Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16205

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS16195 and DDA3937_RS16200 are separated by 80 nucleotidesDDA3937_RS16200 and DDA3937_RS16205 overlap by 4 nucleotidesDDA3937_RS16205 and DDA3937_RS16210 are separated by 207 nucleotidesDDA3937_RS16210 and DDA3937_RS16215 are separated by 58 nucleotidesDDA3937_RS16215 and DDA3937_RS16220 are separated by 76 nucleotidesDDA3937_RS16220 and DDA3937_RS16225 are separated by 7 nucleotidesDDA3937_RS16225 and DDA3937_RS16230 are separated by 303 nucleotides DDA3937_RS16195: DDA3937_RS16195 - glutamate--cysteine ligase, at 3,695,549 to 3,697,102 _RS16195 DDA3937_RS16200: DDA3937_RS16200 - DedA family protein, at 3,697,183 to 3,697,611 _RS16200 DDA3937_RS16205: DDA3937_RS16205 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 3,697,608 to 3,698,174 _RS16205 DDA3937_RS16210: DDA3937_RS16210 - tRNA-Arg, at 3,698,382 to 3,698,458 _RS16210 DDA3937_RS16215: DDA3937_RS16215 - tRNA-Arg, at 3,698,517 to 3,698,593 _RS16215 DDA3937_RS16220: DDA3937_RS16220 - tRNA-Arg, at 3,698,670 to 3,698,746 _RS16220 DDA3937_RS16225: DDA3937_RS16225 - tRNA-Ser, at 3,698,754 to 3,698,846 _RS16225 DDA3937_RS16230: DDA3937_RS16230 - carbon storage regulator CsrA, at 3,699,150 to 3,699,335 _RS16230 Position (kb) 3697 3698 3699Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3696.650 kb on - strandat 3696.877 kb on + strand, within DDA3937_RS16195at 3696.931 kb on + strand, within DDA3937_RS16195at 3697.089 kb on - strandat 3697.126 kb on + strandat 3697.127 kb on - strandat 3697.136 kb on - strandat 3697.136 kb on - strandat 3697.136 kb on - strandat 3697.138 kb on + strandat 3697.139 kb on - strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.154 kb on + strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.155 kb on - strandat 3697.156 kb on + strandat 3697.156 kb on + strandat 3697.156 kb on + strandat 3697.156 kb on + strandat 3697.156 kb on + strandat 3697.157 kb on - strandat 3697.157 kb on - strandat 3697.157 kb on - strandat 3697.157 kb on - strandat 3697.157 kb on - strandat 3697.168 kb on - strandat 3697.177 kb on + strandat 3697.177 kb on + strandat 3697.177 kb on + strandat 3697.177 kb on + strandat 3697.178 kb on - strandat 3697.222 kb on + strandat 3697.222 kb on + strandat 3697.222 kb on + strandat 3697.222 kb on + strandat 3697.223 kb on - strandat 3697.223 kb on - strandat 3697.223 kb on - strandat 3697.226 kb on - strand, within DDA3937_RS16200at 3697.226 kb on - strand, within DDA3937_RS16200at 3697.226 kb on - strand, within DDA3937_RS16200at 3697.226 kb on - strand, within DDA3937_RS16200at 3697.232 kb on + strand, within DDA3937_RS16200at 3697.257 kb on + strand, within DDA3937_RS16200at 3697.258 kb on - strand, within DDA3937_RS16200at 3697.258 kb on - strand, within