010at 4110.886 kb on + strandat 4110.886 kb on + strandat 4110.887 kb on - strandat 4110.887 kb on - strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.914 kb on + strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.915 kb on - strandat 4110.918 kb on + strandat 4110.918 kb on + strandat 4110.918 kb on + strandat 4110.919 kb on - strandat 4110.919 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,109,823 - -0.2
4,109,851 - +0.6
4,110,015 - +1.2
4,110,071 - DDA3937_RS18005 0.42 -0.2
4,110,190 - DDA3937_RS18005 0.66 -0.0
4,110,190 - DDA3937_RS18005 0.66 +0.3
4,110,236 - DDA3937_RS18005 0.75 -0.2
4,110,236 - DDA3937_RS18005 0.75 +1.3
4,110,319 - +0.1
4,110,319 - -1.4
4,110,807 + DDA3937_RS18010 0.80 -1.4
4,110,886 + +0.8
4,110,886 + -0.2
4,110,887 - -0.3
4,110,887 - -0.1
4,110,914 + +0.5
4,110,914 + -3.4
4,110,914 + +0.7
4,110,914 + -0.6
4,110,914 + -1.0
4,110,914 + -1.2
4,110,914 + -0.1
4,110,914 + -1.2
4,110,915 - +0.9
4,110,915 - +0.2
4,110,915 - +0.2
4,110,915 - -1.2
4,110,915 - -0.6
4,110,915 - -1.4
4,110,915 - -1.6
4,110,915 - -1.0
4,110,915 - -0.6
4,110,915 - -0.3
4,110,915 - +0.7
4,110,915 - +0.8
4,110,915 - +2.0
4,110,915 - -0.5
4,110,915 - +1.3
4,110,915 - -0.0
4,110,918 + +0.2
4,110,918 + -3.0
4,110,918 + -0.6
4,110,919 - -1.5
4,110,919 - -0.7

Or see this region's nucleotide sequence