Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13410

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,059,529	+		DDA3937_RS13400	0.44	+4.7
3,059,530	-		DDA3937_RS13400	0.44	+3.1
3,059,530	-		DDA3937_RS13400	0.44	+3.4
3,059,565	+		DDA3937_RS13400	0.47	+2.5
3,059,566	-		DDA3937_RS13400	0.47	+3.0
3,059,566	-		DDA3937_RS13400	0.47	+4.1
3,059,584	+		DDA3937_RS13400	0.49	+2.5
3,059,584	+		DDA3937_RS13400	0.49	+4.2
3,059,585	-		DDA3937_RS13400	0.49	-0.3
3,059,585	-		DDA3937_RS13400	0.49	+3.8
3,059,608	+		DDA3937_RS13400	0.51	+0.9
3,059,615	+		DDA3937_RS13400	0.52	+5.0
3,059,616	-		DDA3937_RS13400	0.52	+2.7
3,059,616	-		DDA3937_RS13400	0.52	+4.6
3,059,616	-		DDA3937_RS13400	0.52	+3.3
3,059,616	-		DDA3937_RS13400	0.52	+2.9
3,059,616	-		DDA3937_RS13400	0.52	+4.8
3,059,616	-		DDA3937_RS13400	0.52	-0.5
3,059,626	+		DDA3937_RS13400	0.53	+4.3
3,059,626	+		DDA3937_RS13400	0.53	+1.6
3,059,626	+		DDA3937_RS13400	0.53	+3.5
3,059,627	-		DDA3937_RS13400	0.53	+3.1
3,059,648	+		DDA3937_RS13400	0.55	+4.3
3,059,667	+		DDA3937_RS13400	0.57	+3.3
3,059,667	+		DDA3937_RS13400	0.57	+4.8
3,059,667	+		DDA3937_RS13400	0.57	+5.1
3,059,667	+		DDA3937_RS13400	0.57	+4.3
3,059,667	+		DDA3937_RS13400	0.57	+4.4
3,059,668	-		DDA3937_RS13400	0.57	+6.1
3,059,668	-		DDA3937_RS13400	0.57	+4.0
3,059,668	-		DDA3937_RS13400	0.57	-0.2
3,059,668	-		DDA3937_RS13400	0.57	+2.1
3,059,668	-		DDA3937_RS13400	0.57	+2.4
3,059,739	+		DDA3937_RS13400	0.64	+4.2
3,059,740	-		DDA3937_RS13400	0.64	+2.6
3,059,745	+		DDA3937_RS13400	0.65	+3.7
3,059,746	-		DDA3937_RS13400	0.65	+2.8
3,059,746	-		DDA3937_RS13400	0.65	+1.9
3,059,852	+		DDA3937_RS13400	0.75	+3.7
3,059,852	+		DDA3937_RS13400	0.75	+3.3
3,059,853	-		DDA3937_RS13400	0.75	+4.5
3,059,892	+		DDA3937_RS13400	0.79	+3.4
3,059,893	-		DDA3937_RS13400	0.79	+5.5
3,059,893	-		DDA3937_RS13400	0.79	+4.3
3,059,893	-		DDA3937_RS13400	0.79	+3.1
3,059,893	-		DDA3937_RS13400	0.79	+5.4
3,059,894	+		DDA3937_RS13400	0.79	+5.9
3,059,894	+		DDA3937_RS13400	0.79	+1.8
3,059,894	+		DDA3937_RS13400	0.79	+3.8
3,059,894	+		DDA3937_RS13400	0.79	+5.2
3,059,895	-		DDA3937_RS13400	0.80	+3.7
3,059,895	-		DDA3937_RS13400	0.80	+2.3
3,059,937	+		DDA3937_RS13400	0.84	+4.4
3,059,938	-		DDA3937_RS13400	0.84	+3.5
3,059,938	-		DDA3937_RS13400	0.84	+2.6
3,059,938	-		DDA3937_RS13400	0.84	+4.3
3,059,953	-		DDA3937_RS13400	0.85	+3.0
3,059,994	-		DDA3937_RS13400	0.89	+3.8
3,060,007	+				+3.4
3,060,007	+				+4.7
3,060,008	-				+1.4
3,060,012	+				+2.3
3,060,012	+				+5.4
3,060,013	-				+3.3
3,060,017	+				+3.3
3,060,017	+				+4.0
3,060,017	+				+4.4
3,060,017	+				+2.8
3,060,018	-				+3.0
3,060,018	-				+3.2
3,060,018	-				+3.6