DDA3937_RS16200at 3697.258 kb on - strand, within DDA3937_RS16200at 3697.258 kb on - strand, within DDA3937_RS16200at 3697.261 kb on + strand, within DDA3937_RS16200at 3697.262 kb on - strand, within DDA3937_RS16200at 3697.262 kb on - strandat 3697.262 kb on - strand, within DDA3937_RS16200at 3697.264 kb on + strand, within DDA3937_RS16200at 3697.264 kb on + strand, within DDA3937_RS16200at 3697.265 kb on - strand, within DDA3937_RS16200at 3697.265 kb on - strand, within DDA3937_RS16200at 3697.288 kb on + strand, within DDA3937_RS16200at 3697.312 kb on + strand, within DDA3937_RS16200at 3697.312 kb on + strand, within DDA3937_RS16200at 3697.312 kb on + strand, within DDA3937_RS16200at 3697.312 kb on + strandat 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.313 kb on - strand, within DDA3937_RS16200at 3697.315 kb on - strand, within DDA3937_RS16200at 3697.338 kb on + strand, within DDA3937_RS16200at 3697.338 kb on + strand, within DDA3937_RS16200at 3697.339 kb on - strand, within DDA3937_RS16200at 3697.345 kb on + strand, within DDA3937_RS16200at 3697.345 kb on + strand, within DDA3937_RS16200at 3697.346 kb on - strand, within DDA3937_RS16200at 3697.407 kb on + strand, within DDA3937_RS16200at 3697.408 kb on - strand, within DDA3937_RS16200at 3697.437 kb on + strand, within DDA3937_RS16200at 3697.437 kb on + strand, within DDA3937_RS16200at 3697.437 kb on + strand, within DDA3937_RS16200at 3697.438 kb on - strand, within DDA3937_RS16200at 3697.458 kb on + strand, within DDA3937_RS16200at 3697.458 kb on + strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.459 kb on - strand, within DDA3937_RS16200at 3697.462 kb on - strand, within DDA3937_RS16200at 3697.476 kb on + strand, within DDA3937_RS16200at 3697.620 kb on + strandat 3697.621 kb on - strandat 3697.751 kb on + strand, within DDA3937_RS16205at 3697.752 kb on - strand, within DDA3937_RS16205at 3697.879 kb on + strand, within DDA3937_RS16205at 3697.879 kb on + strand, within DDA3937_RS16205at 3697.914 kb on + strand, within DDA3937_RS16205at 3697.914 kb on + strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.915 kb on - strand, within DDA3937_RS16205at 3697.968 kb on - strand, within DDA3937_RS16205at 3698.062 kb on + strand, within DDA3937_RS16205at 3698.063 kb on - strand, within DDA3937_RS16205at 3698.063 kb on - strandat 3698.069 kb on + strand, within DDA3937_RS16205at 3698.069 kb on + strand, within DDA3937_RS16205at 3698.070 kb on - strand, within DDA3937_RS16205at 3698.070 kb on - strand, within DDA3937_RS16205at 3698.070 kb on - strand, within DDA3937_RS16205at 3698.074 kb on + strand, within DDA3937_RS16205at 3698.074 kb on + strand, within DDA3937_RS16205at 3698.074 kb on + strand, within DDA3937_RS16205at 3698.085 kb on + strand, within DDA3937_RS16205at 3698.086 kb on - strand, within DDA3937_RS16205at 