Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14090

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,218,820	+		DDA3937_RS14085	0.66	-0.9
3,218,864	+		DDA3937_RS14085	0.68	-0.1
3,218,875	+		DDA3937_RS14085	0.68	-0.1
3,219,121	-		DDA3937_RS14085	0.78	+0.8
3,219,188	+		DDA3937_RS14085	0.80	+0.7
3,219,188	+		DDA3937_RS14085	0.80	+0.2
3,219,189	-		DDA3937_RS14085	0.80	-0.6
3,219,260	+		DDA3937_RS14085	0.83	-0.2
3,219,261	-		DDA3937_RS14085	0.83	-0.8
3,219,261	-		DDA3937_RS14085	0.83	-0.2
3,219,265	-		DDA3937_RS14085	0.83	-1.2
3,219,265	-		DDA3937_RS14085	0.83	-0.2
3,219,321	+				-1.2
3,219,321	+		DDA3937_RS14085	0.85	+0.1
3,219,321	+		DDA3937_RS14085	0.85	-1.0
3,219,321	+		DDA3937_RS14085	0.85	+3.1
3,219,322	-				-0.9
3,219,322	-		DDA3937_RS14085	0.85	+0.8
3,219,389	+		DDA3937_RS14085	0.88	-0.7
3,219,389	+		DDA3937_RS14085	0.88	-1.2
3,219,389	+		DDA3937_RS14085	0.88	+1.5
3,219,389	+		DDA3937_RS14085	0.88	-0.7
3,219,390	-		DDA3937_RS14085	0.88	+0.4
3,219,390	-		DDA3937_RS14085	0.88	+1.4
3,219,390	-		DDA3937_RS14085	0.88	-1.7
3,219,390	-		DDA3937_RS14085	0.88	-0.6
3,219,390	-		DDA3937_RS14085	0.88	+0.8
3,219,390	-		DDA3937_RS14085	0.88	+0.6
3,219,392	+		DDA3937_RS14085	0.88	-0.6
3,219,392	+		DDA3937_RS14085	0.88	-0.6
3,219,392	+		DDA3937_RS14085	0.88	-0.6
3,219,392	+		DDA3937_RS14085	0.88	-1.3
3,219,392	+		DDA3937_RS14085	0.88	-0.2
3,219,393	-		DDA3937_RS14085	0.88	+1.3
3,219,393	-		DDA3937_RS14085	0.88	-0.8
3,219,393	-		DDA3937_RS14085	0.88	-0.2
3,219,393	-		DDA3937_RS14085	0.88	-2.7
3,219,393	-		DDA3937_RS14085	0.88	-1.4
3,219,393	-		DDA3937_RS14085	0.88	-1.3
3,219,393	-		DDA3937_RS14085	0.88	-0.7
3,219,422	+		DDA3937_RS14085	0.89	-0.0
3,219,456	+				-1.2
3,219,456	+				-0.1
3,219,547	+				+0.8
3,219,547	+				-0.8
3,219,547	+				-0.9
3,219,548	-				-1.2
3,219,548	-				+1.3
3,219,767	+				-0.4
3,219,768	-				-0.5
3,219,768	-				+2.5
3,219,768	-				-0.3
3,219,768	-				+1.5
3,219,768	-				+0.4
3,219,768	-				-0.1
3,219,768	-				-1.8
3,219,768	-				+0.5
3,219,777	+				-1.4
3,219,777	+				+0.3
3,219,778	-				+0.2
3,219,961	-				+0.2
3,220,264	+		DDA3937_RS14090	0.13	-1.6
3,220,264	+		DDA3937_RS14090	0.13	+1.7
3,220,264	+		DDA3937_RS14090	0.13	-0.8
3,220,264	+		DDA3937_RS14090	0.13	+0.9
3,220,265	-		DDA3937_RS14090	0.13	+0.4
3,220,345	+		DDA3937_RS14090	0.15	-2.5
