Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15365

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,525,396	-		DDA3937_RS15355	0.75	+1.5
3,525,425	+		DDA3937_RS15355	0.79	-1.5
3,525,426	-		DDA3937_RS15355	0.79	-1.0
3,525,428	+		DDA3937_RS15355	0.79	-0.6
3,525,429	-		DDA3937_RS15355	0.79	+1.6
3,525,429	-		DDA3937_RS15355	0.79	-1.5
3,525,429	-		DDA3937_RS15355	0.79	-1.3
3,525,429	-		DDA3937_RS15355	0.79	-2.4
3,525,446	+		DDA3937_RS15355	0.82	-0.2
3,525,446	+		DDA3937_RS15355	0.82	+2.7
3,525,446	+		DDA3937_RS15355	0.82	+0.6
3,525,447	-		DDA3937_RS15355	0.82	-0.0
3,525,447	-		DDA3937_RS15355	0.82	-2.7
3,525,447	-		DDA3937_RS15355	0.82	-1.0
3,525,447	-		DDA3937_RS15355	0.82	-1.1
3,525,447	-		DDA3937_RS15355	0.82	+1.0
3,525,447	-		DDA3937_RS15355	0.82	-2.4
3,525,447	-		DDA3937_RS15355	0.82	-0.6
3,525,447	-		DDA3937_RS15355	0.82	-1.9
3,525,485	+				+1.6
3,525,619	-				-0.9
3,525,662	-		DDA3937_RS15360	0.12	-0.9
3,525,696	+		DDA3937_RS15360	0.17	+0.2
3,525,704	-		DDA3937_RS15360	0.18	+0.4
3,525,762	+				+0.6
3,525,763	-		DDA3937_RS15360	0.27	+0.1
3,525,764	+		DDA3937_RS15360	0.27	+1.6
3,525,765	-		DDA3937_RS15360	0.28	-0.2
3,525,767	-		DDA3937_RS15360	0.28	+3.0
3,525,767	-		DDA3937_RS15360	0.28	-1.4
3,525,804	+		DDA3937_RS15360	0.33	-0.1
3,525,805	-		DDA3937_RS15360	0.33	-0.0
3,525,816	-		DDA3937_RS15360	0.35	-2.7
3,525,883	+		DDA3937_RS15360	0.45	-1.9
3,525,883	+		DDA3937_RS15360	0.45	-0.9
3,525,896	+		DDA3937_RS15360	0.47	-0.8
3,525,896	+		DDA3937_RS15360	0.47	+0.6
3,525,896	+				+0.6
3,525,897	-		DDA3937_RS15360	0.47	-0.1
3,525,897	-		DDA3937_RS15360	0.47	-2.2
3,525,899	-		DDA3937_RS15360	0.48	-1.6
3,525,899	-		DDA3937_RS15360	0.48	-0.3
3,525,908	+		DDA3937_RS15360	0.49	+1.1
3,525,909	-		DDA3937_RS15360	0.49	-0.0
3,525,909	-		DDA3937_RS15360	0.49	+1.2
3,525,910	+		DDA3937_RS15360	0.49	+0.6
3,525,910	+		DDA3937_RS15360	0.49	+0.6
3,525,911	-		DDA3937_RS15360	0.49	-0.8
3,525,923	+		DDA3937_RS15360	0.51	+0.4
3,525,924	-		DDA3937_RS15360	0.51	+1.1
3,525,924	-		DDA3937_RS15360	0.51	+0.1
3,525,996	+		DDA3937_RS15360	0.62	-1.0
3,526,000	+		DDA3937_RS15360	0.63	+0.7
3,526,001	-		DDA3937_RS15360	0.63	-1.4
3,526,001	-		DDA3937_RS15360	0.63	+1.2
3,526,001	-		DDA3937_RS15360	0.63	-1.2
3,526,002	+		DDA3937_RS15360	0.63	-1.0
3,526,003	-		DDA3937_RS15360	0.63	-0.0
3,526,003	-		DDA3937_RS15360	0.63	-0.1
3,526,006	-		DDA3937_RS15360	0.64	+0.6
3,526,006	-		DDA3937_RS15360	0.64	+1.8
3,526,006	-		DDA3937_RS15360	0.64	+0.3
3,526,042	+		DDA3937_RS15360	0.69	-1.2
3,526,064	-		DDA3937_RS15360	0.72	+0.8
3,526,095	-		DDA3937_RS15360	0.77	-0.1
3,526,095	-		DDA3937_RS15360	0.77	-1.8
3,526,157	+		DDA3937_RS15360	0.86	-0.5
3,526,157	+		DDA3937_RS15360	0.86	+1.8
3,526,158	-		DDA3937_RS15360	0.86	-0.0
3,526,158	-		DDA3937_RS15360	0.86	+0.3
3,526,161	+		DDA3937_RS15360	0.87	+0.6
3,526,161	+		DDA3937_RS15360	0.87	+2.0
3,526,161	+		DDA3937_RS15360	0.87	-0.7
3,526,161	+		DDA3937_RS15360	0.87	-0.3
3,526,186	-				-1.2
3,526,192	+				+0.3