3698.086 kb on - strand, within DDA3937_RS16205at 3698.170 kb on + strandat 3698.171 kb on - strandat 3698.175 kb on + strandat 3698.175 kb on + strandat 3698.175 kb on + strandat 3698.175 kb on + strandat 3698.175 kb on + strandat 3698.176 kb on - strandat 3698.206 kb on + strandat 3698.273 kb on + strandat 3698.329 kb on - strandat 3698.432 kb on + strand, within DDA3937_RS16210at 3698.487 kb on + strandat 3698.488 kb on - strandat 3698.488 kb on - strandat 3698.606 kb on - strandat 3698.629 kb on - strandat 3698.654 kb on - strandat 3698.662 kb on - strandat 3698.662 kb on - strandat 3698.662 kb on - strandat 3698.667 kb on - strandat 3698.993 kb on - strandat 3699.012 kb on + strandat 3699.108 kb on + strandat 3699.108 kb on + strandat 3699.108 kb on + strandat 3699.109 kb on - strandat 3699.143 kb on + strandat 3699.154 kb on + strandat 3699.155 kb on - strandat 3699.155 kb on - strandat 3699.161 kb on + strandat 3699.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,696,650 - -1.0
3,696,877 + DDA3937_RS16195 0.85 +0.2
3,696,931 + DDA3937_RS16195 0.89 -0.7
3,697,089 - +0.6
3,697,126 + -0.2
3,697,127 - -0.8
3,697,136 - -0.1
3,697,136 - +0.3
3,697,136 - +0.6
3,697,138 + -1.6
3,697,139 - -1.6
3,697,154 + -0.7
3,697,154 + +0.7
3,697,154 + +0.7
3,697,154 + -0.0
3,697,154 + -0.4
3,697,154 + -0.0
3,697,154 + -0.4
3,697,155 - -0.2
3,697,155 - +0.6
3,697,155 - +0.3
3,697,155 - -1.7
3,697,155 - +0.2
3,697,155 - -0.3
3,697,155 - -0.9
3,697,155 - +1.0
3,697,156 + +0.8
3,697,156 + -2.8
3,697,156 + -1.4
3,697,156 + -0.2
3,697,156 + -1.2
3,697,157 - -0.9
3,697,157 - -1.6
3,697,157 - -0.0
3,697,157 - -0.6
3,697,157 - -1.6
3,697,168 - -0.3
3,697,177 + -1.6
3,697,177 + -1.1
3,697,177 + -1.0
3,697,177 + -0.7
3,697,178 - -1.4
3,697,222 + -1.2
3,697,222 + -0.5
3,697,222 + -1.6
3,697,222 + -0.0
3,697,223 - -1.2
3,697,223 - -1.3
3,697,223 - -0.4
3,697,226 - DDA3937_RS16200 0.10 +0.1
3,697,226 - DDA3937_RS16200 0.10 -2.2
3,697,226 - DDA3937_RS16200 0.10 -0.1
3,697,226 - DDA3937_RS16200 0.10 -1.5
3,697,232 + DDA3937_RS16200 0.11 -1.3
3,697,257 + DDA3937_RS16200 0.17 -1.9
3,697,258 - DDA3937_RS16200 0.17 +0.4
3,697,258 - DDA3937_RS16200 0.17 -0.8
3,697,258 - DDA3937_RS16200 0.17 -1.0
3,697,258 - DDA3937_RS16200 0.17 -1.9
3,697,261 + DDA3937_RS16200 0.18 -0.1
3,697,262 - DDA3937_RS16200 0.18 -0.3
3,697,262 - +0.6
3,697,262 - DDA3937_RS16200 0.18 -0.7
3,697,264 + DDA3937_RS16200 0.19 +1.3
3,697,264 + DDA3937_RS16200 0.19 -1.1
3,697,265 - DDA3937_RS16200 0.19 -1.5
3,697,265 - DDA3937_RS16200 0.19 +0.1
3,697,288 + DDA3937_RS16200 0.24 +0.6
3,697,312 + DDA3937_RS16200 0.30 -0.4
3,697,312 + DDA3937_RS16200 0.30 -1.3
3,697,312 + DDA3937_RS16200 0.30 +2.2
3,697,312 + +0.6
3,697,313 - DDA3937_RS16200 0.30 -0.5
3,697,313 - DDA3937_RS16200 0.30 -1.3
3,697,313 - DDA3937_RS16200 0.30 +0.2
3,697,313 - DDA3937_RS16200 0.30 -1.0
