Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15880 and DDA3937_RS15885 are separated by 118 nucleotides DDA3937_RS15885 and DDA3937_RS15890 are separated by 80 nucleotides
DDA3937_RS15880: DDA3937_RS15880 - IS110-like element ISEch4 family transposase, at 3,631,918 to 3,632,922
_RS15880
DDA3937_RS15885: DDA3937_RS15885 - iron-sulfur cluster insertion protein ErpA, at 3,633,041 to 3,633,385
_RS15885
DDA3937_RS15890: DDA3937_RS15890 - H(+)/Cl(-) exchange transporter ClcA, at 3,633,466 to 3,634,863
_RS15890
Position (kb)
3633
3634 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3632.607 kb on + strand, within DDA3937_RS15880 at 3632.989 kb on + strand at 3632.989 kb on + strand at 3632.989 kb on + strand at 3632.989 kb on + strand at 3632.989 kb on + strand at 3632.989 kb on + strand at 3633.441 kb on - strand at 3633.441 kb on - strand at 3633.543 kb on + strand at 3633.543 kb on + strand at 3633.544 kb on - strand at 3633.551 kb on + strand at 3633.551 kb on + strand at 3633.551 kb on + strand at 3633.552 kb on - strand at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.629 kb on + strand, within DDA3937_RS15890 at 3633.630 kb on - strand at 3633.630 kb on - strand, within DDA3937_RS15890 at 3633.630 kb on - strand, within DDA3937_RS15890 at 3633.792 kb on + strand, within DDA3937_RS15890 at 3633.792 kb on + strand, within DDA3937_RS15890 at 3633.793 kb on - strand, within DDA3937_RS15890 at 3633.850 kb on + strand, within DDA3937_RS15890 at 3633.850 kb on + strand, within DDA3937_RS15890 at 3633.850 kb on + strand, within DDA3937_RS15890 at 3633.851 kb on - strand, within DDA3937_RS15890 at 3633.851 kb on - strand, within DDA3937_RS15890 at 3633.851 kb on - strand, within DDA3937_RS15890 at 3633.902 kb on + strand, within DDA3937_RS15890 at 3634.121 kb on + strand, within DDA3937_RS15890 at 3634.121 kb on + strand, within DDA3937_RS15890 at 3634.121 kb on + strand, within DDA3937_RS15890 at 3634.122 kb on - strand, within DDA3937_RS15890 at 3634.122 kb on - strand, within DDA3937_RS15890 at 3634.122 kb on - strand, within DDA3937_RS15890 at 3634.215 kb on + strand, within DDA3937_RS15890
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,632,607 + DDA3937_RS15880 0.69 -1.2 3,632,989 + -0.4 3,632,989 + +0.9 3,632,989 + -1.6 3,632,989 + +0.6 3,632,989 + -0.7 3,632,989 + -0.3 3,633,441 - +1.5 3,633,441 - -0.4 3,633,543 + -2.9 3,633,543 + +0.0 3,633,544 - -0.5 3,633,551 + -0.2 3,633,551 + -0.3 3,633,551 + -1.8 3,633,552 - -2.1 3,633,629 + DDA3937_RS15890 0.12 -0.0 3,633,629 + DDA3937_RS15890 0.12 +0.7 3,633,629 + DDA3937_RS15890 0.12 +2.1 3,633,629 + DDA3937_RS15890 0.12 -0.4 3,633,629 + DDA3937_RS15890 0.12 -1.2 3,633,629 + DDA3937_RS15890 0.12 -1.2 3,633,629 + DDA3937_RS15890 0.12 -0.2 3,633,629 + DDA3937_RS15890 0.12 -0.5 3,633,629 + DDA3937_RS15890 0.12 -0.6 3,633,629 + DDA3937_RS15890 0.12 +0.6 3,633,630 - -0.0 3,633,630 - DDA3937_RS15890 0.12 -0.9 3,633,630 - DDA3937_RS15890 0.12 -0.4 3,633,792 + DDA3937_RS15890 0.23 +0.2 3,633,792 + DDA3937_RS15890 0.23 -2.1 3,633,793 - DDA3937_RS15890 0.23 +2.2 3,633,850 + DDA3937_RS15890 0.27 +0.2 3,633,850 + DDA3937_RS15890 0.27 +1.4 3,633,850 + DDA3937_RS15890 0.27 +0.2 3,633,851 - DDA3937_RS15890 0.28 +1.2 3,633,851 - DDA3937_RS15890 0.28 +1.0 3,633,851 - DDA3937_RS15890 0.28 +0.3 3,633,902 + DDA3937_RS15890 0.31 +0.5 3,634,121 + DDA3937_RS15890 0.47 -1.0 3,634,121 + DDA3937_RS15890 0.47 -1.2 3,634,121 + DDA3937_RS15890 0.47 -3.2 3,634,122 - DDA3937_RS15890 0.47 -0.4 3,634,122 - DDA3937_RS15890 0.47 -0.5 3,634,122 - DDA3937_RS15890 0.47 +0.4 3,634,215 + DDA3937_RS15890 0.54 -0.2
Or see this region's nucleotide sequence