Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17700

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,036,263	-		DDA3937_RS17695	0.64	-0.1
4,036,317	+		DDA3937_RS17695	0.67	+0.4
4,036,318	-		DDA3937_RS17695	0.67	-0.2
4,036,441	+		DDA3937_RS17695	0.72	-0.3
4,036,442	-				+1.2
4,036,442	-		DDA3937_RS17695	0.72	-1.4
4,036,443	+		DDA3937_RS17695	0.72	-0.9
4,036,474	+		DDA3937_RS17695	0.73	-1.8
4,036,474	+		DDA3937_RS17695	0.73	-2.3
4,036,474	+		DDA3937_RS17695	0.73	-0.2
4,036,488	+		DDA3937_RS17695	0.74	-2.5
4,036,489	-		DDA3937_RS17695	0.74	-0.7
4,036,678	+		DDA3937_RS17695	0.82	-2.2
4,036,679	-		DDA3937_RS17695	0.82	-1.2
4,036,683	+		DDA3937_RS17695	0.82	+0.2
4,036,683	+		DDA3937_RS17695	0.82	+0.9
4,036,683	+		DDA3937_RS17695	0.82	+1.9
4,036,683	+		DDA3937_RS17695	0.82	-0.9
4,036,683	+		DDA3937_RS17695	0.82	-2.8
4,036,683	+		DDA3937_RS17695	0.82	-2.0
4,036,683	+		DDA3937_RS17695	0.82	+0.5
4,036,683	+		DDA3937_RS17695	0.82	-1.2
4,036,683	+		DDA3937_RS17695	0.82	-1.4
4,036,683	+		DDA3937_RS17695	0.82	-0.8
4,036,684	-		DDA3937_RS17695	0.82	-1.0
4,036,684	-		DDA3937_RS17695	0.82	-2.1
4,036,684	-		DDA3937_RS17695	0.82	+0.6
4,036,759	+		DDA3937_RS17695	0.85	-1.0
4,036,759	+		DDA3937_RS17695	0.85	-0.2
4,036,759	+		DDA3937_RS17695	0.85	-2.5
4,036,760	-		DDA3937_RS17695	0.85	-1.6
4,036,760	-		DDA3937_RS17695	0.85	+1.4
4,036,760	-		DDA3937_RS17695	0.85	-0.7
4,036,762	+		DDA3937_RS17695	0.85	-0.5
4,036,762	+		DDA3937_RS17695	0.85	+0.7
4,036,763	-		DDA3937_RS17695	0.85	+0.2
4,036,815	+		DDA3937_RS17695	0.87	+0.6
4,036,869	+		DDA3937_RS17695	0.90	-0.2
4,037,023	+				-1.1
4,037,042	+				+0.8
4,037,043	-				-0.8
4,037,181	+				-0.2
4,037,181	+				+1.2
4,037,186	+				-1.8
4,037,186	+				-0.0
4,037,374	-		DDA3937_RS17700	0.10	-0.8
4,037,432	-		DDA3937_RS17700	0.16	+0.4
4,037,536	-		DDA3937_RS17700	0.25	-0.5
4,037,560	-		DDA3937_RS17700	0.27	-1.2
4,037,788	-		DDA3937_RS17700	0.47	-0.8
4,038,023	-		DDA3937_RS17700	0.68	-1.6
4,038,189	-		DDA3937_RS17700	0.83	-2.0
4,038,323	-				-0.2
4,038,370	+				+0.6
4,038,371	+				-0.8
4,038,371	+				-1.5
4,038,372	-				-1.6
4,038,373	+				-1.0
4,038,373	+				+0.4
4,038,373	+				-0.2
4,038,373	+				-0.6
4,038,374	-				-0.2
4,038,374	-				-0.2
4,038,374	-				-0.2
4,038,374	-				-1.8
4,038,374	-				+0.8
4,038,379	+				-0.6
4,038,379	+				-0.2
4,038,380	-				+5.1
4,038,380	-				-0.0
4,038,380	-				-0.4
4,038,380	-				-1.7
4,038,383	+				-1.0
4,038,384	-				-1.4
4,038,412	+				-1.6
4,038,452	+		DDA3937_RS17705	0.11	+0.2
4,038,474	-		DDA3937_RS17705	0.15	-0.4
4,038,474	-		DDA3937_RS17705	0.15	+2.7
4,038,496	+		DDA3937_RS17705	0.18	-0.6
4,038,496	+		DDA3937_RS17705	0.18	-1.7
4,038,496	+		DDA3937_RS17705	0.18	-2.1
4,038,496	+		DDA3937_RS17705	0.18	+2.2
4,038,577	+		DDA3937_RS17705	0.30	+0.7
4,038,578	-		DDA3937_RS17705	0.30	-0.7
4,038,578	-		DDA3937_RS17705	0.30	+0.8
4,038,581	+		DDA3937_RS17705	0.30	-1.1
4,038,581	+		DDA3937_RS17705	0.30	-2.0
4,038,581	+		DDA3937_RS17705	0.30	-0.0
4,038,581	+		DDA3937_RS17705	0.30	-0.9
4,038,581	+		DDA3937_RS17705	0.30	-0.8
4,038,581	+		DDA3937_RS17705	0.30	+0.1
4,038,581	+		DDA3937_RS17705	0.30	-1.7