3,697,313 - DDA3937_RS16200 0.30 -0.2
3,697,313 - DDA3937_RS16200 0.30 -0.2
3,697,313 - DDA3937_RS16200 0.30 -1.2
3,697,313 - DDA3937_RS16200 0.30 -0.6
3,697,313 - DDA3937_RS16200 0.30 -1.0
3,697,313 - DDA3937_RS16200 0.30 -1.6
3,697,315 - DDA3937_RS16200 0.31 -2.3
3,697,338 + DDA3937_RS16200 0.36 +1.6
3,697,338 + DDA3937_RS16200 0.36 +1.6
3,697,339 - DDA3937_RS16200 0.36 -2.5
3,697,345 + DDA3937_RS16200 0.38 -0.4
3,697,345 + DDA3937_RS16200 0.38 -1.1
3,697,346 - DDA3937_RS16200 0.38 +0.6
3,697,407 + DDA3937_RS16200 0.52 +0.8
3,697,408 - DDA3937_RS16200 0.52 -1.7
3,697,437 + DDA3937_RS16200 0.59 -1.0
3,697,437 + DDA3937_RS16200 0.59 -0.7
3,697,437 + DDA3937_RS16200 0.59 -0.6
3,697,438 - DDA3937_RS16200 0.59 -1.4
3,697,458 + DDA3937_RS16200 0.64 -0.4
3,697,458 + DDA3937_RS16200 0.64 -1.5
3,697,459 - DDA3937_RS16200 0.64 +3.4
3,697,459 - DDA3937_RS16200 0.64 -0.7
3,697,459 - DDA3937_RS16200 0.64 -1.2
3,697,459 - DDA3937_RS16200 0.64 -0.9
3,697,459 - DDA3937_RS16200 0.64 -0.4
3,697,459 - DDA3937_RS16200 0.64 +0.3
3,697,459 - DDA3937_RS16200 0.64 -0.1
3,697,462 - DDA3937_RS16200 0.65 +0.3
3,697,476 + DDA3937_RS16200 0.68 -1.6
3,697,620 + -1.9
3,697,621 - -0.2
3,697,751 + DDA3937_RS16205 0.25 -0.2
3,697,752 - DDA3937_RS16205 0.25 -1.1
3,697,879 + DDA3937_RS16205 0.48 -1.3
3,697,879 + DDA3937_RS16205 0.48 -1.4
3,697,914 + DDA3937_RS16205 0.54 -0.4
3,697,914 + DDA3937_RS16205 0.54 +0.6
3,697,915 - DDA3937_RS16205 0.54 +1.0
3,697,915 - DDA3937_RS16205 0.54 -1.2
3,697,915 - DDA3937_RS16205 0.54 +0.6
3,697,915 - DDA3937_RS16205 0.54 -0.9
3,697,915 - DDA3937_RS16205 0.54 -0.7
3,697,915 - DDA3937_RS16205 0.54 -2.1
3,697,968 - DDA3937_RS16205 0.63 +0.4
3,698,062 + DDA3937_RS16205 0.80 +0.6
3,698,063 - DDA3937_RS16205 0.80 -0.7
3,698,063 - -0.0
3,698,069 + DDA3937_RS16205 0.81 -0.4
3,698,069 + DDA3937_RS16205 0.81 -0.7
3,698,070 - DDA3937_RS16205 0.81 -0.0
3,698,070 - DDA3937_RS16205 0.81 +1.5
3,698,070 - DDA3937_RS16205 0.81 +0.7
3,698,074 + DDA3937_RS16205 0.82 -1.2
3,698,074 + DDA3937_RS16205 0.82 -0.0
3,698,074 + DDA3937_RS16205 0.82 -2.0
3,698,085 + DDA3937_RS16205 0.84 -1.5
3,698,086 - DDA3937_RS16205 0.84 +0.3
3,698,086 - DDA3937_RS16205 0.84 -1.1
3,698,170 + +3.2
3,698,171 - -2.7
3,698,175 + +0.3
3,698,175 + -0.6
3,698,175 + +0.6
3,698,175 + -1.7
3,698,175 + +0.4
3,698,176 - +1.3
3,698,206 + -1.2
3,698,273 + -0.7
3,698,329 - -0.7
3,698,432 + DDA3937_RS16210 0.65 +0.6
3,698,487 + -0.5
3,698,488 - +0.6
3,698,488 - +0.8
3,698,606 - -0.0
3,698,629 - +0.2
3,698,654 - -1.4
3,698,662 - +0.4
3,698,662 - +1.0
3,698,662 - -1.2
3,698,667 - -0.4
3,698,993 - +1.9
3,699,012 + +0.4
3,699,108 + -0.7
3,699,108 + -1.2
3,699,108 + +1.0
3,699,109 - -2.9
3,699,143 + +1.4
3,699,154 + -1.6
3,699,155 - -1.4
3,699,155 - +0.1
3,699,161 + +1.2
3,699,162 - +0.4

Or see this region's nucleotide sequence