Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15960

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS15950 and DDA3937_RS15955 are separated by 160 nucleotidesDDA3937_RS15955 and DDA3937_RS15960 are separated by 15 nucleotidesDDA3937_RS15960 and DDA3937_RS15965 are separated by 25 nucleotidesDDA3937_RS15965 and DDA3937_RS15970 are separated by 69 nucleotides DDA3937_RS15950: DDA3937_RS15950 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 3,649,970 to 3,650,458 _RS15950 DDA3937_RS15955: DDA3937_RS15955 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,650,619 to 3,651,413 _RS15955 DDA3937_RS15960: DDA3937_RS15960 - pantoate--beta-alanine ligase, at 3,651,429 to 3,652,283 _RS15960 DDA3937_RS15965: DDA3937_RS15965 - aspartate 1-decarboxylase, at 3,652,309 to 3,652,689 _RS15965 DDA3937_RS15970: DDA3937_RS15970 - ABC transporter permease, at 3,652,759 to 3,653,529 _RS15970 Position (kb) 3651 3652 3653Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3650.526 kb on + strandat 3650.532 kb on + strandat 3650.539 kb on - strandat 3650.569 kb on + strandat 3650.570 kb on - strandat 3650.570 kb on - strandat 3650.570 kb on - strandat 3650.634 kb on - strandat 3650.691 kb on + strandat 3650.691 kb on + strandat 3650.692 kb on - strandat 3650.713 kb on + strand, within DDA3937_RS15955at 3650.714 kb on - strand, within DDA3937_RS15955at 3650.762 kb on + strand, within DDA3937_RS15955at 3650.770 kb on + strand, within DDA3937_RS15955at 3650.810 kb on + strand, within DDA3937_RS15955at 3650.879 kb on + strand, within DDA3937_RS15955at 3650.880 kb on - strand, within DDA3937_RS15955at 3650.942 kb on + strand, within DDA3937_RS15955at 3650.942 kb on + strand, within DDA3937_RS15955at 3650.943 kb on - strand, within DDA3937_RS15955at 3650.943 kb on - strand, within DDA3937_RS15955at 3650.945 kb on + strandat 3650.945 kb on + strand, within DDA3937_RS15955at 3650.945 kb on + strand, within DDA3937_RS15955at 3650.945 kb on + strand, within DDA3937_RS15955at 3650.946 kb on - strand, within DDA3937_RS15955at 3650.946 kb on - strand, within DDA3937_RS15955at 3650.946 kb on - strand, within DDA3937_RS15955at 3650.990 kb on + strand, within DDA3937_RS15955at 3650.990 kb on + strand, within DDA3937_RS15955at 3650.991 kb on - strand, within DDA3937_RS15955at 3650.991 kb on - strand, within DDA3937_RS15955at 3650.991 kb on - strand, within DDA3937_RS15955at 3650.991 kb on - strand, within DDA3937_RS15955at 3650.991 kb on - strand, within DDA3937_RS15955at 3651.053 kb on + strand, within DDA3937_RS15955at 3651.053 kb on + strand, within DDA3937_RS15955at 3651.054 kb on - strand, within DDA3937_RS15955at 3651.054 kb on - strand, within DDA3937_RS15955at 3651.066 kb on + strand, within DDA3937_RS15955at 3651.068 kb on + strand, within DDA3937_RS15955at 3651.068 kb on + strand, within DDA3937_RS15955at 3651.068 kb on + strand, within DDA3937_RS15955at 3651.068 