Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS14520 and DDA3937_RS14525 are separated by 86 nucleotides DDA3937_RS14525 and DDA3937_RS14530 overlap by 4 nucleotides DDA3937_RS14530 and DDA3937_RS14535 are separated by 189 nucleotides DDA3937_RS14535 and DDA3937_RS14540 are separated by 69 nucleotides
DDA3937_RS14520: DDA3937_RS14520 - AraC family transcriptional regulator, at 3,327,288 to 3,328,121
_RS14520
DDA3937_RS14525: DDA3937_RS14525 - AzlC family ABC transporter permease, at 3,328,208 to 3,328,954
_RS14525
DDA3937_RS14530: DDA3937_RS14530 - AzlD domain-containing protein, at 3,328,951 to 3,329,265
_RS14530
DDA3937_RS14535: DDA3937_RS14535 - organic hydroperoxide resistance protein, at 3,329,455 to 3,329,880
_RS14535
DDA3937_RS14540: DDA3937_RS14540 - glutathione S-transferase family protein, at 3,329,950 to 3,330,579
_RS14540
Position (kb)
3328
3329
3330 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3327.955 kb on - strand, within DDA3937_RS14520 at 3327.997 kb on + strand, within DDA3937_RS14520 at 3328.110 kb on - strand at 3328.120 kb on - strand at 3328.120 kb on - strand at 3328.129 kb on + strand at 3328.129 kb on + strand at 3328.167 kb on + strand at 3328.167 kb on + strand at 3328.180 kb on + strand at 3328.181 kb on - strand at 3328.181 kb on - strand at 3328.181 kb on - strand at 3328.181 kb on - strand at 3328.233 kb on + strand at 3328.233 kb on + strand at 3328.233 kb on + strand at 3328.233 kb on + strand at 3328.506 kb on - strand, within DDA3937_RS14525 at 3328.506 kb on - strand, within DDA3937_RS14525 at 3328.506 kb on - strand, within DDA3937_RS14525 at 3328.506 kb on - strand, within DDA3937_RS14525 at 3328.632 kb on - strand, within DDA3937_RS14525 at 3328.658 kb on + strand, within DDA3937_RS14525 at 3328.658 kb on + strand, within DDA3937_RS14525 at 3328.658 kb on + strand, within DDA3937_RS14525 at 3328.674 kb on + strand, within DDA3937_RS14525 at 3328.674 kb on + strand, within DDA3937_RS14525 at 3328.674 kb on + strand, within DDA3937_RS14525 at 3328.674 kb on + strand, within DDA3937_RS14525 at 3328.759 kb on + strand, within DDA3937_RS14525 at 3328.760 kb on - strand, within DDA3937_RS14525 at 3328.845 kb on - strand, within DDA3937_RS14525 at 3328.868 kb on - strand, within DDA3937_RS14525 at 3328.868 kb on - strand, within DDA3937_RS14525 at 3328.964 kb on + strand at 3328.964 kb on + strand at 3328.965 kb on - strand at 3328.965 kb on - strand at 3328.967 kb on + strand at 3328.967 kb on + strand at 3328.968 kb on - strand at 3328.968 kb on - strand at 3328.968 kb on - strand at 3328.992 kb on + strand, within DDA3937_RS14530 at 3328.992 kb on + strand, within DDA3937_RS14530 at 3328.993 kb on - strand, within DDA3937_RS14530 at 3328.993 kb on - strand, within DDA3937_RS14530 at 3328.996 kb on + strand, within DDA3937_RS14530 at 3328.997 kb on - strand, within DDA3937_RS14530 at 3329.065 kb on + strand, within DDA3937_RS14530 at 3329.065 kb on + strand, within DDA3937_RS14530 at 3329.066 kb on - strand, within DDA3937_RS14530 at 3329.066 kb on - strand, within DDA3937_RS14530 at 3329.156 kb on + strand, within DDA3937_RS14530 at 3329.239 kb on + strand at 3329.263 kb on + strand at 3329.263 kb on + strand at 3329.264 kb on - strand at 3329.264 kb on - strand at 3329.264 kb on - strand at 3329.264 kb on - strand at 3329.346 kb on + strand at 3329.347 kb on - strand at 3329.347 kb on - strand at 3329.348 kb on + strand at 3329.349 kb on - strand at 3329.349 kb on - strand at 3329.349 kb on - strand at 3329.349 kb on - strand