3,526,198	+				-1.4
3,526,228	+				+0.6
3,526,228	+				-0.4
3,526,228	+				+1.6
3,526,228	+				-0.2
3,526,258	-				-2.0
3,526,258	-				-2.3
3,526,311	+				-1.3
3,526,312	-				-0.5
3,526,341	+		DDA3937_RS15365	0.16	-0.6
3,526,345	-		DDA3937_RS15365	0.17	-0.8
3,526,357	-		DDA3937_RS15365	0.20	-1.7
3,526,614	+		DDA3937_RS15365	0.86	-1.3
3,526,615	-		DDA3937_RS15365	0.86	-0.3
3,526,615	-		DDA3937_RS15365	0.86	-0.4
3,526,615	-		DDA3937_RS15365	0.86	-2.9
3,526,627	+		DDA3937_RS15365	0.89	-2.8
3,526,651	+				+0.1
3,526,747	+				+1.3
3,526,748	-				-0.3
3,526,748	-				+0.8
3,526,748	-				-2.7
3,526,748	-				-0.0
3,526,791	-				-1.1
3,526,798	-				-1.1
3,526,840	+				-0.4
3,526,841	-				-1.0
3,526,841	-				+1.0
3,526,841	-				-0.8
3,526,841	-				-2.2
3,526,867	+				+0.4
3,526,867	+				+1.1
3,526,867	+				+2.2
3,526,868	-				-0.3
3,526,868	-				-0.8
3,526,870	+				-0.4
3,526,871	-				+0.6
3,526,885	-				-1.0
3,526,896	+				-1.8
3,526,922	-				-1.0
3,526,972	+				+2.4
3,526,973	-				-2.3
3,526,973	-				-0.7
3,526,973	-				-1.7
3,526,973	-				+0.2
3,526,973	-				-1.9
3,526,973	-				+0.5
3,526,973	-				-1.8
3,526,973	-				+0.0
3,526,987	-				+1.5
3,526,987	-				-1.0
3,526,987	-				-0.8
3,527,010	+				+1.6
3,527,011	-				-0.6
3,527,027	+				-1.8
3,527,027	+				-0.8
3,527,048	+				+1.2
3,527,107	+		DDA3937_RS15370	0.16	+0.2
3,527,108	-		DDA3937_RS15370	0.16	+0.3
3,527,115	+		DDA3937_RS15370	0.17	-0.2
3,527,115	+		DDA3937_RS15370	0.17	+0.6
3,527,116	-		DDA3937_RS15370	0.18	-2.1
3,527,116	-		DDA3937_RS15370	0.18	-3.0
3,527,166	+		DDA3937_RS15370	0.25	-1.1
3,527,166	+		DDA3937_RS15370	0.25	-0.9
3,527,166	+		DDA3937_RS15370	0.25	-1.2
3,527,166	+		DDA3937_RS15370	0.25	+0.2
3,527,166	+		DDA3937_RS15370	0.25	-1.4
3,527,167	-		DDA3937_RS15370	0.25	-0.8
3,527,167	-				+2.0
3,527,167	-		DDA3937_RS15370	0.25	-1.8
3,527,167	-		DDA3937_RS15370	0.25	+0.9
3,527,168	+		DDA3937_RS15370	0.25	-1.2
3,527,169	-		DDA3937_RS15370	0.25	-1.9
3,527,169	-		DDA3937_RS15370	0.25	-1.6
3,527,204	+		DDA3937_RS15370	0.30	-0.3
3,527,310	+		DDA3937_RS15370	0.45	-0.2
3,527,311	-		DDA3937_RS15370	0.45	-1.0
3,527,311	-				-1.0
3,527,320	-		DDA3937_RS15370	0.46	+0.8
3,527,365	-				-0.8
3,527,378	-		DDA3937_RS15370	0.55	+1.3
3,527,463	+		DDA3937_RS15370	0.67	-1.5
3,527,468	+		DDA3937_RS15370	0.67	+0.1
3,527,513	+		DDA3937_RS15370	0.74	-0.2
3,527,513	+		DDA3937_RS15370	0.74	-1.5
3,527,514	-		DDA3937_RS15370	0.74	-1.2
3,527,549	-		DDA3937_RS15370	0.79	-0.8
3,527,625	+		DDA3937_RS15370	0.89	+1.3
3,527,625	+		DDA3937_RS15370	0.89	+0.3
3,527,626	-		DDA3937_RS15370	0.90	-0.6
3,527,626	-		DDA3937_RS15370	0.90	-0.8
3,527,627	+		DDA3937_RS15370	0.90	-0.0
3,527,627	+		DDA3937_RS15370	0.90	+0.3
3,527,627	+		DDA3937_RS15370	0.90	-0.4
3,527,627	+		DDA3937_RS15370	0.90	-1.0
3,527,627	+		DDA3937_RS15370	0.90	-1.9
3,527,628	-		DDA3937_RS15370	0.90	+1.6
3,527,628	-		DDA3937_RS15370	0.90	-2.6
3,527,651	+				-1.9
3,527,651	+				-0.8
3,527,651	+				-0.6
3,527,652	-				-1.4
3,527,654	+				+0.4