kb on + strand, within DDA3937_RS15955at 3651.148 kb on + strand, within DDA3937_RS15955at 3651.206 kb on + strand, within DDA3937_RS15955at 3651.207 kb on - strand, within DDA3937_RS15955at 3651.294 kb on - strand, within DDA3937_RS15955at 3651.357 kb on + strandat 3651.357 kb on + strandat 3651.357 kb on + strandat 3651.357 kb on + strandat 3651.357 kb on + strandat 3651.358 kb on - strandat 3651.358 kb on - strandat 3651.358 kb on - strandat 3651.400 kb on - strandat 3651.400 kb on - strandat 3651.412 kb on - strandat 3651.723 kb on + strand, within DDA3937_RS15960at 3651.760 kb on + strand, within DDA3937_RS15960at 3651.930 kb on + strand, within DDA3937_RS15960at 3651.931 kb on - strand, within DDA3937_RS15960at 3652.063 kb on + strand, within DDA3937_RS15960at 3652.063 kb on + strand, within DDA3937_RS15960at 3652.064 kb on - strand, within DDA3937_RS15960at 3652.064 kb on - strand, within DDA3937_RS15960at 3652.100 kb on + strand, within DDA3937_RS15960at 3652.100 kb on + strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.101 kb on - strand, within DDA3937_RS15960at 3652.156 kb on + strand, within DDA3937_RS15960at 3652.156 kb on + strand, within DDA3937_RS15960at 3652.156 kb on + strand, within DDA3937_RS15960at 3652.157 kb on - strandat 3652.157 kb on - strand, within DDA3937_RS15960at 3652.157 kb on - strand, within DDA3937_RS15960at 3652.160 kb on + strandat 3652.160 kb on + strand, within DDA3937_RS15960at 3652.161 kb on - strand, within DDA3937_RS15960at 3652.180 kb on + strand, within DDA3937_RS15960at 3652.180 kb on + strand, within DDA3937_RS15960at 3652.181 kb on - strand, within DDA3937_RS15960at 3652.332 kb on + strandat 3652.332 kb on + strandat 3652.332 kb on + strandat 3652.332 kb on + strandat 3652.332 kb on + strandat 3652.333 kb on - strandat 3652.333 kb on - strandat 3652.353 kb on - strand, within DDA3937_RS15965at 3652.353 kb on - strand, within DDA3937_RS15965at 3652.368 kb on - strand, within DDA3937_RS15965at 3652.372 kb on + strand, within DDA3937_RS15965at 3652.372 kb on + strand, within DDA3937_RS15965at 3652.372 kb on + strand, within DDA3937_RS15965at 3652.372 kb on + strand, within DDA3937_RS15965at 3652.373 kb on - strand, within DDA3937_RS15965at 3652.373 kb on - strand, within DDA3937_RS15965at 3652.373 kb on - strand, within DDA3937_RS15965at 3652.373 kb on - strand, within DDA3937_RS15965at 3652.405 kb on - strand, within DDA3937_RS15965at 3652.419 kb on + strand, within DDA3937_RS15965at 3652.429 kb on + strand, within DDA3937_RS15965at 3652.429 kb on + strand, within DDA3937_RS15965at 3652.447 kb on + strand, within DDA3937_RS15965at 3652.447 kb on + strand, within DDA3937_RS15965at 3652.448 kb on - strand, within DDA3937_RS15965at 3652.448 kb on - strand, within DDA3937_RS15965at 3652.480 kb on + strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.481 kb on - strand, within DDA3937_RS15965at 