Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13795

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,140,210	+				-0.8
3,140,224	-				+1.1
3,140,224	-				+0.3
3,140,327	+		DDA3937_RS13785	0.12	-0.3
3,140,328	-		DDA3937_RS13785	0.13	-1.4
3,140,334	-		DDA3937_RS13785	0.15	+0.9
3,140,529	-				-1.4
3,140,544	+				-1.7
3,140,596	-				-0.7
3,140,607	-				+0.7
3,140,617	-				+0.9
3,140,617	-				+0.5
3,140,663	-		DDA3937_RS13790	0.10	+0.5
3,140,684	+		DDA3937_RS13790	0.18	-1.6
3,140,684	+		DDA3937_RS13790	0.18	-1.4
3,140,685	-		DDA3937_RS13790	0.19	+0.8
3,140,697	+		DDA3937_RS13790	0.24	-0.7
3,140,697	+		DDA3937_RS13790	0.24	-2.2
3,140,806	-		DDA3937_RS13790	0.67	+0.5
3,140,806	-		DDA3937_RS13790	0.67	-1.7
3,140,869	+				+0.0
3,140,870	-				-1.0
3,140,870	-				-1.9
3,140,871	+				-1.5
3,140,872	-				-2.2
3,140,912	-				+0.2
3,140,929	+				-0.3
3,140,929	+				-1.7
3,140,929	+				+2.1
3,140,930	-				-1.0
3,140,959	+				-1.0
3,141,002	-				-0.7
3,141,002	-				+0.3
3,141,011	-				-0.2
3,141,011	-				-0.3
3,141,146	+				-1.5
3,141,146	+				-0.7
3,141,146	+				-1.7
3,141,146	+				+1.0
3,141,146	+				-1.3
3,141,147	-				-0.7
3,141,147	-				+0.1
3,141,147	-				+2.3
3,141,186	+				-0.3
3,141,186	+				+1.0
3,141,187	-				-0.3
3,141,187	-				-0.3
3,141,204	+				-1.7
3,141,205	-				-0.7
3,141,205	-				-2.0
3,141,218	-		DDA3937_RS13795	0.11	-0.7
3,141,294	+		DDA3937_RS13795	0.38	-1.7
3,141,295	-		DDA3937_RS13795	0.38	-2.3
3,141,337	+		DDA3937_RS13795	0.53	-0.6
3,141,338	-				+0.3
3,141,352	+		DDA3937_RS13795	0.58	-1.0
3,141,412	+		DDA3937_RS13795	0.79	-1.7
3,141,412	+		DDA3937_RS13795	0.79	-2.1
3,141,413	-		DDA3937_RS13795	0.79	-0.3
3,141,413	-		DDA3937_RS13795	0.79	+0.1
3,141,413	-		DDA3937_RS13795	0.79	-0.7
3,141,512	+				-0.1
3,141,512	+				-1.9
3,141,513	-				+0.3
3,141,569	-				-0.7
3,141,583	+				-1.5
3,141,583	+				-1.4
3,141,583	+				-1.0
3,141,583	+				+0.8
3,141,583	+				-0.6
3,141,583	+				-0.3
3,141,583	+				-0.5
3,141,584	-				-1.5
3,141,584	-				-2.0
3,141,584	-				-1.7
3,141,592	+				+2.3
3,141,622	+				-0.2
3,141,717	+		DDA3937_RS13800	0.40	-0.5
3,141,718	-		DDA3937_RS13800	0.40	-1.3
3,141,718	-		DDA3937_RS13800	0.40	-1.0
3,141,754	+		DDA3937_RS13800	0.53	-1.0
3,141,754	+		DDA3937_RS13800	0.53	-0.7
3,141,755	-		DDA3937_RS13800	0.53	-2.5
3,141,782	-		DDA3937_RS13800	0.63	-2.2
3,141,792	+		DDA3937_RS13800	0.67	-0.7
3,141,792	+		DDA3937_RS13800	0.67	-0.4
3,141,793	-		DDA3937_RS13800	0.67	-0.7
3,141,798	+		DDA3937_RS13800	0.69	-1.0