3,220,346	-		DDA3937_RS14090	0.15	-0.9
3,220,346	-		DDA3937_RS14090	0.15	+0.4
3,220,414	+		DDA3937_RS14090	0.17	+0.0
3,220,414	+		DDA3937_RS14090	0.17	+1.6
3,220,414	+		DDA3937_RS14090	0.17	+1.4
3,220,414	+		DDA3937_RS14090	0.17	+1.7
3,220,414	+		DDA3937_RS14090	0.17	-1.9
3,220,414	+		DDA3937_RS14090	0.17	+0.5
3,220,414	+		DDA3937_RS14090	0.17	-1.4
3,220,414	+		DDA3937_RS14090	0.17	-1.4
3,220,414	+		DDA3937_RS14090	0.17	+0.2
3,220,414	+		DDA3937_RS14090	0.17	-0.1
3,220,414	+		DDA3937_RS14090	0.17	-2.3
3,220,415	-		DDA3937_RS14090	0.17	-2.3
3,220,415	-		DDA3937_RS14090	0.17	-0.6
3,220,415	-		DDA3937_RS14090	0.17	-1.8
3,220,415	-		DDA3937_RS14090	0.17	-1.9
3,220,415	-		DDA3937_RS14090	0.17	-0.5
3,220,415	-		DDA3937_RS14090	0.17	-0.0
3,220,415	-		DDA3937_RS14090	0.17	-0.3
3,220,415	-		DDA3937_RS14090	0.17	-1.0
3,220,519	+		DDA3937_RS14090	0.19	+0.1
3,220,519	+		DDA3937_RS14090	0.19	-0.6
3,220,519	+		DDA3937_RS14090	0.19	-1.7
3,220,519	+		DDA3937_RS14090	0.19	-0.9
3,220,519	+		DDA3937_RS14090	0.19	-2.2
3,220,519	+		DDA3937_RS14090	0.19	-0.8
3,220,519	+		DDA3937_RS14090	0.19	+2.2
3,220,519	+		DDA3937_RS14090	0.19	-0.4
3,220,520	-		DDA3937_RS14090	0.19	-0.1
3,220,520	-		DDA3937_RS14090	0.19	-0.1
3,220,520	-		DDA3937_RS14090	0.19	-0.6
3,220,590	-		DDA3937_RS14090	0.21	-1.6
3,220,640	-		DDA3937_RS14090	0.22	-1.0
3,220,788	-		DDA3937_RS14090	0.26	+0.0
3,220,788	-		DDA3937_RS14090	0.26	-0.9
3,220,852	+		DDA3937_RS14090	0.27	-1.4
3,220,852	+		DDA3937_RS14090	0.27	-1.2
3,220,853	-		DDA3937_RS14090	0.27	-1.2
3,220,853	-		DDA3937_RS14090	0.27	-1.2
3,220,862	-		DDA3937_RS14090	0.28	-1.4
3,220,939	+		DDA3937_RS14090	0.29	-2.1
3,220,939	+		DDA3937_RS14090	0.29	-1.2
3,220,939	+		DDA3937_RS14090	0.29	-0.3
3,220,939	+				+1.4
3,220,940	-		DDA3937_RS14090	0.30	+2.3
3,220,982	+		DDA3937_RS14090	0.31	-1.8
3,220,982	+		DDA3937_RS14090	0.31	+0.4
3,220,983	-		DDA3937_RS14090	0.31	+0.2
3,220,995	+		DDA3937_RS14090	0.31	-0.6
3,220,995	+		DDA3937_RS14090	0.31	+0.1
3,220,995	+		DDA3937_RS14090	0.31	-0.6
3,220,995	+		DDA3937_RS14090	0.31	+0.9
3,221,013	+				-0.6
3,221,013	+		DDA3937_RS14090	0.31	-2.8
3,221,013	+		DDA3937_RS14090	0.31	+0.4
3,221,013	+		DDA3937_RS14090	0.31	-1.0
3,221,013	+		DDA3937_RS14090	0.31	+0.0
3,221,013	+		DDA3937_RS14090	0.31	-0.6
3,221,013	+		DDA3937_RS14090	0.31	-0.9
