Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14530

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS14520 and DDA3937_RS14525 are separated by 86 nucleotidesDDA3937_RS14525 and DDA3937_RS14530 overlap by 4 nucleotidesDDA3937_RS14530 and DDA3937_RS14535 are separated by 189 nucleotidesDDA3937_RS14535 and DDA3937_RS14540 are separated by 69 nucleotides DDA3937_RS14520: DDA3937_RS14520 - AraC family transcriptional regulator, at 3,327,288 to 3,328,121 _RS14520 DDA3937_RS14525: DDA3937_RS14525 - AzlC family ABC transporter permease, at 3,328,208 to 3,328,954 _RS14525 DDA3937_RS14530: DDA3937_RS14530 - AzlD domain-containing protein, at 3,328,951 to 3,329,265 _RS14530 DDA3937_RS14535: DDA3937_RS14535 - organic hydroperoxide resistance protein, at 3,329,455 to 3,329,880 _RS14535 DDA3937_RS14540: DDA3937_RS14540 - glutathione S-transferase family protein, at 3,329,950 to 3,330,579 _RS14540 Position (kb) 3328 3329 3330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3327.955 kb on - strand, within DDA3937_RS14520at 3327.997 kb on + strand, within DDA3937_RS14520at 3328.110 kb on - strandat 3328.120 kb on - strandat 3328.120 kb on - strandat 3328.129 kb on + strandat 3328.129 kb on + strandat 3328.167 kb on + strandat 3328.167 kb on + strandat 3328.180 kb on + strandat 3328.181 kb on - strandat 3328.181 kb on - strandat 3328.181 kb on - strandat 3328.181 kb on - strandat 3328.233 kb on + strandat 3328.233 kb on + strandat 3328.233 kb on + strandat 3328.233 kb on + strandat 3328.506 kb on - strand, within DDA3937_RS14525at 3328.506 kb on - strand, within DDA3937_RS14525at 3328.506 kb on - strand, within DDA3937_RS14525at 3328.506 kb on - strand, within DDA3937_RS14525at 3328.632 kb on - strand, within DDA3937_RS14525at 3328.658 kb on + strand, within DDA3937_RS14525at 3328.658 kb on + strand, within DDA3937_RS14525at 3328.658 kb on + strand, within DDA3937_RS14525at 3328.674 kb on + strand, within DDA3937_RS14525at 3328.674 kb on + strand, within DDA3937_RS14525at 3328.674 kb on + strand, within DDA3937_RS14525at 3328.674 kb on + strand, within DDA3937_RS14525at 3328.759 kb on + strand, within DDA3937_RS14525at 3328.760 kb on - strand, within DDA3937_RS14525at 3328.845 kb on - strand, within DDA3937_RS14525at 3328.868 kb on - strand, within DDA3937_RS14525at 3328.868 kb on - strand, within DDA3937_RS14525at 3328.964 kb on + strandat 3328.964 kb on + strandat 3328.965 kb on - strandat 3328.965 kb on - strandat 3328.967 kb on + strandat 3328.967 kb on + strandat 3328.968 kb on - strandat 3328.968 kb on - strandat 3328.968 kb on - strandat 3328.992 kb on + strand, within DDA3937_RS14530at 3328.992 kb on + strand, within DDA3937_RS14530at 3328.993 kb on - strand, within DDA3937_RS14530at 3328.993 kb on - strand, within DDA3937_RS14530at 3328.996 kb on + strand, within DDA3937_RS14530at 3328.997 kb on - strand, within DDA3937_RS14530at 3329.065 kb on + strand, within DDA3937_RS14530at 3329.065 kb on + strand, within DDA3937_RS14530at 3329.066 kb on - strand, within DDA3937_RS14530at 3329.066 kb on - strand, within DDA3937_RS14530at 3329.156 kb on + strand, within DDA3937_RS14530at 3329.239 kb on + strandat 3329.263 kb on + strandat 3329.263 kb on + strandat 3329.264 kb on - strandat 3329.264 kb on - strandat 3329.264 kb on - strandat 3329.264 kb on - strandat 3329.346 kb on + strandat 3329.347 kb on - strandat 3329.347 kb on - strandat 3329.348 kb on + strandat 3329.349 kb on - strandat 3329.349 kb on - strandat 3329.349 kb on - strandat 3329.349 