Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15885

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS15880 and DDA3937_RS15885 are separated by 118 nucleotidesDDA3937_RS15885 and DDA3937_RS15890 are separated by 80 nucleotides DDA3937_RS15880: DDA3937_RS15880 - IS110-like element ISEch4 family transposase, at 3,631,918 to 3,632,922 _RS15880 DDA3937_RS15885: DDA3937_RS15885 - iron-sulfur cluster insertion protein ErpA, at 3,633,041 to 3,633,385 _RS15885 DDA3937_RS15890: DDA3937_RS15890 - H(+)/Cl(-) exchange transporter ClcA, at 3,633,466 to 3,634,863 _RS15890 Position (kb) 3633 3634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3632.607 kb on + strand, within DDA3937_RS15880at 3632.989 kb on + strandat 3632.989 kb on + strandat 3632.989 kb on + strandat 3632.989 kb on + strandat 3632.989 kb on + strandat 3632.989 kb on + strandat 3633.441 kb on - strandat 3633.441 kb on - strandat 3633.543 kb on + strandat 3633.543 kb on + strandat 3633.544 kb on - strandat 3633.551 kb on + strandat 3633.551 kb on + strandat 3633.551 kb on + strandat 3633.552 kb on - strandat 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.629 kb on + strand, within DDA3937_RS15890at 3633.630 kb on - strandat 3633.630 kb on - strand, within DDA3937_RS15890at 3633.630 kb on - strand, within DDA3937_RS15890at 3633.792 kb on + strand, within DDA3937_RS15890at 3633.792 kb on + strand, within DDA3937_RS15890at 3633.793 kb on - strand, within DDA3937_RS15890at 3633.850 kb on + strand, within DDA3937_RS15890at 3633.850 kb on + strand, within DDA3937_RS15890at 3633.850 kb on + strand, within DDA3937_RS15890at 3633.851 kb on - strand, within DDA3937_RS15890at 3633.851 kb on - strand, within DDA3937_RS15890at 3633.851 kb on - strand, within DDA3937_RS15890at 3633.902 kb on + strand, within DDA3937_RS15890at 3634.121 kb on + strand, within DDA3937_RS15890at 3634.121 kb on + strand, within DDA3937_RS15890at 3634.121 kb on + strand, within DDA3937_RS15890at 3634.122 kb on - strand, within DDA3937_RS15890at 3634.122 kb on - strand, within DDA3937_RS15890at 3634.122 kb on - strand, within DDA3937_RS15890at 3634.215 kb on + strand, within DDA3937_RS15890

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,632,607 + DDA3937_RS15880 0.69 -1.2
3,632,989 + -0.4
3,632,989 + +0.9
3,632,989 + -1.6
3,632,989 + +0.6
3,632,989 + -0.7
3,632,989 + -0.3
3,633,441 - +1.5
3,633,441 - -0.4
3,633,543 + -2.9
3,633,543 + +0.0
3,633,544 - -0.5
3,633,551 + -0.2
3,633,551 + -0.3
3,633,551 + -1.8
3,633,552 - -2.1
3,633,629 + DDA3937_RS15890 0.12 -0.0
3,633,629 + DDA3937_RS15890 0.12 +0.7
3,633,629 + DDA3937_RS15890 0.12 +2.1
3,633,629 + DDA3937_RS15890 0.12 -0.4
3,633,629 + DDA3937_RS15890 0.12 -1.2
3,633,629 + DDA3937_RS15890 0.12 -1.2
3,633,629 + DDA3937_RS15890 0.12 -0.2
3,633,629 + DDA3937_RS15890 0.12 -0.5
3,633,629 + DDA3937_RS15890 0.12 -0.6
3,633,629 + DDA3937_RS15890 0.12 +0.6
3,633,630 - -0.0
3,633,630 - DDA3937_RS15890 0.12 -0.9
3,633,630 - DDA3937_RS15890 0.12 -0.4
3,633,792 + DDA3937_RS15890 0.23 +0.2
3,633,792 + DDA3937_RS15890 0.23 -2.1
3,633,793 - DDA3937_RS15890 0.23 +2.2
3,633,850 + DDA3937_RS15890 0.27 +0.2
3,633,850 + DDA3937_RS15890 0.27 +1.4
3,633,850 + DDA3937_RS15890 0.27 +0.2
3,633,851 - DDA3937_RS15890 0.28 +1.2
3,633,851 - DDA3937_RS15890 0.28 +1.0
3,633,851 - DDA3937_RS15890 0.28 +0.3
3,633,902 + DDA3937_RS15890 0.31 +0.5
3,634,121 + DDA3937_RS15890 0.47 -1.0
3,634,121 + DDA3937_RS15890 0.47 -1.2
3,634,121 + DDA3937_RS15890 0.47 -3.2
3,634,122 - DDA3937_RS15890 0.47 -0.4
3,634,122 - DDA3937_RS15890 0.47 -0.5
3,634,122 - DDA3937_RS15890 0.47 +0.4
3,634,215 + DDA3937_RS15890 0.54 -0.2

Or see this region's nucleotide sequence