3,060,018	-				+3.6
3,060,018	-				+1.4
3,060,018	-				+5.2
3,060,018	-				+3.0
3,060,028	+				+3.6
3,060,028	+				+2.3
3,060,029	-				+4.8
3,060,029	-				+4.2
3,060,160	+		DDA3937_RS13405	0.16	+4.5
3,060,160	+		DDA3937_RS13405	0.16	+4.8
3,060,160	+		DDA3937_RS13405	0.16	+5.7
3,060,160	+		DDA3937_RS13405	0.16	+4.8
3,060,161	-		DDA3937_RS13405	0.16	+3.6
3,060,208	+		DDA3937_RS13405	0.27	+2.2
3,060,209	-		DDA3937_RS13405	0.27	+3.9
3,060,257	-		DDA3937_RS13405	0.39	+3.4
3,060,288	+		DDA3937_RS13405	0.46	+5.6
3,060,288	+		DDA3937_RS13405	0.46	+3.6
3,060,289	-		DDA3937_RS13405	0.47	+4.6
3,060,289	-				+1.8
3,060,289	-		DDA3937_RS13405	0.47	+5.1
3,060,295	-		DDA3937_RS13405	0.48	+1.4
3,060,400	+		DDA3937_RS13405	0.73	+4.5
3,060,407	+		DDA3937_RS13405	0.75	+4.0
3,060,449	+		DDA3937_RS13405	0.85	+3.9
3,060,449	+		DDA3937_RS13405	0.85	+7.9
3,060,449	+		DDA3937_RS13405	0.85	+2.5
3,060,449	+		DDA3937_RS13405	0.85	+4.3
3,060,449	+		DDA3937_RS13405	0.85	-0.3
3,060,450	-		DDA3937_RS13405	0.85	+3.1
3,060,450	-		DDA3937_RS13405	0.85	+1.8
3,060,450	-		DDA3937_RS13405	0.85	+2.9
3,060,450	-		DDA3937_RS13405	0.85	+1.7
3,060,456	+		DDA3937_RS13405	0.87	+4.0
3,060,456	+		DDA3937_RS13405	0.87	+3.2
3,060,456	+		DDA3937_RS13405	0.87	+4.2
3,060,457	-		DDA3937_RS13405	0.87	+3.5
3,060,457	-		DDA3937_RS13405	0.87	+3.9
3,060,457	-		DDA3937_RS13405	0.87	+3.3
3,060,457	-		DDA3937_RS13405	0.87	+3.7
3,060,460	+		DDA3937_RS13405	0.88	+3.6
3,060,461	-		DDA3937_RS13405	0.88	+3.8
3,060,461	-		DDA3937_RS13405	0.88	+5.0
3,060,461	-		DDA3937_RS13405	0.88	+4.5
3,060,461	-		DDA3937_RS13405	0.88	+4.1
3,060,461	-		DDA3937_RS13405	0.88	+2.8
3,060,461	-		DDA3937_RS13405	0.88	+5.1
3,060,461	-		DDA3937_RS13405	0.88	+4.7
3,060,470	-				+2.0
3,060,473	-				+3.1
3,060,473	-				+3.4
3,060,475	+				+3.4
3,060,490	+				-1.3
3,060,490	+				+0.4
3,060,491	-				+3.4
3,060,491	-				+1.7
3,060,501	+				+2.8
3,060,576	+		DDA3937_RS13410	0.16	+2.2
3,060,593	+		DDA3937_RS13410	0.20	+1.8
3,060,593	+		DDA3937_RS13410	0.20	+3.7
3,060,659	+		DDA3937_RS13410	0.35	+0.9
3,060,686	+		DDA3937_RS13410	0.42	+1.2
3,060,696	+		DDA3937_RS13410	0.44	+4.3
3,060,697	-		DDA3937_RS13410	0.45	+3.4
3,060,697	-		DDA3937_RS13410	0.45	+1.8
3,060,744	+		DDA3937_RS13410	0.56	+1.6
3,060,744	+		DDA3937_RS13410	0.56	+3.2
3,060,745	-		DDA3937_RS13410	0.56	+5.6
3,060,749	+				-0.8
3,060,749	+		DDA3937_RS13410	0.57	+2.2
3,060,750	-		DDA3937_RS13410	0.57	+2.1
3,060,750	-		DDA3937_RS13410	0.57	+3.7
3,060,750	-		DDA3937_RS13410	0.57	+2.8
3,060,769	-		DDA3937_RS13410	0.62	+3.4
3,060,779	+		DDA3937_RS13410	0.64	+5.7
3,060,779	+		DDA3937_RS13410	0.64	+1.3
3,060,779	+		DDA3937_RS13410	0.64	+5.6