3652.512 kb on + strand, within DDA3937_RS15965at 3652.512 kb on + strand, within DDA3937_RS15965at 3652.576 kb on + strand, within DDA3937_RS15965at 3652.576 kb on + strand, within DDA3937_RS15965at 3652.576 kb on + strand, within DDA3937_RS15965at 3652.576 kb on + strand, within DDA3937_RS15965at 3652.577 kb on - strand, within DDA3937_RS15965at 3652.577 kb on - strand, within DDA3937_RS15965at 3652.577 kb on - strand, within DDA3937_RS15965at 3652.577 kb on - strand, within DDA3937_RS15965at 3652.580 kb on + strand, within DDA3937_RS15965at 3652.580 kb on + strand, within DDA3937_RS15965at 3652.580 kb on + strand, within DDA3937_RS15965at 3652.580 kb on + strandat 3652.580 kb on + strand, within DDA3937_RS15965at 3652.581 kb on - strand, within DDA3937_RS15965at 3652.581 kb on - strand, within DDA3937_RS15965at 3652.581 kb on - strand, within DDA3937_RS15965at 3652.581 kb on - strand, within DDA3937_RS15965at 3652.581 kb on - strandat 3652.581 kb on - strand, within DDA3937_RS15965at 3652.627 kb on + strand, within DDA3937_RS15965at 3652.649 kb on + strand, within DDA3937_RS15965at 3652.649 kb on + strand, within DDA3937_RS15965at 3652.649 kb on + strand, within DDA3937_RS15965at 3652.650 kb on - strand, within DDA3937_RS15965at 3652.650 kb on - strand, within DDA3937_RS15965at 3652.695 kb on + strandat 3652.760 kb on + strandat 3652.760 kb on + strandat 3652.808 kb on + strandat 3652.902 kb on + strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.903 kb on - strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.904 kb on + strand, within DDA3937_RS15970at 3652.905 kb on - strand, within DDA3937_RS15970at 3652.905 kb on - strand, within DDA3937_RS15970at 3652.905 kb on - strand, within DDA3937_RS15970at 3652.905 kb on - strand, within DDA3937_RS15970at 3652.964 kb on + strand, within DDA3937_RS15970at 3652.964 kb on + strand, within DDA3937_RS15970at 3652.965 kb on - strand, within DDA3937_RS15970at 3652.969 kb on + strand, within DDA3937_RS15970at 3652.970 kb on - strand, within DDA3937_RS15970at 3652.982 kb on + strand, within DDA3937_RS15970at 3653.205 kb on - strand, within DDA3937_RS15970at 3653.259 kb on + strand, within DDA3937_RS15970at 3653.260 kb on - strand, within DDA3937_RS15970at 3653.260 kb on - strand, within DDA3937_RS15970at 3653.260 kb on - strand, within DDA3937_RS15970

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,650,526 + -0.0
3,650,532 + +0.8
3,650,539 - +0.0
3,650,569 + +0.1
3,650,570 - +1.0
3,650,570 - -1.7
3,650,570 - -1.3
3,650,634 - +0.6
3,650,691 + -0.8
3,650,691 + -2.4
3,650,692 - -1.8
3,650,713 + DDA3937_RS15955 0.12 -2.6
3,650,714 - DDA3937_RS15955 0.12 -0.8
3,650,762 + DDA3937_RS15955 0.18 -1.8
3,650,770 + DDA3937_RS15955 0.19 -1.2
3,650,810 + DDA3937_RS15955 0.24 -2.4
3,650,879 + DDA3937_RS15955 0.33 -2.0
3,650,880 - DDA3937_RS15955 0.33 -1.2
3,650,942 + DDA3937_RS15955 0.41 -2.5