kb on - strandat 3329.349 kb on - strandat 3329.351 kb on + strandat 3329.351 kb on + strandat 3329.352 kb on - strandat 3329.352 kb on - strandat 3329.352 kb on - strandat 3329.352 kb on - strandat 3329.352 kb on - strandat 3329.378 kb on - strandat 3329.434 kb on + strandat 3329.434 kb on + strandat 3329.434 kb on + strandat 3329.434 kb on + strandat 3329.435 kb on - strandat 3329.456 kb on + strandat 3329.456 kb on + strandat 3329.457 kb on - strandat 3329.457 kb on - strandat 3329.457 kb on - strandat 3329.457 kb on - strandat 3329.481 kb on + strandat 3329.505 kb on - strand, within DDA3937_RS14535at 3329.568 kb on + strand, within DDA3937_RS14535at 3329.568 kb on + strand, within DDA3937_RS14535at 3329.568 kb on + strand, within DDA3937_RS14535at 3329.568 kb on + strand, within DDA3937_RS14535at 3329.569 kb on - strand, within DDA3937_RS14535at 3329.569 kb on - strand, within DDA3937_RS14535at 3329.569 kb on - strand, within DDA3937_RS14535at 3329.572 kb on + strand, within DDA3937_RS14535at 3329.572 kb on - strand, within DDA3937_RS14535at 3329.572 kb on - strand, within DDA3937_RS14535at 3329.572 kb on - strand, within DDA3937_RS14535at 3329.643 kb on + strand, within DDA3937_RS14535at 3329.643 kb on + strand, within DDA3937_RS14535at 3329.643 kb on + strand, within DDA3937_RS14535at 3329.644 kb on - strand, within DDA3937_RS14535at 3329.644 kb on - strand, within DDA3937_RS14535at 3329.644 kb on - strand, within DDA3937_RS14535at 3329.788 kb on + strand, within DDA3937_RS14535at 3329.789 kb on - strand, within DDA3937_RS14535at 3329.802 kb on + strand, within DDA3937_RS14535at 3329.803 kb on - strand, within DDA3937_RS14535at 3329.859 kb on - strandat 3329.863 kb on + strandat 3329.863 kb on + strandat 3329.863 kb on + strandat 3329.864 kb on - strandat 3329.864 kb on - strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.880 kb on + strandat 3329.881 kb on - strandat 3329.881 kb on - strandat 3329.881 kb on - strandat 3329.881 kb on - strandat 3329.918 kb on - strandat 3329.918 kb on - strandat 3329.925 kb on + strandat 3330.035 kb on + strand, within DDA3937_RS14540at 3330.051 kb on + strand, within DDA3937_RS14540at 3330.090 kb on + strand, within DDA3937_RS14540at 3330.091 kb on - strand, within DDA3937_RS14540at 3330.123 kb on + strand, within DDA3937_RS14540at 3330.143 kb on + strand, within DDA3937_RS14540at 3330.156 kb on - strand, within DDA3937_RS14540at 3330.188 kb on + strand, within DDA3937_RS14540at 3330.188 kb on + strand, within DDA3937_RS14540at 3330.188 kb on + strand, within DDA3937_RS14540at 3330.189 kb on - strand, within DDA3937_RS14540at 3330.189 kb on - strand, within DDA3937_RS14540at 3330.250 kb on + strand, within DDA3937_RS14540at 3330.253 kb on + strand, within DDA3937_RS14540at 3330.253 kb on + strand, within DDA3937_RS14540at 3330.254 kb on - strand, within DDA3937_RS14540at 3330.254 kb on - strand, within DDA3937_RS14540

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,327,955 - DDA3937_RS14520 0.80 -0.7
3,327,997 + DDA3937_RS14520 0.85 +0.8
3,328,110 - +1.1
3,328,120 - -0.9
3,328,120 - -1.1
3,328,129 + -1.3
3,328,129 + -0.4
3,328,167 + -0.6
3,328,167 + -0.6
3,328,180 + -1.7
3,328,181 - -0.9
3,328,181 - -0.2
3,328,181 - -0.0
3,328,181 - -0.6
3,328,233 + -0.6
3,328,233 + +0.3
3,328,233 + -0.4
3,328,233 + -2.5
3,328,506 - DDA3937_RS14525 0.40 -0.2
3,328,506 - DDA3937_RS14525 0.40 +0.8
3,328,506 - DDA3937_RS14525 0.40 -0.9
3,328,506 - DDA3937_RS14525 0.40 -0.9
3,328,632 - DDA3937_RS14525 0.57 -1.7