at 3329.349 kb on - strand at 3329.351 kb on + strand at 3329.351 kb on + strand at 3329.352 kb on - strand at 3329.352 kb on - strand at 3329.352 kb on - strand at 3329.352 kb on - strand at 3329.352 kb on - strand at 3329.378 kb on - strand at 3329.434 kb on + strand at 3329.434 kb on + strand at 3329.434 kb on + strand at 3329.434 kb on + strand at 3329.435 kb on - strand at 3329.456 kb on + strand at 3329.456 kb on + strand at 3329.457 kb on - strand at 3329.457 kb on - strand at 3329.457 kb on - strand at 3329.457 kb on - strand at 3329.481 kb on + strand at 3329.505 kb on - strand, within DDA3937_RS14535 at 3329.568 kb on + strand, within DDA3937_RS14535 at 3329.568 kb on + strand, within DDA3937_RS14535 at 3329.568 kb on + strand, within DDA3937_RS14535 at 3329.568 kb on + strand, within DDA3937_RS14535 at 3329.569 kb on - strand, within DDA3937_RS14535 at 3329.569 kb on - strand, within DDA3937_RS14535 at 3329.569 kb on - strand, within DDA3937_RS14535 at 3329.572 kb on + strand, within DDA3937_RS14535 at 3329.572 kb on - strand, within DDA3937_RS14535 at 3329.572 kb on - strand, within DDA3937_RS14535 at 3329.572 kb on - strand, within DDA3937_RS14535 at 3329.643 kb on + strand, within DDA3937_RS14535 at 3329.643 kb on + strand, within DDA3937_RS14535 at 3329.643 kb on + strand, within DDA3937_RS14535 at 3329.644 kb on - strand, within DDA3937_RS14535 at 3329.644 kb on - strand, within DDA3937_RS14535 at 3329.644 kb on - strand, within DDA3937_RS14535 at 3329.788 kb on + strand, within DDA3937_RS14535 at 3329.789 kb on - strand, within DDA3937_RS14535 at 3329.802 kb on + strand, within DDA3937_RS14535 at 3329.803 kb on - strand, within DDA3937_RS14535 at 3329.859 kb on - strand at 3329.863 kb on + strand at 3329.863 kb on + strand at 3329.863 kb on + strand at 3329.864 kb on - strand at 3329.864 kb on - strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.880 kb on + strand at 3329.881 kb on - strand at 3329.881 kb on - strand at 3329.881 kb on - strand at 3329.881 kb on - strand at 3329.918 kb on - strand at 3329.918 kb on - strand at 3329.925 kb on + strand at 3330.035 kb on + strand, within DDA3937_RS14540 at 3330.051 kb on + strand, within DDA3937_RS14540 at 3330.090 kb on + strand, within DDA3937_RS14540 at 3330.091 kb on - strand, within DDA3937_RS14540 at 3330.123 kb on + strand, within DDA3937_RS14540 at 3330.143 kb on + strand, within DDA3937_RS14540 at 3330.156 kb on - strand, within DDA3937_RS14540 at 3330.188 kb on + strand, within DDA3937_RS14540 at 3330.188 kb on + strand, within DDA3937_RS14540 at 3330.188 kb on + strand, within DDA3937_RS14540 at 3330.189 kb on - strand, within DDA3937_RS14540 at 3330.189 kb on - strand, within DDA3937_RS14540 at 3330.250 kb on + strand, within DDA3937_RS14540 at 3330.253 kb on + strand, within DDA3937_RS14540 at 3330.253 kb on + strand, within DDA3937_RS14540 at 3330.254 kb on - strand, within DDA3937_RS14540 at 3330.254 kb on - strand, within DDA3937_RS14540
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,327,955 - DDA3937_RS14520 0.80 -0.7 3,327,997 + DDA3937_RS14520 0.85 +0.8 3,328,110 - +1.1 3,328,120 - -0.9 3,328,120 - -1.1 3,328,129 + -1.3 3,328,129 + -0.4 3,328,167 + -0.6 3,328,167 + -0.6 3,328,180 + -1.7 3,328,181 - -0.9 3,328,181 - -0.2 3,328,181 - -0.0 3,328,181 - -0.6 3,328,233 + -0.6 3,328,233 + +0.3 3,328,233 + -0.4 3,328,233 + -2.5 3,328,506 - DDA3937_RS14525 0.40 -0.2 3,328,506 - DDA3937_RS14525 0.40 +0.8 3,328,506 - DDA3937_RS14525 0.40 -0.9 3,328,506 - DDA3937_RS14525 0.40 -0.9 3,328,632 - DDA3937_RS14525 0.57 -1.7 3,328,658 + DDA3937_RS14525 0.60 -1.2 3,328,658 + DDA3937_RS14525 0.60 -1.2 3,328,658 + DDA3937_RS14525 0.60 -1.4 3,328,674 + DDA3937_RS14525 0.62 -0.9 3,328,674 + DDA3937_RS14525 0.62 -0.9 3,328,674 + DDA3937_RS14525 0.62 -1.3 3,328,674 + DDA3937_RS14525 0.62 -0.6 3,328,759 + DDA3937_RS14525 0.74 -1.7 3,328,760 - DDA3937_RS14525 0.74 -1.1 3,328,845 - DDA3937_RS14525 0.85 +1.4 3,328,868 - DDA3937_RS14525 0.88 -1.2 3,328,868 - DDA3937_RS14525 0.88 -1.2 3,328,964 + -1.2 3,328,964 + -1.8 3,328,965 - -0.6 3,328,965 - -1.7 3,328,967 + +0.7 3,328,967 + +0.4 3,328,968 - -1.6 3,328,968 - -1.0 3,328,968 - +0.1 3,328,992 + DDA3937_RS14530 0.13 -0.6 3,328,992 + DDA3937_RS14530 0.13 -0.2 3,328,993 - DDA3937_RS14530 0.13 -1.7 3,328,993 - DDA3937_RS14530 0.13 -1.2 3,328,996 + DDA3937_RS14530 0.14 -1.5 3,328,997 - DDA3937_RS14530 0.15 +0.1 3,329,065 + DDA3937_RS14530 0.36 -1.6 3,329,065 + DDA3937_RS14530 0.36 -0.1 3,329,066 - DDA3937_RS14530 0.37 -2.0 3,329,066 - DDA3937_RS14530 0.37 -3.4 3,329,156 + DDA3937_RS14530 0.65 -1.0 3,329,239 + -1.6 3,329,263 + +1.0 3,329,263 + +0.6 3,329,264 - +0.0 3,329,264 - -0.6 3,329,264 - -1.2 3,329,264 - +0.1 3,329,346 + -1.3 3,329,347 - -1.1 3,329,347 - +0.8 3,329,348 + +1.6 3,329,349 - -0.9 3,329,349 - -3.0 3,329,349 - -1.4 3,329,349 - -0.4 3,329,349 - -0.2 3,329,351 + +1.1 3,329,351 + -2.4 3,329,352 - -1.0 3,329,352 - -1.9 3,329,352 - -0.9 3,329,352 - -0.3 3,329,352 - -1.4 3,329,378 - +0.2 3,329,434 + -0.9 3,329,434 + -0.7 3,329,434 + +1.4 3,329,434 + -1.2 3,329,435 - -0.2 3,329,456 + +2.0 3,329,456 + -1.9 3,329,457 - -1.3 3,329,457 - -0.3 3,329,457 - -0.9 3,329,457 - -0.2 3,329,481 + +0.8 3,329,505 - DDA3937_RS14535 0.12 -0.8 3,329,568 + DDA3937_RS14535 0.27 -1.4 3,329,568 + DDA3937_RS14535 0.27 +1.3 3,329,568 + DDA3937_RS14535 0.27 +2.4 3,329,568 + DDA3937_RS14535 0.27 -1.9 3,329,569 - DDA3937_RS14535 0.27 -0.5 3,329,569 - DDA3937_RS14535 0.27 -1.4 3,329,569 - DDA3937_RS14535 0.27 -0.4 3,329,572 + DDA3937_RS14535 0.27 -0.3 3,329,572 - DDA3937_RS14535 0.27 -0.9 3,329,572 - DDA3937_RS14535 0.27 -1.8 3,329,572 - DDA3937_RS14535 0.27 -0.9 3,329,643 + DDA3937_RS14535 0.44 -1.4 3,329,643 + DDA3937_RS14535 0.44 +1.4 3,329,643 + DDA3937_RS14535 0.44 +0.6 3,329,644 - DDA3937_RS14535 0.44 +0.8 3,329,644 - DDA3937_RS14535 0.44 -0.7 3,329,644 - DDA3937_RS14535 0.44 +2.8 3,329,788 + DDA3937_RS14535 0.78 -0.4 3,329,789 - DDA3937_RS14535 0.78 -0.1 3,329,802 + DDA3937_RS14535 0.81 +1.4 3,329,803 - DDA3937_RS14535 0.82 -0.9 3,329,859 - -1.7 3,329,863 + -0.9 3,329,863 + -1.3 3,329,863 + -0.4 3,329,864 - -0.9 3,329,864 - +0.9 3,329,880 + -1.8 3,329,880 + +1.9 3,329,880 + -1.4 3,329,880 + +0.8 3,329,880 + -2.1 3,329,880 + +0.4 3,329,880 + +0.8 3,329,880 + +0.2 3,329,881 - -0.2 3,329,881 - -0.5 3,329,881 - -0.7 3,329,881 - +1.3 3,329,918 - +2.3 3,329,918 - -0.4 3,329,925 + -0.6 3,330,035 + DDA3937_RS14540 0.13 +1.2 3,330,051 + DDA3937_RS14540 0.16 -1.9 3,330,090 + DDA3937_RS14540 0.22 -0.5 3,330,091 - DDA3937_RS14540 0.22 -1.1 3,330,123 + DDA3937_RS14540 0.27 -2.5 3,330,143 + DDA3937_RS14540 0.31 -1.2 3,330,156 - DDA3937_RS14540 0.33 -1.2 3,330,188 + DDA3937_RS14540 0.38 +2.2 3,330,188 + DDA3937_RS14540 0.38 -1.4 3,330,188 + DDA3937_RS14540 0.38 -0.9 3,330,189 - DDA3937_RS14540 0.38 -0.4 3,330,189 - DDA3937_RS14540 0.38 -1.9 3,330,250 + DDA3937_RS14540 0.48 -0.4 3,330,253 + DDA3937_RS14540 0.48 +1.7 3,330,253 + DDA3937_RS14540 0.48 +1.1 3,330,254 - DDA3937_RS14540 0.48 +1.0 3,330,254 - DDA3937_RS14540 0.48 +1.8
Or see this region's nucleotide sequence