3,650,942 + DDA3937_RS15955 0.41 -0.9
3,650,943 - DDA3937_RS15955 0.41 -0.8
3,650,943 - DDA3937_RS15955 0.41 -1.7
3,650,945 + +0.6
3,650,945 + DDA3937_RS15955 0.41 -0.9
3,650,945 + DDA3937_RS15955 0.41 -2.7
3,650,945 + DDA3937_RS15955 0.41 -0.9
3,650,946 - DDA3937_RS15955 0.41 -2.0
3,650,946 - DDA3937_RS15955 0.41 -2.2
3,650,946 - DDA3937_RS15955 0.41 -1.8
3,650,990 + DDA3937_RS15955 0.47 -1.8
3,650,990 + DDA3937_RS15955 0.47 -1.8
3,650,991 - DDA3937_RS15955 0.47 -1.2
3,650,991 - DDA3937_RS15955 0.47 -0.3
3,650,991 - DDA3937_RS15955 0.47 -2.3
3,650,991 - DDA3937_RS15955 0.47 -1.2
3,650,991 - DDA3937_RS15955 0.47 -1.4
3,651,053 + DDA3937_RS15955 0.55 -2.6
3,651,053 + DDA3937_RS15955 0.55 -2.2
3,651,054 - DDA3937_RS15955 0.55 -2.2
3,651,054 - DDA3937_RS15955 0.55 -0.0
3,651,066 + DDA3937_RS15955 0.56 -1.6
3,651,068 + DDA3937_RS15955 0.56 -1.3
3,651,068 + DDA3937_RS15955 0.56 -1.4
3,651,068 + DDA3937_RS15955 0.56 -3.0
3,651,068 + DDA3937_RS15955 0.56 -2.8
3,651,148 + DDA3937_RS15955 0.67 -2.0
3,651,206 + DDA3937_RS15955 0.74 +1.2
3,651,207 - DDA3937_RS15955 0.74 -1.1
3,651,294 - DDA3937_RS15955 0.85 -2.4
3,651,357 + -2.2
3,651,357 + -1.9
3,651,357 + -2.8
3,651,357 + -0.8
3,651,357 + -2.0
3,651,358 - -1.9
3,651,358 - -1.8
3,651,358 - -1.2
3,651,400 - -1.6
3,651,400 - -2.7
3,651,412 - -0.9
3,651,723 + DDA3937_RS15960 0.34 -2.4
3,651,760 + DDA3937_RS15960 0.39 -1.3
3,651,930 + DDA3937_RS15960 0.59 -2.0
3,651,931 - DDA3937_RS15960 0.59 -0.0
3,652,063 + DDA3937_RS15960 0.74 -0.7
3,652,063 + DDA3937_RS15960 0.74 -0.6
3,652,064 - DDA3937_RS15960 0.74 -0.4
3,652,064 - DDA3937_RS15960 0.74 -2.1
3,652,100 + DDA3937_RS15960 0.78 -0.8
3,652,100 + DDA3937_RS15960 0.78 -0.4
3,652,101 - DDA3937_RS15960 0.79 -1.9
3,652,101 - DDA3937_RS15960 0.79 -1.3
3,652,101 - DDA3937_RS15960 0.79 +0.6
3,652,101 - DDA3937_RS15960 0.79 -0.4
3,652,101 - DDA3937_RS15960 0.79 +0.1
3,652,101 - DDA3937_RS15960 0.79 -1.2
3,652,156 + DDA3937_RS15960 0.85 +0.9
3,652,156 + DDA3937_RS15960 0.85 -1.8
3,652,156 + DDA3937_RS15960 0.85 -1.0
3,652,157 - -0.7
3,652,157 - DDA3937_RS15960 0.85 -2.3
3,652,157 - DDA3937_RS15960 0.85 -1.3
3,652,160 + +1.9
3,652,160 + DDA3937_RS15960 0.85 -1.9
3,652,161 - DDA3937_RS15960 0.86 -0.4
3,652,180 + DDA3937_RS15960 0.88 -1.9
3,652,180 + DDA3937_RS15960 0.88 -1.2
3,652,181 - DDA3937_RS15960 0.88 +0.3
3,652,332 + -1.0
3,652,332 + -0.6
3,652,332 + -2.8
3,652,332 + -2.1
3,652,332 + -2.1
3,652,333 - -0.5
3,652,333 - -0.7
3,652,353 - DDA3937_RS15965 0.12 -2.2
3,652,353 - DDA3937_RS15965 0.12 -1.9
3,652,368 - DDA3937_RS15965 0.15 -1.6
3,652,372 + DDA3937_RS15965 0.17 -0.2
3,652,372 + DDA3937_RS15965 0.17 +0.7
3,652,372 + DDA3937_RS15965 0.17 -1.5
3,652,372 + DDA3937_RS15965 0.17 -2.8
3,652,373 - DDA3937_RS15965 0.17 -1.5
3,652,373 - DDA3937_RS15965 0.17 -0.3
3,652,373 - DDA3937_RS15965 0.17 -1.7
3,652,373 - DDA3937_RS15965 0.17 -0.8
3,652,405 - DDA3937_RS15965 0.25 -0.7