3,328,658 + DDA3937_RS14525 0.60 -1.2
3,328,658 + DDA3937_RS14525 0.60 -1.2
3,328,658 + DDA3937_RS14525 0.60 -1.4
3,328,674 + DDA3937_RS14525 0.62 -0.9
3,328,674 + DDA3937_RS14525 0.62 -0.9
3,328,674 + DDA3937_RS14525 0.62 -1.3
3,328,674 + DDA3937_RS14525 0.62 -0.6
3,328,759 + DDA3937_RS14525 0.74 -1.7
3,328,760 - DDA3937_RS14525 0.74 -1.1
3,328,845 - DDA3937_RS14525 0.85 +1.4
3,328,868 - DDA3937_RS14525 0.88 -1.2
3,328,868 - DDA3937_RS14525 0.88 -1.2
3,328,964 + -1.2
3,328,964 + -1.8
3,328,965 - -0.6
3,328,965 - -1.7
3,328,967 + +0.7
3,328,967 + +0.4
3,328,968 - -1.6
3,328,968 - -1.0
3,328,968 - +0.1
3,328,992 + DDA3937_RS14530 0.13 -0.6
3,328,992 + DDA3937_RS14530 0.13 -0.2
3,328,993 - DDA3937_RS14530 0.13 -1.7
3,328,993 - DDA3937_RS14530 0.13 -1.2
3,328,996 + DDA3937_RS14530 0.14 -1.5
3,328,997 - DDA3937_RS14530 0.15 +0.1
3,329,065 + DDA3937_RS14530 0.36 -1.6
3,329,065 + DDA3937_RS14530 0.36 -0.1
3,329,066 - DDA3937_RS14530 0.37 -2.0
3,329,066 - DDA3937_RS14530 0.37 -3.4
3,329,156 + DDA3937_RS14530 0.65 -1.0
3,329,239 + -1.6
3,329,263 + +1.0
3,329,263 + +0.6
3,329,264 - +0.0
3,329,264 - -0.6
3,329,264 - -1.2
3,329,264 - +0.1
3,329,346 + -1.3
3,329,347 - -1.1
3,329,347 - +0.8
3,329,348 + +1.6
3,329,349 - -0.9
3,329,349 - -3.0
3,329,349 - -1.4
3,329,349 - -0.4
3,329,349 - -0.2
3,329,351 + +1.1
3,329,351 + -2.4
3,329,352 - -1.0
3,329,352 - -1.9
3,329,352 - -0.9
3,329,352 - -0.3
3,329,352 - -1.4
3,329,378 - +0.2
3,329,434 + -0.9
3,329,434 + -0.7
3,329,434 + +1.4
3,329,434 + -1.2
3,329,435 - -0.2
3,329,456 + +2.0
3,329,456 + -1.9
3,329,457 - -1.3
3,329,457 - -0.3
3,329,457 - -0.9
3,329,457 - -0.2
3,329,481 + +0.8
3,329,505 - DDA3937_RS14535 0.12 -0.8
3,329,568 + DDA3937_RS14535 0.27 -1.4
3,329,568 + DDA3937_RS14535 0.27 +1.3
3,329,568 + DDA3937_RS14535 0.27 +2.4
3,329,568 + DDA3937_RS14535 0.27 -1.9
3,329,569 - DDA3937_RS14535 0.27 -0.5
3,329,569 - DDA3937_RS14535 0.27 -1.4
3,329,569 - DDA3937_RS14535 0.27 -0.4
3,329,572 + DDA3937_RS14535 0.27 -0.3
3,329,572 - DDA3937_RS14535 0.27 -0.9
3,329,572 - DDA3937_RS14535 0.27 -1.8
3,329,572 - DDA3937_RS14535 0.27 -0.9
3,329,643 + DDA3937_RS14535 0.44 -1.4
3,329,643 + DDA3937_RS14535 0.44 +1.4
3,329,643 + DDA3937_RS14535 0.44 +0.6
3,329,644 - DDA3937_RS14535 0.44 +0.8
3,329,644 - DDA3937_RS14535 0.44 -0.7
3,329,644 - DDA3937_RS14535 0.44 +2.8
3,329,788 + DDA3937_RS14535 0.78 -0.4
3,329,789 - DDA3937_RS14535 0.78 -0.1
3,329,802 + DDA3937_RS14535 0.81 +1.4
3,329,803 - DDA3937_RS14535 0.82 -0.9
3,329,859 - -1.7
3,329,863 + -0.9
3,329,863 + -1.3
3,329,863 + -0.4
3,329,864 - -0.9
3,329,864 - +0.9
3,329,880 + -1.8
3,329,880 + +1.9
3,329,880 + -1.4
3,329,880 + +0.8
3,329,880 + -2.1
3,329,880 + +0.4
3,329,880 + +0.8
3,329,880 + +0.2
3,329,881 - -0.2
3,329,881 - -0.5
3,329,881 - -0.7
3,329,881 - +1.3
3,329,918 - +2.3
3,329,918 - -0.4
3,329,925 + -0.6
3,330,035 + DDA3937_RS14540 0.13 +1.2
3,330,051 + DDA3937_RS14540 0.16 -1.9
3,330,090 + DDA3937_RS14540 0.22 -0.5
3,330,091 - DDA3937_RS14540 0.22 -1.1
3,330,123 + DDA3937_RS14540 0.27 -2.5
3,330,143 + DDA3937_RS14540 0.31 -1.2
3,330,156 - DDA3937_RS14540 0.33 -1.2
3,330,188 + DDA3937_RS14540 0.38 +2.2
3,330,188 + DDA3937_RS14540 0.38 -1.4
3,330,188 + DDA3937_RS14540 0.38 -0.9
3,330,189 - DDA3937_RS14540 0.38 -0.4
3,330,189 - DDA3937_RS14540 0.38 -1.9
3,330,250 + DDA3937_RS14540 0.48 -0.4
3,330,253 + DDA3937_RS14540 0.48 +1.7
3,330,253 + DDA3937_RS14540 0.48 +1.1
3,330,254 - DDA3937_RS14540 0.48 +1.0
3,330,254 - DDA3937_RS14540 0.48 +1.8

Or see this region's nucleotide sequence