3,060,779	+		DDA3937_RS13410	0.64	+7.7
3,060,780	-		DDA3937_RS13410	0.65	+3.8
3,060,780	-		DDA3937_RS13410	0.65	+4.1
3,060,780	-		DDA3937_RS13410	0.65	+3.5
3,060,780	-		DDA3937_RS13410	0.65	-0.3
3,060,780	-		DDA3937_RS13410	0.65	+3.9
3,060,780	-		DDA3937_RS13410	0.65	+3.2
3,060,780	-		DDA3937_RS13410	0.65	+1.0
3,060,929	+				+6.2
3,060,930	-				+1.0
3,060,930	-				+2.9
3,060,930	-				+1.8
3,060,930	-				+2.7
3,060,973	+				+3.9
3,060,973	+				+1.7
3,060,973	+				+3.6
3,060,973	+				+3.8
3,060,973	+				+1.6
3,060,973	+				+3.7
3,060,974	-				+3.0
3,060,974	-				+3.6
3,060,974	-				+1.9
3,060,974	-				+2.3
3,060,992	+				+4.1
3,060,992	+				+2.8
3,060,993	-				+2.9
3,060,993	-				+1.8
3,060,993	-				+1.9
3,060,993	-				+0.8
3,060,993	-				+6.3
3,061,115	-		DDA3937_RS13415	0.21	+4.2
3,061,132	+		DDA3937_RS13415	0.23	+3.7
3,061,132	+		DDA3937_RS13415	0.23	+2.9
3,061,132	+		DDA3937_RS13415	0.23	+3.3
3,061,133	-		DDA3937_RS13415	0.23	+3.1
3,061,154	+		DDA3937_RS13415	0.26	+3.4
3,061,238	+		DDA3937_RS13415	0.37	+3.3
3,061,238	+		DDA3937_RS13415	0.37	+6.7
3,061,239	-		DDA3937_RS13415	0.37	+2.8
3,061,287	+		DDA3937_RS13415	0.44	+4.1
3,061,287	+		DDA3937_RS13415	0.44	+3.6
3,061,288	-		DDA3937_RS13415	0.44	+3.4
3,061,288	-		DDA3937_RS13415	0.44	+2.1
3,061,288	-		DDA3937_RS13415	0.44	+2.3
3,061,373	+		DDA3937_RS13415	0.56	+3.4
3,061,373	+		DDA3937_RS13415	0.56	+2.7
3,061,374	-		DDA3937_RS13415	0.56	-0.6
3,061,374	-		DDA3937_RS13415	0.56	+0.9
3,061,402	+		DDA3937_RS13415	0.59	+3.1
3,061,402	+		DDA3937_RS13415	0.59	+3.5
3,061,468	+		DDA3937_RS13415	0.68	+2.8
3,061,482	+		DDA3937_RS13415	0.70	+4.3
3,061,482	+		DDA3937_RS13415	0.70	+3.3
3,061,482	+		DDA3937_RS13415	0.70	+3.8
3,061,482	+		DDA3937_RS13415	0.70	+2.5
3,061,483	-		DDA3937_RS13415	0.70	+2.3
3,061,483	-		DDA3937_RS13415	0.70	+2.3
3,061,483	-		DDA3937_RS13415	0.70	+2.0
3,061,483	-		DDA3937_RS13415	0.70	+2.6
3,061,483	-		DDA3937_RS13415	0.70	+3.6
3,061,483	-		DDA3937_RS13415	0.70	+0.9
3,061,488	-		DDA3937_RS13415	0.71	+2.6
3,061,586	+		DDA3937_RS13415	0.84	+3.9
3,061,587	-		DDA3937_RS13415	0.85	+4.2
3,061,692	+				+0.3
3,061,692	+				-0.7
3,061,692	+				+0.8
3,061,692	+				+0.9
3,061,693	-				-1.9
3,061,693	-				+1.7
3,061,694	+				+2.1
3,061,694	+				+4.4
3,061,694	+				+3.3
3,061,694	+				+3.0
3,061,695	-				+3.0
3,061,698	+				-0.9
3,061,698	+				-0.8
3,061,743	+				-2.1
3,061,744	-				+4.7
3,061,769	+				+3.8
3,061,770	-				+2.0
3,061,770	-				+3.6
3,061,775	-		DDA3937_RS13420	0.11	-0.9
3,061,775	-		DDA3937_RS13420	0.11	+2.8
3,061,790	+		DDA3937_RS13420	0.17	+1.6
3,061,791	-		DDA3937_RS13420	0.17	+3.9
3,061,846	-		DDA3937_RS13420	0.38	+3.3