3,221,013	+		DDA3937_RS14090	0.31	-0.2
3,221,013	+		DDA3937_RS14090	0.31	-1.2
3,221,013	+				-0.9
3,221,014	-		DDA3937_RS14090	0.31	-1.2
3,221,014	-		DDA3937_RS14090	0.31	+0.8
3,221,014	-		DDA3937_RS14090	0.31	-0.1
3,221,014	-		DDA3937_RS14090	0.31	+0.6
3,221,014	-		DDA3937_RS14090	0.31	-0.3
3,221,014	-		DDA3937_RS14090	0.31	+0.0
3,221,014	-		DDA3937_RS14090	0.31	-0.5
3,221,014	-		DDA3937_RS14090	0.31	+0.6
3,221,014	-		DDA3937_RS14090	0.31	+0.4
3,221,014	-		DDA3937_RS14090	0.31	-0.6
3,221,014	-		DDA3937_RS14090	0.31	-3.7
3,221,017	+		DDA3937_RS14090	0.31	-2.9
3,221,017	+		DDA3937_RS14090	0.31	+0.4
3,221,017	+		DDA3937_RS14090	0.31	+0.4
3,221,018	-		DDA3937_RS14090	0.31	-0.9
3,221,018	-		DDA3937_RS14090	0.31	-0.5
3,221,018	-		DDA3937_RS14090	0.31	-1.3
3,221,143	+		DDA3937_RS14090	0.34	-2.3
3,221,144	-		DDA3937_RS14090	0.34	-2.4
3,221,144	-		DDA3937_RS14090	0.34	+0.6
3,221,144	-		DDA3937_RS14090	0.34	+0.1
3,221,191	-		DDA3937_RS14090	0.36	-1.4
3,221,219	-		DDA3937_RS14090	0.36	+0.2
3,221,274	-		DDA3937_RS14090	0.38	-2.5
3,221,274	-		DDA3937_RS14090	0.38	+1.8
3,221,276	+		DDA3937_RS14090	0.38	-0.9
3,221,276	+		DDA3937_RS14090	0.38	+0.2
3,221,277	-		DDA3937_RS14090	0.38	-0.4
3,221,277	-		DDA3937_RS14090	0.38	+0.2
3,221,494	+		DDA3937_RS14090	0.43	-0.1
3,221,494	+		DDA3937_RS14090	0.43	-1.4
3,221,495	-		DDA3937_RS14090	0.43	-0.3
3,221,566	+		DDA3937_RS14090	0.44	+3.0
3,221,567	-		DDA3937_RS14090	0.45	-0.0
3,221,567	-		DDA3937_RS14090	0.45	+0.1
3,221,596	+		DDA3937_RS14090	0.45	+0.2
3,221,607	-		DDA3937_RS14090	0.45	+0.2
3,221,656	-		DDA3937_RS14090	0.47	-1.6
3,221,766	+		DDA3937_RS14090	0.49	-0.3
3,221,807	+		DDA3937_RS14090	0.50	-0.5
3,221,808	-		DDA3937_RS14090	0.50	+0.8
3,221,863	-		DDA3937_RS14090	0.52	+0.9
3,221,863	-		DDA3937_RS14090	0.52	+0.8
3,221,923	-		DDA3937_RS14090	0.53	-0.4
3,222,108	+		DDA3937_RS14090	0.57	-1.9
3,222,109	-		DDA3937_RS14090	0.57	-1.4
3,222,230	+		DDA3937_RS14090	0.60	-1.2
3,222,244	+		DDA3937_RS14090	0.61	+0.1
3,222,244	+		DDA3937_RS14090	0.61	-0.8
3,222,245	-		DDA3937_RS14090	0.61	-0.9
3,222,246	+		DDA3937_RS14090	0.61	+3.3
3,222,246	+		DDA3937_RS14090	0.61	+0.8
3,222,246	+		DDA3937_RS14090	0.61	-1.0
3,222,247	-		DDA3937_RS14090	0.61	+1.2
3,222,247	-		DDA3937_RS14090	0.61	-0.6
3,222,247	-		DDA3937_RS14090	0.61	-0.8
