Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17770

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS17765 and DDA3937_RS17770 overlap by 4 nucleotidesDDA3937_RS17770 and DDA3937_RS17775 are separated by 43 nucleotides DDA3937_RS17765: DDA3937_RS17765 - ABC transporter ATP-binding protein, at 4,052,275 to 4,053,126 _RS17765 DDA3937_RS17770: DDA3937_RS17770 - metal ABC transporter permease, at 4,053,123 to 4,053,977 _RS17770 DDA3937_RS17775: DDA3937_RS17775 - metal ABC transporter substrate-binding protein, at 4,054,021 to 4,054,899 _RS17775 Position (kb) 4053 4054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4052.305 kb on + strandat 4052.306 kb on - strandat 4052.306 kb on - strandat 4052.422 kb on + strand, within DDA3937_RS17765at 4052.422 kb on + strand, within DDA3937_RS17765at 4052.422 kb on + strand, within DDA3937_RS17765at 4052.422 kb on + strand, within DDA3937_RS17765at 4052.422 kb on + strand, within DDA3937_RS17765at 4052.422 kb on + strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.423 kb on - strand, within DDA3937_RS17765at 4052.439 kb on + strand, within DDA3937_RS17765at 4052.439 kb on + strand, within DDA3937_RS17765at 4052.439 kb on + strand, within DDA3937_RS17765at 4052.439 kb on + strand, within DDA3937_RS17765at 4052.440 kb on - strand, within DDA3937_RS17765at 4052.440 kb on - strand, within DDA3937_RS17765at 4052.440 kb on - strand, within DDA3937_RS17765at 4052.440 kb on - strand, within DDA3937_RS17765at 4052.440 kb on - strand, within DDA3937_RS17765at 4052.633 kb on - strand, within DDA3937_RS17765at 4053.438 kb on + strand, within DDA3937_RS17770at 4053.438 kb on + strand, within DDA3937_RS17770at 4053.439 kb on - strandat 4053.439 kb on - strand, within DDA3937_RS17770at 4053.867 kb on + strand, within DDA3937_RS17770at 4053.962 kb on - strandat 4054.027 kb on + strandat 4054.097 kb on + strandat 4054.098 kb on - strandat 4054.098 kb on - strandat 4054.154 kb on + strand, within DDA3937_RS17775at 4054.154 kb on + strand, within DDA3937_RS17775at 4054.154 kb on + strand, within DDA3937_RS17775at 4054.155 kb on - strand, within DDA3937_RS17775at 4054.307 kb on - strand, within DDA3937_RS17775at 4054.420 kb on + strand, within DDA3937_RS17775at 4054.421 kb on - strand, within DDA3937_RS17775at 4054.421 kb on - strand, within DDA3937_RS17775at 4054.499 kb on - strand, within DDA3937_RS17775at 4054.511 kb on + strand, within DDA3937_RS17775at 4054.511 kb on + strand, within DDA3937_RS17775at 4054.512 kb on - strand, within DDA3937_RS17775at 4054.512 kb on - strand, within DDA3937_RS17775at 4054.528 kb on + strand, within DDA3937_RS17775at 4054.723 kb on + strand, within DDA3937_RS17775at 4054.723 kb on + strand, within DDA3937_RS17775at 4054.724 kb on - strand, within DDA3937_RS17775at 4054.724 kb on - strand, within DDA3937_RS17775at 4054.724 kb on - strand, within DDA3937_RS17775at 4054.846 kb on + strandat 4054.847 kb on - strandat 4054.847 kb on - strandat 4054.898 kb on - strandat 4054.915 kb on + strandat 4054.916 kb on - strandat 4054.916 kb on - strandat 4054.916 kb on - strandat 4054.916 kb on - strandat 4054.926 kb on - strandat 4054.946 kb on - strandat 4054.949 kb on + strandat 4054.950 kb on - strandat 4054.950 kb on - strandat 4054.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,052,305 + +0.4
4,052,306 - -2.7
4,052,306 - -0.0
4,052,422 + DDA3937_RS17765 0.17 -0.8
4,052,422 + DDA3937_RS17765 0.17 +0.2
4,052,422 + DDA3937_RS17765 0.17 -0.4
4,052,422 + DDA3937_RS17765 0.17 +0.3
4,052,422 + DDA3937_RS17765 0.17 +0.6
4,052,422 + DDA3937_RS17765 0.17 -0.1
4,052,423 - DDA3937_RS17765 0.17 -0.8
4,052,423 - DDA3937_RS17765 0.17 +0.9
4,052,423 - DDA3937_RS17765 0.17 +0.6
4,052,423 - DDA3937_RS17765 0.17 -3.0
4,052,423 - DDA3937_RS17765 0.17 -1.3
4,052,423 - DDA3937_RS17765 0.17 +0.8
4,052,423 - DDA3937_RS17765 0.17 +2.6
4,052,439 + DDA3937_RS17765 0.19 -0.1
4,052,439 + DDA3937_RS17765 0.19 -1.2
4,052,439 + DDA3937_RS17765 0.19 -0.8
4,052,439 + DDA3937_RS17765 0.19 +1.5
4,052,440 - DDA3937_RS17765 0.19 -1.6
4,052,440 - DDA3937_RS17765 0.19 +1.4
4,052,440 - DDA3937_RS17765 0.19 -0.6
4,052,440 - DDA3937_RS17765 0.19 +0.4
4,052,440 - DDA3937_RS17765 0.19 +0.9
4,052,633 - DDA3937_RS17765 0.42 +4.6
4,053,438 + DDA3937_RS17770 0.37 -3.0
4,053,438 + DDA3937_RS17770 0.37 +0.2
4,053,439 - -0.2
4,053,439 - DDA3937_RS17770 0.37 -2.3
4,053,867 + DDA3937_RS17770 0.87 +0.6
4,053,962 - -2.1
4,054,027 + -1.5
4,054,097 + -1.4
4,054,098 - -2.1
4,054,098 - -0.4
4,054,154 + DDA3937_RS17775 0.15 -1.4
4,054,154 + DDA3937_RS17775 0.15 -0.8
4,054,154 + DDA3937_RS17775 0.15 -1.5
4,054,155 - DDA3937_RS17775 0.15 -0.9
4,054,307 - DDA3937_RS17775 0.33 -0.4
4,054,420 + DDA3937_RS17775 0.45 -1.7
4,054,421 - DDA3937_RS17775 0.46 -0.6
4,054,421 - DDA3937_RS17775 0.46 -0.5
4,054,499 - DDA3937_RS17775 0.54 +0.9
4,054,511 + DDA3937_RS17775 0.56 +0.8
4,054,511 + DDA3937_RS17775 0.56 -1.2
4,054,512 - DDA3937_RS17775 0.56 -0.8
4,054,512 - DDA3937_RS17775 0.56 +0.1
4,054,528 + DDA3937_RS17775 0.58 +0.8
4,054,723 + DDA3937_RS17775 0.80 +0.2
4,054,723 + DDA3937_RS17775 0.80 -0.8
4,054,724 - DDA3937_RS17775 0.80 -0.6
4,054,724 - DDA3937_RS17775 0.80 -0.1
4,054,724 - DDA3937_RS17775 0.80 +0.5
4,054,846 + -0.8
4,054,847 - -0.1
4,054,847 - -1.7
4,054,898 - +0.3
4,054,915 + +0.2
4,054,916 - -0.0
4,054,916 - +0.1
4,054,916 - -0.9
4,054,916 - +0.8
4,054,926 - -1.4
4,054,946 - +0.2
4,054,949 + -1.1
4,054,950 - -0.3
4,054,950 - -0.8
4,054,968 + -1.1

Or see this region's nucleotide sequence