3,141,798	+		DDA3937_RS13800	0.69	-0.7
3,141,799	-		DDA3937_RS13800	0.69	-0.0
3,141,799	-		DDA3937_RS13800	0.69	-1.7
3,141,799	-		DDA3937_RS13800	0.69	+0.4
3,141,799	-		DDA3937_RS13800	0.69	-2.0
3,141,799	-		DDA3937_RS13800	0.69	-2.8
3,141,799	-		DDA3937_RS13800	0.69	-2.2
3,141,799	-		DDA3937_RS13800	0.69	-0.3
3,141,908	-				-2.5
3,141,912	-				+0.3
3,141,998	-				+1.7
3,142,029	+		DDA3937_RS13805	0.12	-2.0
3,142,029	+		DDA3937_RS13805	0.12	+0.9
3,142,029	+				-0.0
3,142,030	-		DDA3937_RS13805	0.12	+0.3
3,142,030	-		DDA3937_RS13805	0.12	+3.1
3,142,062	+		DDA3937_RS13805	0.25	+1.0
3,142,084	+		DDA3937_RS13805	0.33	+3.1
3,142,085	-		DDA3937_RS13805	0.34	+0.6
3,142,091	+		DDA3937_RS13805	0.36	-1.1
3,142,109	+		DDA3937_RS13805	0.43	-0.5
3,142,110	-		DDA3937_RS13805	0.43	-2.0
3,142,173	+		DDA3937_RS13805	0.68	-1.0
3,142,184	+		DDA3937_RS13805	0.72	-2.3
3,142,190	+		DDA3937_RS13805	0.74	+2.0
3,142,190	+		DDA3937_RS13805	0.74	-0.9
3,142,190	+		DDA3937_RS13805	0.74	-1.5
3,142,190	+		DDA3937_RS13805	0.74	+2.6
3,142,190	+		DDA3937_RS13805	0.74	+3.2
3,142,191	-		DDA3937_RS13805	0.75	+0.0
3,142,191	-		DDA3937_RS13805	0.75	+2.7
3,142,191	-		DDA3937_RS13805	0.75	-1.6
3,142,191	-		DDA3937_RS13805	0.75	-3.0
3,142,191	-		DDA3937_RS13805	0.75	+0.3
3,142,192	+		DDA3937_RS13805	0.75	-2.3
3,142,192	+		DDA3937_RS13805	0.75	+1.8
3,142,192	+		DDA3937_RS13805	0.75	+4.0
3,142,193	-		DDA3937_RS13805	0.76	-2.5
3,142,193	-		DDA3937_RS13805	0.76	+0.3
3,142,194	+		DDA3937_RS13805	0.76	+0.9
3,142,194	+		DDA3937_RS13805	0.76	-0.8
3,142,194	+				+0.3
3,142,194	+		DDA3937_RS13805	0.76	-1.3
3,142,195	-		DDA3937_RS13805	0.76	-0.2
3,142,195	-		DDA3937_RS13805	0.76	-1.8
3,142,195	-		DDA3937_RS13805	0.76	-0.3
3,142,230	+				+2.0
3,142,230	+				+0.9
3,142,260	-				-1.0
3,142,300	+				-0.9
3,142,300	+				-0.5
3,142,300	+				-0.3
3,142,301	-				+0.3
3,142,301	-				-1.7
3,142,303	-				-0.7
3,142,303	-				-1.7
3,142,329	+				-2.1
3,142,329	+				-0.5
3,142,330	-				-1.1
3,142,330	-				-1.3
3,142,346	+				-1.0
3,142,347	-				-1.7
3,142,349	+				-0.7
3,142,350	-				-1.1
3,142,381	+				-1.5
3,142,381	+				-2.2
3,142,381	+				-1.0
3,142,381	+				-0.8
3,142,381	+				-0.1
3,142,382	-				-1.7
3,142,382	-				+0.3
3,142,382	-				+1.3
3,142,382	-				-2.0
3,142,382	-				-0.4
3,142,441	+				-0.0
3,142,441	+				-1.3
3,142,441	+				+1.7
3,142,441	+				-0.0
3,142,441	+				-1.0
3,142,441	+				-0.8
3,142,441	+				-1.6
3,142,442	-				-0.6
3,142,442	-				-0.9
3,142,442	-				+0.4
3,142,442	-				-0.3
3,142,442	-				-0.7