3,222,285	+		DDA3937_RS14090	0.62	+1.5
3,222,285	+		DDA3937_RS14090	0.62	-0.4
3,222,295	+		DDA3937_RS14090	0.62	+1.2
3,222,296	-		DDA3937_RS14090	0.62	-0.3
3,222,325	+		DDA3937_RS14090	0.63	+0.4
3,222,325	+		DDA3937_RS14090	0.63	-0.9
3,222,325	+		DDA3937_RS14090	0.63	-0.8
3,222,326	-		DDA3937_RS14090	0.63	-0.0
3,222,326	-		DDA3937_RS14090	0.63	-1.6
3,222,326	-		DDA3937_RS14090	0.63	+0.9
3,222,326	-		DDA3937_RS14090	0.63	-1.4
3,222,399	-		DDA3937_RS14090	0.64	+0.9
3,222,500	-		DDA3937_RS14090	0.67	-0.6
3,222,500	-		DDA3937_RS14090	0.67	-0.9
3,222,538	+		DDA3937_RS14090	0.68	-0.7
3,222,539	-		DDA3937_RS14090	0.68	+0.3
3,222,539	-		DDA3937_RS14090	0.68	-0.2
3,222,539	-		DDA3937_RS14090	0.68	-2.2
3,222,539	-		DDA3937_RS14090	0.68	+1.4
3,222,607	-		DDA3937_RS14090	0.69	-1.9
3,222,623	+		DDA3937_RS14090	0.70	-1.6
3,222,623	+		DDA3937_RS14090	0.70	-0.3
3,222,624	-		DDA3937_RS14090	0.70	-0.8
3,222,642	+		DDA3937_RS14090	0.70	+0.6
3,222,657	+		DDA3937_RS14090	0.71	-2.1
3,222,657	+		DDA3937_RS14090	0.71	+1.0
3,222,658	-		DDA3937_RS14090	0.71	+2.8
3,222,658	-		DDA3937_RS14090	0.71	-1.8
3,222,658	-		DDA3937_RS14090	0.71	-1.7
3,222,664	-		DDA3937_RS14090	0.71	-0.9
3,222,664	-		DDA3937_RS14090	0.71	+0.4
3,222,664	-		DDA3937_RS14090	0.71	+0.1
3,222,799	-		DDA3937_RS14090	0.74	+2.4
3,222,934	+		DDA3937_RS14090	0.77	-2.4
3,222,935	-		DDA3937_RS14090	0.77	-0.0
3,222,935	-		DDA3937_RS14090	0.77	-1.5
3,222,999	+		DDA3937_RS14090	0.79	-0.5
3,223,000	-		DDA3937_RS14090	0.79	+0.5
3,223,055	-		DDA3937_RS14090	0.80	+0.2
3,223,055	-		DDA3937_RS14090	0.80	+0.4
3,223,134	+		DDA3937_RS14090	0.82	-0.8
3,223,143	+		DDA3937_RS14090	0.82	+0.8
3,223,143	+		DDA3937_RS14090	0.82	-2.2
3,223,432	-		DDA3937_RS14090	0.89	+2.1
3,223,506	-				-0.1
3,223,698	+				+1.1
3,223,759	+				-1.8
3,223,759	+				-0.9
3,223,759	+				-1.2
3,223,759	+				-0.7
3,223,759	+				+0.7
3,223,759	+				+1.4
3,223,760	-				-0.9
3,223,760	-				-0.2
3,223,760	-				+0.1
3,223,760	-				-0.8
3,223,760	-				-1.4
3,223,760	-				-1.5
3,223,760	-				-2.2
3,223,798	+				-0.2
3,223,922	-				+1.9
3,223,922	-				-0.2
3,224,370	+		DDA3937_RS14095	0.60	+1.1
3,224,402	-		DDA3937_RS14095	0.64	-0.3
3,224,672	+				-0.3
3,224,691	-				-0.2
3,224,715	-				+0.0
3,224,715	-				-2.5
3,224,756	-				-1.2
3,224,756	-				+1.0
3,224,756	-				+0.4