4,038,581	+		DDA3937_RS17705	0.30	-2.3
4,038,581	+		DDA3937_RS17705	0.30	-0.8
4,038,581	+		DDA3937_RS17705	0.30	+2.5
4,038,581	+		DDA3937_RS17705	0.30	+2.5
4,038,581	+		DDA3937_RS17705	0.30	-1.2
4,038,581	+		DDA3937_RS17705	0.30	-0.8
4,038,581	+		DDA3937_RS17705	0.30	-1.0
4,038,581	+		DDA3937_RS17705	0.30	+0.4
4,038,581	+		DDA3937_RS17705	0.30	-1.2
4,038,582	-		DDA3937_RS17705	0.31	-1.0
4,038,582	-		DDA3937_RS17705	0.31	-0.0
4,038,582	-		DDA3937_RS17705	0.31	-1.1
4,038,582	-		DDA3937_RS17705	0.31	-0.9
4,038,582	-		DDA3937_RS17705	0.31	-0.1
4,038,582	-		DDA3937_RS17705	0.31	-1.5
4,038,582	-		DDA3937_RS17705	0.31	-1.8
4,038,582	-		DDA3937_RS17705	0.31	-1.0
4,038,582	-		DDA3937_RS17705	0.31	-0.6
4,038,582	-		DDA3937_RS17705	0.31	-1.4
4,038,582	-		DDA3937_RS17705	0.31	+2.0
4,038,582	-		DDA3937_RS17705	0.31	+1.4
4,038,583	+		DDA3937_RS17705	0.31	+0.1
4,038,584	-		DDA3937_RS17705	0.31	+0.2
4,038,584	-		DDA3937_RS17705	0.31	-0.2
4,038,584	-		DDA3937_RS17705	0.31	-0.8
4,038,603	-		DDA3937_RS17705	0.34	-1.2
4,038,603	-		DDA3937_RS17705	0.34	-0.5
4,038,603	-		DDA3937_RS17705	0.34	-0.1
4,038,606	-		DDA3937_RS17705	0.34	-0.5
4,038,606	-		DDA3937_RS17705	0.34	-1.4
4,038,639	+		DDA3937_RS17705	0.39	+2.2
4,038,640	-		DDA3937_RS17705	0.39	-4.5
4,038,675	+		DDA3937_RS17705	0.44	-1.3
4,038,675	+		DDA3937_RS17705	0.44	+0.2
4,038,675	+		DDA3937_RS17705	0.44	+0.8
4,038,675	+		DDA3937_RS17705	0.44	-0.8
4,038,675	+		DDA3937_RS17705	0.44	-0.2
4,038,676	-		DDA3937_RS17705	0.44	-1.2
4,038,676	-		DDA3937_RS17705	0.44	-2.0
4,038,676	-		DDA3937_RS17705	0.44	-0.9
4,038,676	-		DDA3937_RS17705	0.44	-1.2
4,038,679	+		DDA3937_RS17705	0.45	-1.9
4,038,679	+		DDA3937_RS17705	0.45	+1.3
4,038,680	-		DDA3937_RS17705	0.45	-0.1
4,038,693	-		DDA3937_RS17705	0.47	+0.3
4,038,742	+		DDA3937_RS17705	0.54	-0.8
4,038,743	-		DDA3937_RS17705	0.54	-2.8
4,038,743	-		DDA3937_RS17705	0.54	+1.0
4,038,743	-		DDA3937_RS17705	0.54	-0.6
4,038,743	-		DDA3937_RS17705	0.54	+2.7
4,038,743	-		DDA3937_RS17705	0.54	+1.2
4,038,751	+		DDA3937_RS17705	0.55	+0.6
4,038,751	+		DDA3937_RS17705	0.55	-2.3
4,038,752	-		DDA3937_RS17705	0.56	-2.0
4,038,752	-		DDA3937_RS17705	0.56	+0.1
4,038,752	-		DDA3937_RS17705	0.56	+0.2
4,038,752	-		DDA3937_RS17705	0.56	-1.2
4,038,781	-		DDA3937_RS17705	0.60	+2.0
4,038,798	+		DDA3937_RS17705	0.62	-0.4
4,038,799	-		DDA3937_RS17705	0.62	-3.1
4,038,799	-		DDA3937_RS17705	0.62	-0.6
4,038,814	-		DDA3937_RS17705	0.65	+0.6
4,038,814	-		DDA3937_RS17705	0.65	-0.6
4,038,814	-		DDA3937_RS17705	0.65	-0.4
4,038,875	-		DDA3937_RS17705	0.74	-0.8
4,038,877	+		DDA3937_RS17705	0.74	-0.7
4,038,877	+		DDA3937_RS17705	0.74	-1.2
4,038,877	+		DDA3937_RS17705	0.74	-0.5
4,038,877	+		DDA3937_RS17705	0.74	+2.3
4,038,878	-		DDA3937_RS17705	0.74	+0.7
4,038,878	-		DDA3937_RS17705	0.74	-0.2
4,038,890	-		DDA3937_RS17705	0.76	-0.3
4,038,890	-		DDA3937_RS17705	0.76	+1.4
4,039,008	+				-0.6
4,039,008	+				+0.2
4,039,008	+				-1.6
4,039,008	+				+0.2
4,039,009	-				-0.4
4,039,012	+				-0.1
4,039,012	+				+1.8
4,039,041	+				-0.0
4,039,077	+				+2.2
4,039,288	+		DDA3937_RS17710	0.20	-0.8
4,039,304	-		DDA3937_RS17710	0.21	+0.8