3,652,419 + DDA3937_RS15965 0.29 -1.7
3,652,429 + DDA3937_RS15965 0.31 +0.4
3,652,429 + DDA3937_RS15965 0.31 -0.4
3,652,447 + DDA3937_RS15965 0.36 -1.3
3,652,447 + DDA3937_RS15965 0.36 -1.0
3,652,448 - DDA3937_RS15965 0.36 -1.7
3,652,448 - DDA3937_RS15965 0.36 -0.9
3,652,480 + DDA3937_RS15965 0.45 -1.1
3,652,481 - DDA3937_RS15965 0.45 -1.0
3,652,481 - DDA3937_RS15965 0.45 -1.7
3,652,481 - DDA3937_RS15965 0.45 -1.7
3,652,481 - DDA3937_RS15965 0.45 -0.2
3,652,481 - DDA3937_RS15965 0.45 -1.9
3,652,481 - DDA3937_RS15965 0.45 -2.4
3,652,481 - DDA3937_RS15965 0.45 -2.3
3,652,481 - DDA3937_RS15965 0.45 -3.1
3,652,512 + DDA3937_RS15965 0.53 -2.2
3,652,512 + DDA3937_RS15965 0.53 -0.9
3,652,576 + DDA3937_RS15965 0.70 -0.8
3,652,576 + DDA3937_RS15965 0.70 -0.2
3,652,576 + DDA3937_RS15965 0.70 -2.1
3,652,576 + DDA3937_RS15965 0.70 -0.6
3,652,577 - DDA3937_RS15965 0.70 -2.3
3,652,577 - DDA3937_RS15965 0.70 -1.2
3,652,577 - DDA3937_RS15965 0.70 -1.0
3,652,577 - DDA3937_RS15965 0.70 -2.8
3,652,580 + DDA3937_RS15965 0.71 -0.4
3,652,580 + DDA3937_RS15965 0.71 -0.4
3,652,580 + DDA3937_RS15965 0.71 -0.6
3,652,580 + +1.2
3,652,580 + DDA3937_RS15965 0.71 -2.1
3,652,581 - DDA3937_RS15965 0.71 +0.6
3,652,581 - DDA3937_RS15965 0.71 -1.4
3,652,581 - DDA3937_RS15965 0.71 -0.7
3,652,581 - DDA3937_RS15965 0.71 -1.0
3,652,581 - -0.4
3,652,581 - DDA3937_RS15965 0.71 -1.3
3,652,627 + DDA3937_RS15965 0.83 -2.9
3,652,649 + DDA3937_RS15965 0.89 -3.8
3,652,649 + DDA3937_RS15965 0.89 -1.2
3,652,649 + DDA3937_RS15965 0.89 -1.7
3,652,650 - DDA3937_RS15965 0.90 -0.9
3,652,650 - DDA3937_RS15965 0.90 -1.2
3,652,695 + -1.7
3,652,760 + -0.1
3,652,760 + -3.1
3,652,808 + -0.6
3,652,902 + DDA3937_RS15970 0.19 -2.1
3,652,903 - DDA3937_RS15970 0.19 -1.7
3,652,903 - DDA3937_RS15970 0.19 -1.3
3,652,903 - DDA3937_RS15970 0.19 -1.2
3,652,903 - DDA3937_RS15970 0.19 -0.4
3,652,903 - DDA3937_RS15970 0.19 +0.2
3,652,903 - DDA3937_RS15970 0.19 -1.6
3,652,903 - DDA3937_RS15970 0.19 +0.4
3,652,904 + DDA3937_RS15970 0.19 +0.3
3,652,904 + DDA3937_RS15970 0.19 +0.6
3,652,904 + DDA3937_RS15970 0.19 -1.7
3,652,904 + DDA3937_RS15970 0.19 -2.1
3,652,904 + DDA3937_RS15970 0.19 -0.4
3,652,904 + DDA3937_RS15970 0.19 -2.7
3,652,904 + DDA3937_RS15970 0.19 +0.1
3,652,904 + DDA3937_RS15970 0.19 -1.5
3,652,904 + DDA3937_RS15970 0.19 -2.6
3,652,905 - DDA3937_RS15970 0.19 -0.2
3,652,905 - DDA3937_RS15970 0.19 +0.5
3,652,905 - DDA3937_RS15970 0.19 -0.4
3,652,905 - DDA3937_RS15970 0.19 -1.0
3,652,964 + DDA3937_RS15970 0.27 -0.9
3,652,964 + DDA3937_RS15970 0.27 -1.4
3,652,965 - DDA3937_RS15970 0.27 +0.8
3,652,969 + DDA3937_RS15970 0.27 +0.3
3,652,970 - DDA3937_RS15970 0.27 +0.4
3,652,982 + DDA3937_RS15970 0.29 -0.7
3,653,205 - DDA3937_RS15970 0.58 -0.0
3,653,259 + DDA3937_RS15970 0.65 -0.1
3,653,260 - DDA3937_RS15970 0.65 -0.4
3,653,260 - DDA3937_RS15970 0.65 -1.3
3,653,260 - DDA3937_RS15970 0.65 +0.6

Or see this region's nucleotide sequence